BibTeX records: Julie M. Sullivan

download as .bib file

@article{DBLP:journals/biodb/LyneBBCHHKLRSSW22,
  author       = {Rachel Lyne and
                  Adri{\'{a}}n Bazaga and
                  Daniela Butano and
                  Sergio Contrino and
                  Joshua Heimbach and
                  Fengyuan Hu and
                  Alex Kalderimis and
                  Mike Lyne and
                  Kevin Herald Reierskog and
                  Radek Stepan and
                  Julie M. Sullivan and
                  Archie Wise and
                  Yo Yehudi and
                  Gos Micklem},
  title        = {HumanMine: advanced data searching, analysis and cross-species comparison},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2022},
  number       = {2022},
  year         = {2022},
  url          = {https://doi.org/10.1093/database/baac054},
  doi          = {10.1093/DATABASE/BAAC054},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/LyneBBCHHKLRSSW22.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/KyritsisWSLM19,
  author       = {Konstantinos A Kyritsis and
                  Bing Wang and
                  Julie M. Sullivan and
                  Rachel Lyne and
                  Gos Micklem},
  title        = {InterMineR: an {R} package for InterMine databases},
  journal      = {Bioinform.},
  volume       = {35},
  number       = {17},
  pages        = {3206--3207},
  year         = {2019},
  url          = {https://doi.org/10.1093/bioinformatics/btz039},
  doi          = {10.1093/BIOINFORMATICS/BTZ039},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/KyritsisWSLM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/ButanoCCHLRSYM19,
  author       = {Daniela Butano and
                  Justin Clark{-}Casey and
                  Sergio Contrino and
                  Joshua Heimbach and
                  Rachel Lyne and
                  Kevin Herald Reierskog and
                  Julie M. Sullivan and
                  Yo Yehudi and
                  Gos Micklem},
  editor       = {Ronald Cornet and
                  Andra Waagmeester},
  title        = {Implementing {FAIR} Principles in InterMine},
  booktitle    = {12th International Conference on Semantic Web Applications and Tools
                  for Health Care and Life Sciences},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {2849},
  pages        = {137--138},
  publisher    = {CEUR-WS.org},
  year         = {2019},
  url          = {https://ceur-ws.org/Vol-2849/paper-19.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/ButanoCCHLRSYM19.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DumousseauKSARd18,
  author       = {M. Sivade Dumousseau and
                  Maximilian Koch and
                  Anjali Shrivastava and
                  Diego Alonso{-}L{\'{o}}pez and
                  Javier De Las Rivas and
                  Noemi del{-}Toro and
                  Colin W. Combe and
                  Birgit H. M. Meldal and
                  Joshua Heimbach and
                  Juri Rappsilber and
                  Julie M. Sullivan and
                  Yo Yehudi and
                  Sandra E. Orchard},
  title        = {{JAMI:} a Java library for molecular interactions and data interoperability},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {133:1--133:9},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2119-0},
  doi          = {10.1186/S12859-018-2119-0},
  timestamp    = {Mon, 19 Apr 2021 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DumousseauKSARd18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/DumousseauAABCC18,
  author       = {M. Sivade Dumousseau and
                  Diego Alonso{-}L{\'{o}}pez and
                  Mais G. Ammari and
                  Glyn Bradley and
                  Nancy H. Campbell and
                  Arnaud C{\'{e}}ol and
                  Gianni Cesareni and
                  Colin W. Combe and
                  Javier De Las Rivas and
                  Noemi del{-}Toro and
                  Joshua Heimbach and
                  Henning Hermjakob and
                  Igor Jurisica and
                  Maximilian Koch and
                  Luana Licata and
                  Ruth C. Lovering and
                  David J. Lynn and
                  Birgit H. M. Meldal and
                  Gos Micklem and
                  Simona Panni and
                  Pablo Porras and
                  Sylvie Ricard{-}Blum and
                  Bernd Roechert and
                  Lukasz Salw{\'{\i}}nski and
                  Anjali Shrivastava and
                  Julie M. Sullivan and
                  Nicolas Thierry{-}Mieg and
                  Yo Yehudi and
                  Kim Van Roey and
                  Sandra E. Orchard},
  title        = {Encompassing new use cases - level 3.0 of the {HUPO-PSI} format for
                  molecular interactions},
  journal      = {{BMC} Bioinform.},
  volume       = {19},
  number       = {1},
  pages        = {134:1--134:8},
  year         = {2018},
  url          = {https://doi.org/10.1186/s12859-018-2118-1},
  doi          = {10.1186/S12859-018-2118-1},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bmcbi/DumousseauAABCC18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/KomkovaLSYM18,
  author       = {Daria Komkova and
                  Rachel Lyne and
                  Julie M. Sullivan and
                  Yo Yehudi and
                  Gos Micklem},
  title        = {The InterMine Android app: Cross-organism genomic data in your pocket},
  journal      = {F1000Research},
  volume       = {7},
  pages        = {1837},
  year         = {2018},
  url          = {https://doi.org/10.12688/f1000research.17005.1},
  doi          = {10.12688/F1000RESEARCH.17005.1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/KomkovaLSYM18.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semco/RheeSSMKG16,
  author       = {David Rhee and
                  Kevin R. Shieh and
                  Julie M. Sullivan and
                  Gos Micklem and
                  Kami Kim and
                  Aaron Golden},
  title        = {Understanding the Systems Biology of Pathogen Virulence Using Semantic
                  Methodologies},
  booktitle    = {Tenth {IEEE} International Conference on Semantic Computing, {ICSC}
                  2016, Laguna Hills, CA, USA, February 4-6, 2016},
  pages        = {314--320},
  publisher    = {{IEEE} Computer Society},
  year         = {2016},
  url          = {https://doi.org/10.1109/ICSC.2016.33},
  doi          = {10.1109/ICSC.2016.33},
  timestamp    = {Thu, 23 Mar 2023 00:00:00 +0100},
  biburl       = {https://dblp.org/rec/conf/semco/RheeSSMKG16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semweb/DeraspeKBSMCCD16,
  author       = {Maxime D{\'{e}}raspe and
                  Kalpana Karra and
                  Gail Binkley and
                  Julie M. Sullivan and
                  Gos Micklem and
                  Jacques Corbeil and
                  J. Michael Cherry and
                  Michel Dumontier},
  editor       = {Cui Tao and
                  Guoqian Jiang and
                  Dezhao Song and
                  Jeff Heflin and
                  Frank Schilder},
  title        = {Semantic Research Platform for Model Organisms},
  booktitle    = {Proceedings of the First International Workshop on Biomedical Data
                  Integration and Discovery {(BMDID} 2016) co-located with The 15th
                  International Semantic Web Conference {(ISWC} 2016), Kobe, Japan,
                  October 17, 2016},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1709},
  publisher    = {CEUR-WS.org},
  year         = {2016},
  url          = {https://ceur-ws.org/Vol-1709/BMDID\_2016\_paper\_1.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:07 +0100},
  biburl       = {https://dblp.org/rec/conf/semweb/DeraspeKBSMCCD16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/DeraspeBBCCCCCH16,
  author       = {Maxime D{\'{e}}raspe and
                  Gail Binkley and
                  Daniela Butano and
                  Matthew Chadwick and
                  J. Michael Cherry and
                  Justin Clark{-}Casey and
                  Sergio Contrino and
                  Jacques Corbeil and
                  Joshua Heimbach and
                  Kalpana Karra and
                  Rachel Lyne and
                  Julie M. Sullivan and
                  Yo Yehudi and
                  Gos Micklem and
                  Michel Dumontier},
  editor       = {Adrian Paschke and
                  Albert Burger and
                  Andrea Splendiani and
                  M. Scott Marshall and
                  Paolo Romano},
  title        = {Making Linked Data {SPARQL} with the InterMine Biological Data Warehouse},
  booktitle    = {Proceedings of the 9th International Conference Semantic Web Applications
                  and Tools for Life Sciences, Amsterdam, The Netherlands, December
                  5-8, 2016},
  series       = {{CEUR} Workshop Proceedings},
  volume       = {1795},
  publisher    = {CEUR-WS.org},
  year         = {2016},
  url          = {https://ceur-ws.org/Vol-1795/paper8.pdf},
  timestamp    = {Fri, 10 Mar 2023 16:23:02 +0100},
  biburl       = {https://dblp.org/rec/conf/swat4ls/DeraspeBBCCCCCH16.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RheeCSSMKG15,
  author       = {David B. Rhee and
                  Matthew McKnight Croken and
                  Kevin R. Shieh and
                  Julie M. Sullivan and
                  Gos Micklem and
                  Kami Kim and
                  Aaron Golden},
  title        = {toxoMine: an integrated omics data warehouse for \emph{Toxoplasma
                  gondii} systems biology research},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2015},
  year         = {2015},
  url          = {https://doi.org/10.1093/database/bav066},
  doi          = {10.1093/DATABASE/BAV066},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/RheeCSSMKG15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KrishnakumarHCFKKRCMMSSKMMVT15,
  author       = {Vivek Krishnakumar and
                  Matthew R. Hanlon and
                  Sergio Contrino and
                  Erik S. Ferlanti and
                  Svetlana Karamycheva and
                  Maria Kim and
                  Benjamin D. Rosen and
                  Chia{-}Yi Cheng and
                  Walter Moreira and
                  Stephen A. Mock and
                  Joseph Stubbs and
                  Julie M. Sullivan and
                  Konstantinos Krampis and
                  Jason R. Miller and
                  Gos Micklem and
                  Matthew Vaughn and
                  Christopher D. Town},
  title        = {Araport: the Arabidopsis Information Portal},
  journal      = {Nucleic Acids Res.},
  volume       = {43},
  number       = {Database-Issue},
  pages        = {1003--1009},
  year         = {2015},
  url          = {https://doi.org/10.1093/nar/gku1200},
  doi          = {10.1093/NAR/GKU1200},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KrishnakumarHCFKKRCMMSSKMMVT15.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/KalderimisLBCLHHSSSM14,
  author       = {Alex Kalderimis and
                  Rachel Lyne and
                  Daniela Butano and
                  Sergio Contrino and
                  Mike Lyne and
                  Joshua Heimbach and
                  Fengyuan Hu and
                  Richard N. Smith and
                  Radek Stepan and
                  Julie M. Sullivan and
                  Gos Micklem},
  title        = {InterMine: extensive web services for modern biology},
  journal      = {Nucleic Acids Res.},
  volume       = {42},
  number       = {Webserver-Issue},
  pages        = {468--472},
  year         = {2014},
  url          = {https://doi.org/10.1093/nar/gku301},
  doi          = {10.1093/NAR/GKU301},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/KalderimisLBCLHHSSSM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/KalderimisSSLLM14,
  author       = {Alex Kalderimis and
                  Radek Stepan and
                  Julie M. Sullivan and
                  Rachel Lyne and
                  Michael Lyne and
                  Gos Micklem},
  title        = {\emph{BioJS InterMine List Analysis}: {A} BioJS component for displaying
                  graphical or statistical analysis of collections of items from InterMine
                  endpoints},
  journal      = {F1000Research},
  volume       = {3},
  pages        = {45},
  year         = {2014},
  url          = {https://doi.org/10.12688/f1000research.3-45.v1},
  doi          = {10.12688/F1000RESEARCH.3-45.V1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/KalderimisSSLLM14.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/KalderimisSSLLM14a,
  author       = {Alex Kalderimis and
                  Radek Stepan and
                  Julie M. Sullivan and
                  Rachel Lyne and
                  Michael Lyne and
                  Gos Micklem},
  title        = {\emph{BioJS InterMineTable Component}: {A} BioJS component for displaying
                  data from InterMine compatible webservice endpoints},
  journal      = {F1000Research},
  volume       = {3},
  pages        = {46},
  year         = {2014},
  url          = {https://doi.org/10.12688/f1000research.3-46.v1},
  doi          = {10.12688/F1000RESEARCH.3-46.V1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/KalderimisSSLLM14a.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/f1000research/KalderimisSSLLM14b,
  author       = {Alex Kalderimis and
                  Radek Stepan and
                  Julie M. Sullivan and
                  Rachel Lyne and
                  Michael Lyne and
                  Gos Micklem},
  title        = {\emph{BioJS DAGViewer}: {A} reusable JavaScript component for displaying
                  directed graphs},
  journal      = {F1000Research},
  volume       = {3},
  pages        = {51},
  year         = {2014},
  url          = {https://doi.org/10.12688/f1000research.3-51.v1},
  doi          = {10.12688/F1000RESEARCH.3-51.V1},
  timestamp    = {Mon, 28 Aug 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/f1000research/KalderimisSSLLM14b.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BalakrishnanPKHBHSMC12,
  author       = {Rama Balakrishnan and
                  Julie Park and
                  Kalpana Karra and
                  Benjamin C. Hitz and
                  Gail Binkley and
                  Eurie L. Hong and
                  Julie M. Sullivan and
                  Gos Micklem and
                  J. Michael Cherry},
  title        = {YeastMine - an integrated data warehouse for \emph{Saccharomyces cerevisiae}
                  data as a multipurpose tool-kit},
  journal      = {Database J. Biol. Databases Curation},
  volume       = {2012},
  year         = {2012},
  url          = {https://doi.org/10.1093/database/bar062},
  doi          = {10.1093/DATABASE/BAR062},
  timestamp    = {Thu, 13 Aug 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/biodb/BalakrishnanPKHBHSMC12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/SmithABCCHLLKRSSWWM12,
  author       = {Richard N. Smith and
                  Jelena Aleksic and
                  Daniela Butano and
                  Adrian Carr and
                  Sergio Contrino and
                  Fengyuan Hu and
                  Mike Lyne and
                  Rachel Lyne and
                  Alex Kalderimis and
                  Kim Rutherford and
                  Radek Stepan and
                  Julie M. Sullivan and
                  Matthew Wakeling and
                  Xavier Watkins and
                  Gos Micklem},
  title        = {InterMine: a flexible data warehouse system for the integration and
                  analysis of heterogeneous biological data},
  journal      = {Bioinform.},
  volume       = {28},
  number       = {23},
  pages        = {3163--3165},
  year         = {2012},
  url          = {https://doi.org/10.1093/bioinformatics/bts577},
  doi          = {10.1093/BIOINFORMATICS/BTS577},
  timestamp    = {Sun, 02 Oct 2022 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/bioinformatics/SmithABCCHLLKRSSWWM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ContrinoSBCHLRKSCKLSWPRZLSM12,
  author       = {Sergio Contrino and
                  Richard N. Smith and
                  Daniela Butano and
                  Adrian Carr and
                  Fengyuan Hu and
                  Rachel Lyne and
                  Kim Rutherford and
                  Alex Kalderimis and
                  Julie M. Sullivan and
                  Seth Carbon and
                  Ellen T. Kephart and
                  Paul Lloyd and
                  E. O. Stinson and
                  Nicole L. Washington and
                  Marc D. Perry and
                  Peter Ruzanov and
                  Zheng Zha and
                  Suzanna E. Lewis and
                  Lincoln D. Stein and
                  Gos Micklem},
  title        = {modMine: flexible access to modENCODE data},
  journal      = {Nucleic Acids Res.},
  volume       = {40},
  number       = {Database-Issue},
  pages        = {1082--1088},
  year         = {2012},
  url          = {https://doi.org/10.1093/nar/gkr921},
  doi          = {10.1093/NAR/GKR921},
  timestamp    = {Sat, 30 Sep 2023 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/ContrinoSBCHLRKSCKLSWPRZLSM12.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/McPikeSGD02,
  author       = {Mark P. McPike and
                  Julie M. Sullivan and
                  Jerry Goodisman and
                  James C. Dabrowiak},
  title        = {Footprinting, circular dichroism and {UV} melting studies on neomycin
                  {B} binding to the packaging region of human immunodeficiency virus
                  type-1 {RNA}},
  journal      = {Nucleic Acids Res.},
  volume       = {30},
  number       = {13},
  pages        = {2825--2831},
  year         = {2002},
  url          = {https://doi.org/10.1093/nar/gkf402},
  doi          = {10.1093/NAR/GKF402},
  timestamp    = {Sun, 17 May 2020 01:00:00 +0200},
  biburl       = {https://dblp.org/rec/journals/nar/McPikeSGD02.bib},
  bibsource    = {dblp computer science bibliography, https://dblp.org}
}
a service of  Schloss Dagstuhl - Leibniz Center for Informatics