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ORCIDBibTeX records: Chunhua Weng
@article{DBLP:journals/jamia/CasillanFGBLCMBCWHKKLPSW24,
author = {Aimiel Casillan and
Michelle E. Florido and
Jamie Galarza{-}Cornejo and
Suzanne Bakken and
John A Lynch and
Wendy K. Chung and
Kathleen F. Mittendorf and
Eta S. Berner and
John J. Connolly and
Chunhua Weng and
Ingrid A. Holm and
Atlas Khan and
Krzysztof Kiryluk and
Nita A Limdi and
Lynn Petukhova and
Maya Sabatello and
Julia Wynn},
title = {Participant-guided development of bilingual genomic educational infographics
for Electronic Medical Records and Genomics Phase {IV} study},
journal = {J. Am. Medical Informatics Assoc.},
volume = {31},
number = {2},
pages = {306--316},
year = {2024},
url = {https://doi.org/10.1093/jamia/ocad207},
doi = {10.1093/JAMIA/OCAD207},
timestamp = {Thu, 29 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/CasillanFGBLCMBCWHKKLPSW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/patterns/YangLDWWZW24,
author = {Jingye Yang and
Cong Liu and
Wendy Deng and
Da Wu and
Chunhua Weng and
Yunyun Zhou and
Kai Wang},
title = {Enhancing phenotype recognition in clinical notes using large language
models: PhenoBCBERT and PhenoGPT},
journal = {Patterns},
volume = {5},
number = {1},
pages = {100887},
year = {2024},
url = {https://doi.org/10.1016/j.patter.2023.100887},
doi = {10.1016/J.PATTER.2023.100887},
timestamp = {Sat, 10 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/patterns/YangLDWWZW24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2401-06791,
author = {Gongbo Zhang and
Yiliang Zhou and
Yan Hu and
Hua Xu and
Chunhua Weng and
Yifan Peng},
title = {A Span-based Model for Extracting Overlapping {PICO} Entities from
{RCT} Publications},
journal = {CoRR},
volume = {abs/2401.06791},
year = {2024},
url = {https://doi.org/10.48550/arXiv.2401.06791},
doi = {10.48550/ARXIV.2401.06791},
eprinttype = {arXiv},
eprint = {2401.06791},
timestamp = {Thu, 01 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2401-06791.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/IdnayFDMWS23,
author = {Betina Ross S. Idnay and
Yilu Fang and
Caitlin N. Dreisbach and
Karen Marder and
Chunhua Weng and
Rebecca Schnall},
title = {Clinical research staff perceptions on a natural language processing-driven
tool for eligibility prescreening: An iterative usability assessment},
journal = {Int. J. Medical Informatics},
volume = {171},
pages = {104985},
year = {2023},
url = {https://doi.org/10.1016/j.ijmedinf.2023.104985},
doi = {10.1016/J.IJMEDINF.2023.104985},
timestamp = {Sun, 16 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/IdnayFDMWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/TaZCFNW23,
author = {Casey N. Ta and
Jason E. Zucker and
Po{-}Hsiang Chiu and
Yilu Fang and
Karthik Natarajan and
Chunhua Weng},
title = {Clinical and temporal characterization of {COVID-19} subgroups using
patient vector embeddings of electronic health records},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {2},
pages = {256--272},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocac208},
doi = {10.1093/JAMIA/OCAC208},
timestamp = {Sat, 25 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/TaZCFNW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/BrandtKLPWHHLSWWCCLCKCDRWPWRSR23,
author = {Pascal S. Brandt and
Abel N. Kho and
Yuan Luo and
Jennifer A. Pacheco and
Theresa L. Walunas and
Hakon Hakonarson and
George Hripcsak and
Cong Liu and
Ning Shang and
Chunhua Weng and
Nephi Walton and
David S. Carrell and
Paul K. Crane and
Eric B. Larson and
Christopher G. Chute and
Iftikhar J. Kullo and
Robert J. Carroll and
Joshua C. Denny and
Andrea H. Ramirez and
Wei{-}Qi Wei and
Jyotishman Pathak and
Laura K. Wiley and
Rachel L. Richesson and
Justin B. Starren and
Luke V. Rasmussen},
title = {Characterizing variability of electronic health record-driven phenotype
definitions},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {3},
pages = {427--437},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocac235},
doi = {10.1093/JAMIA/OCAC235},
timestamp = {Tue, 28 Mar 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/BrandtKLPWHHLSWWCCLCKCDRWPWRSR23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KangSKTPSWZMPW23,
author = {Tian Kang and
Yingcheng Sun and
Jae Hyun Kim and
Casey N. Ta and
Adler J. Perotte and
Kayla Schiffer and
Mutong Wu and
Yang Zhao and
Nour Moustafa{-}Fahmy and
Yifan Peng and
Chunhua Weng},
title = {\emph{EvidenceMap}: a three-level knowledge representation for medical
evidence computation and comprehension},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {6},
pages = {1022--1031},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad036},
doi = {10.1093/JAMIA/OCAD036},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KangSKTPSWZMPW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/NewburyLIW23,
author = {Abigail Newbury and
Hao Liu and
Betina Ross S. Idnay and
Chunhua Weng},
title = {The suitability of {UMLS} and {SNOMED-CT} for encoding outcome concepts},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {12},
pages = {1895--1903},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad161},
doi = {10.1093/JAMIA/OCAD161},
timestamp = {Sun, 10 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/NewburyLIW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/FangLITMW23,
author = {Yilu Fang and
Hao Liu and
Betina Ross S. Idnay and
Casey N. Ta and
Karen Marder and
Chunhua Weng},
title = {A data-driven approach to optimizing clinical study eligibility criteria},
journal = {J. Biomed. Informatics},
volume = {142},
pages = {104375},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104375},
doi = {10.1016/J.JBI.2023.104375},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/FangLITMW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/TangSINSEXDDRWP23,
author = {Liyan Tang and
Zhaoyi Sun and
Betina Ross S. Idnay and
Jordan G. Nestor and
Ali Soroush and
Pierre A. Elias and
Ziyang Xu and
Ying Ding and
Greg Durrett and
Justin F. Rousseau and
Chunhua Weng and
Yifan Peng},
title = {Evaluating large language models on medical evidence summarization},
journal = {npj Digit. Medicine},
volume = {6},
year = {2023},
url = {https://doi.org/10.1038/s41746-023-00896-7},
doi = {10.1038/S41746-023-00896-7},
timestamp = {Sun, 31 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/TangSINSEXDDRWP23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/NatarajanWS23,
author = {Karthik Natarajan and
Chunhua Weng and
Soumitra Sengupta},
editor = {Maria H{\"{a}}gglund and
Madeleine Blusi and
Stefano Bonacina and
Lina Nilsson and
Inge Cort Madsen and
Sylvia Pelayo and
Anne Moen and
Arriel Benis and
Lars Lindsk{\"{o}}ld and
Parisis Gallos},
title = {A Model for Multi-Institutional Clinical Data Repository},
booktitle = {Caring is Sharing - Exploiting the Value in Data for Health and Innovation
- Proceedings of {MIE} 2023, Gothenburg, Sweden, 22 - 25 May 2023},
series = {Studies in Health Technology and Informatics},
volume = {302},
pages = {312--316},
publisher = {{IOS} Press},
year = {2023},
url = {https://doi.org/10.3233/SHTI230125},
doi = {10.3233/SHTI230125},
timestamp = {Fri, 07 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/mie/NatarajanWS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/0054PW23,
author = {Hao Liu and
Yifan Peng and
Chunhua Weng},
editor = {Maria H{\"{a}}gglund and
Madeleine Blusi and
Stefano Bonacina and
Lina Nilsson and
Inge Cort Madsen and
Sylvia Pelayo and
Anne Moen and
Arriel Benis and
Lars Lindsk{\"{o}}ld and
Parisis Gallos},
title = {How Good Is ChatGPT for Medication Evidence Synthesis?},
booktitle = {Caring is Sharing - Exploiting the Value in Data for Health and Innovation
- Proceedings of {MIE} 2023, Gothenburg, Sweden, 22 - 25 May 2023},
series = {Studies in Health Technology and Informatics},
volume = {302},
pages = {1062--1066},
publisher = {{IOS} Press},
year = {2023},
url = {https://doi.org/10.3233/SHTI230347},
doi = {10.3233/SHTI230347},
timestamp = {Wed, 05 Jul 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/mie/0054PW23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-06294,
author = {Jingye Yang and
Cong Liu and
Wendy Deng and
Da Wu and
Chunhua Weng and
Yunyun Zhou and
Kai Wang},
title = {Enhancing Phenotype Recognition in Clinical Notes Using Large Language
Models: PhenoBCBERT and PhenoGPT},
journal = {CoRR},
volume = {abs/2308.06294},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.06294},
doi = {10.48550/ARXIV.2308.06294},
eprinttype = {arXiv},
eprint = {2308.06294},
timestamp = {Tue, 16 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-06294.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-08660,
author = {Jenna Kefeli and
Ali Soroush and
Courtney J. Diamond and
Haley M. Zylberberg and
Benjamin L. May and
Julian A. Abrams and
Chunhua Weng and
Nicholas P. Tatonetti},
title = {Large Language Models for Granularized Barrett's Esophagus Diagnosis
Classification},
journal = {CoRR},
volume = {abs/2308.08660},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.08660},
doi = {10.48550/ARXIV.2308.08660},
eprinttype = {arXiv},
eprint = {2308.08660},
timestamp = {Fri, 25 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-08660.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2311-11211,
author = {Gongbo Zhang and
Qiao Jin and
Denis Jered McInerney and
Yong Chen and
Fei Wang and
Curtis L. Cole and
Qian Yang and
Yanshan Wang and
Bradley A. Malin and
Mor Peleg and
Byron C. Wallace and
Zhiyong Lu and
Chunhua Weng and
Yifan Peng},
title = {Leveraging Generative {AI} for Clinical Evidence Summarization Needs
to Achieve Trustworthiness},
journal = {CoRR},
volume = {abs/2311.11211},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2311.11211},
doi = {10.48550/ARXIV.2311.11211},
eprinttype = {arXiv},
eprint = {2311.11211},
timestamp = {Thu, 23 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2311-11211.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2312-15320,
author = {Da Wu and
Jingye Yang and
Steven Klein and
Cong Liu and
Tzung{-}Chien Hsieh and
Peter Krawitz and
Chunhua Weng and
Gholson J. Lyon and
Jennifer M. Kalish and
Kai Wang},
title = {Multimodal Machine Learning Combining Facial Images and Clinical Texts
Improves Diagnosis of Rare Genetic Diseases},
journal = {CoRR},
volume = {abs/2312.15320},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2312.15320},
doi = {10.48550/ARXIV.2312.15320},
eprinttype = {arXiv},
eprint = {2312.15320},
timestamp = {Wed, 10 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2312-15320.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/NelsonDHHBWKLGW22,
author = {Sarah J. Nelson and
Bethany Drury and
Daniel Hood and
Jeremy Harper and
Tiffany Bernard and
Chunhua Weng and
Nan Kennedy and
Bernard LaSalle and
Ramkiran Gouripeddi and
Consuelo H. Wilkins and
Paul A. Harris},
title = {EHR-based cohort assessment for multicenter RCTs: a fast and flexible
model for identifying potential study sites},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {4},
pages = {652--659},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocab265},
doi = {10.1093/JAMIA/OCAB265},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/NelsonDHHBWKLGW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/JuhnRWKMRWSSH22,
author = {Young J. Juhn and
Euijung Ryu and
Chung{-}Il Wi and
Katherine S. King and
Momin M. Malik and
Santiago Romero{-}Brufau and
Chunhua Weng and
Sunghwan Sohn and
Richard R. Sharp and
John D. Halamka},
title = {Assessing socioeconomic bias in machine learning algorithms in health
care: a case study of the {HOUSES} index},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {7},
pages = {1142--1151},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac052},
doi = {10.1093/JAMIA/OCAC052},
timestamp = {Mon, 25 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/JuhnRWKMRWSSH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/FangISLCMXSW22,
author = {Yilu Fang and
Betina Ross S. Idnay and
Yingcheng Sun and
Hao Liu and
Zhehuan Chen and
Karen Marder and
Hua Xu and
Rebecca Schnall and
Chunhua Weng},
title = {Combining human and machine intelligence for clinical trial eligibility
querying},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {7},
pages = {1161--1171},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac051},
doi = {10.1093/JAMIA/OCAC051},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/FangISLCMXSW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WileyFGRSWBCDGG22,
author = {Ken Wiley and
Laura Findley and
Madison Goldrich and
Tejinder K. Rakhra{-}Burris and
Ana Stevens and
Pamela Williams and
Carol J. Bult and
Rex L. Chisholm and
Patricia Deverka and
Geoffrey S. Ginsburg and
Eric D. Green and
Gail P. Jarvik and
George A. Mensah and
Erin Ramos and
Mary V. Relling and
Dan M. Roden and
Robb Rowley and
Gil Alterovitz and
Samuel J. Aronson and
Lisa Bastarache and
James J. Cimino and
Erin L. Crowgey and
Guilherme Del Fiol and
Robert R. Freimuth and
Mark A. Hoffman and
Janina M. Jeff and
Kevin B. Johnson and
Kensaku Kawamoto and
Subha Madhavan and
Eneida A. Mendon{\c{c}}a and
Lucila Ohno{-}Machado and
Siddharth Pratap and
Casey Overby Taylor and
Marylyn D. Ritchie and
Nephi Walton and
Chunhua Weng and
Teresa Zayas{-}Cab{\'{a}}n and
Teri A. Manolio and
Marc S. Williams},
title = {A research agenda to support the development and implementation of
genomics-based clinical informatics tools and resources},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {8},
pages = {1342--1349},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac057},
doi = {10.1093/JAMIA/OCAC057},
timestamp = {Mon, 08 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WileyFGRSWBCDGG22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ChoEEWRBDN22,
author = {Sylvia Cho and
Ipek Ensari and
No{\'{e}}mie Elhadad and
Chunhua Weng and
Jennifer M. Radin and
Brinnae Bent and
Pooja M. Desai and
Karthik Natarajan},
title = {An interactive fitness-for-use data completeness tool to assess activity
tracker data},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {12},
pages = {2032--2040},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac166},
doi = {10.1093/JAMIA/OCAC166},
timestamp = {Sun, 15 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/ChoEEWRBDN22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/RogersPTLSCHW22,
author = {James R. Rogers and
Jovana Pavisic and
Casey N. Ta and
Cong Liu and
Ali Soroush and
Ying Kuen Cheung and
George Hripcsak and
Chunhua Weng},
title = {Leveraging electronic health record data for clinical trial planning
by assessing eligibility criteria's impact on patient count and safety},
journal = {J. Biomed. Informatics},
volume = {127},
pages = {104032},
year = {2022},
url = {https://doi.org/10.1016/j.jbi.2022.104032},
doi = {10.1016/J.JBI.2022.104032},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/RogersPTLSCHW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LeeLKCSRCW22,
author = {Junghwan Lee and
Cong Liu and
Junyoung Kim and
Zhehuan Chen and
Yingcheng Sun and
James R. Rogers and
Wendy K. Chung and
Chunhua Weng},
title = {Deep learning for rare disease: {A} scoping review},
journal = {J. Biomed. Informatics},
volume = {135},
pages = {104227},
year = {2022},
url = {https://doi.org/10.1016/j.jbi.2022.104227},
doi = {10.1016/J.JBI.2022.104227},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LeeLKCSRCW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LiuCCHSW22,
author = {Hao Liu and
Simona Carini and
Zhehuan Chen and
Spencer Phillips Hey and
Ida Sim and
Chunhua Weng},
title = {Ontology-based categorization of clinical studies by their conditions},
journal = {J. Biomed. Informatics},
volume = {135},
pages = {104235},
year = {2022},
url = {https://doi.org/10.1016/j.jbi.2022.104235},
doi = {10.1016/J.JBI.2022.104235},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LiuCCHSW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/YuPGLWSBCCDFGHH22,
author = {Jingzhi Yu and
Jennifer A. Pacheco and
Anika S. Ghosh and
Yuan Luo and
Chunhua Weng and
Ning Shang and
Barbara Benoit and
David S. Carrell and
Robert J. Carroll and
Ozan Dikilitas and
Robert R. Freimuth and
Vivian S. Gainer and
Hakon Hakonarson and
George Hripcsak and
Iftikhar J. Kullo and
Frank D. Mentch and
Shawn N. Murphy and
Peggy L. Peissig and
Andrea H. Ramirez and
Nephi Walton and
Wei{-}Qi Wei and
Luke V. Rasmussen},
title = {Under-specification as the source of ambiguity and vagueness in narrative
phenotype algorithm definitions},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {22},
number = {1},
pages = {23},
year = {2022},
url = {https://doi.org/10.1186/s12911-022-01759-z},
doi = {10.1186/S12911-022-01759-Z},
timestamp = {Mon, 14 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/midm/YuPGLWSBCCDFGHH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/DengPGCMSZWBDWLCYTKRWL22,
author = {Yu Deng and
Jennifer A. Pacheco and
Anika S. Ghosh and
Anh H. Chung and
Chengsheng Mao and
Joshua C. Smith and
Juan Zhao and
Wei{-}Qi Wei and
April Barnado and
Chad Dorn and
Chunhua Weng and
Cong Liu and
Adam Cordon and
Jingzhi Yu and
Yacob Tedla and
Abel Kho and
Rosalind Ramsey{-}Goldman and
Theresa Walunas and
Yuan Luo},
title = {Natural language processing to identify lupus nephritis phenotype
in electronic health records},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {22-S},
number = {2},
pages = {348},
year = {2022},
url = {https://doi.org/10.1186/s12911-024-02420-7},
doi = {10.1186/S12911-024-02420-7},
timestamp = {Sat, 16 Mar 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/midm/DengPGCMSZWBDWLCYTKRWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/LiWGCLWX22,
author = {Jianfu Li and
Qiang Wei and
Omid Ghiasvand and
Miao Chen and
Victor S. Lobanov and
Chunhua Weng and
Hua Xu},
title = {A comparative study of pre-trained language models for named entity
recognition in clinical trial eligibility criteria from multiple corpora},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {22},
number = {3},
pages = {235},
year = {2022},
url = {https://doi.org/10.1186/s12911-022-01967-7},
doi = {10.1186/S12911-022-01967-7},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/LiWGCLWX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/IdnayFDMWS22,
author = {Betina Ross S. Idnay and
Yilu Fang and
Caitlin N. Dreisbach and
Karen Marder and
Chunhua Weng and
Rebecca Schnall},
title = {Optimizing Clinical Research Eligibility Prescreening: An Iterative
Usability Evaluation of an NLP-driven Cohort Identification Tool},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/1056-1.4641368/224-1.4641365},
timestamp = {Wed, 17 Apr 2024 11:46:45 +0200},
biburl = {https://dblp.org/rec/conf/amia/IdnayFDMWS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/IdnayFSLCSW22,
author = {Betina Ross S. Idnay and
Yilu Fang and
Yingcheng Sun and
Hao Liu and
Zhehuan Chen and
Rebecca Schnall and
Chunhua Weng},
title = {Criteria2Query 2.0: Combining Machine Efficiency and Human Intelligence
to Define a More Accurate and Feasible Cohort for Clinical Trial Recruitment},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f009-1.4640668/f009-1.4640669/344-1.4640694/219-1.4640691},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/IdnayFSLCSW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SchifferWC22,
author = {Kayla Schiffer and
Chunhua Weng and
Yoolim Choi},
title = {Leveraging Hierarchical Concept Relations to Improve Automatic Detection
of Off-Label Drug Use in Electronic Health Records Data},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f007-1.4641746/f007-1.4641747/190-1.4641853/921-1.4641850},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SchifferWC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SoroushDZAW22,
author = {Ali Soroush and
Courtney J. Diamond and
Haley Zylberberg and
Julian Abrams and
Chunhua Weng},
title = {A Clinical Data Summarization Pipeline for Patients at Risk for Esophageal
Adenocarcinoma Undergoing Endoscopic Surveillance},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f007-1.4641746/f007-1.4641747/446-1.4641829/404-1.4641826},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SoroushDZAW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/ChenFLW22,
author = {Zhehuan Chen and
Yilu Fang and
Hao Liu and
Chunhua Weng},
editor = {Brigitte S{\'{e}}roussi and
Patrick Weber and
Ferdinand Dhombres and
Cyril Grouin and
Jan{-}David Liebe and
Sylvia Pelayo and
Andrea Pinna and
Bastien Rance and
Lucia Sacchi and
Adrien Ugon and
Arriel Benis and
Parisis Gallos},
title = {Data-Driven Modeling of Randomized Controlled Trial Outcomes},
booktitle = {Challenges of Trustable {AI} and Added-Value on Health - Proceedings
of {MIE} 2022, Medical Informatics Europe, Nice, France, May 27-30,
2022},
series = {Studies in Health Technology and Informatics},
volume = {294},
pages = {392--396},
publisher = {{IOS} Press},
year = {2022},
url = {https://doi.org/10.3233/SHTI220481},
doi = {10.3233/SHTI220481},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mie/ChenFLW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aci/BeaucheminWSPAH21,
author = {Melissa Beauchemin and
Chunhua Weng and
Lillian Sung and
Adrienne Pichon and
Maura Abbott and
Dawn L. Hershman and
Rebecca Schnall},
title = {Data Quality of Chemotherapy-Induced Nausea and Vomiting Documentation},
journal = {Appl. Clin. Inform.},
volume = {12},
number = {02},
pages = {320--328},
year = {2021},
url = {https://doi.org/10.1055/s-0041-1728698},
doi = {10.1055/S-0041-1728698},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aci/BeaucheminWSPAH21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aci/SunBDKTRLW21,
author = {Yingcheng Sun and
Alex M. Butler and
Ibrahim Diallo and
Jae Hyun Kim and
Casey N. Ta and
James R. Rogers and
Hao Liu and
Chunhua Weng},
title = {A Framework for Systematic Assessment of Clinical Trial Population
Representativeness Using Electronic Health Records Data},
journal = {Appl. Clin. Inform.},
volume = {12},
number = {4},
pages = {816--825},
year = {2021},
url = {https://doi.org/10.1055/s-0041-1733846},
doi = {10.1055/S-0041-1733846},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/aci/SunBDKTRLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/KimBTSMW21,
author = {Jae Hyun Kim and
Alex M. Butler and
Casey N. Ta and
Yingcheng Sun and
Mathew S. Maurer and
Chunhua Weng},
title = {The potential role of {EHR} data in optimizing eligibility criteria
definition for cardiovascular outcome trials},
journal = {Int. J. Medical Informatics},
volume = {156},
pages = {104587},
year = {2021},
url = {https://doi.org/10.1016/j.ijmedinf.2021.104587},
doi = {10.1016/J.IJMEDINF.2021.104587},
timestamp = {Wed, 08 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/KimBTSMW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KimTLSBSERLORLL21,
author = {Jae Hyun Kim and
Casey N. Ta and
Cong Liu and
Cynthia Sung and
Alex M. Butler and
Latoya A. Stewart and
Lyudmila Ena and
James R. Rogers and
Junghwan Lee and
Anna Ostropolets and
Patrick B. Ryan and
Hao Liu and
Shing M. Lee and
Mitchell S. V. Elkind and
Chunhua Weng},
title = {Towards clinical data-driven eligibility criteria optimization for
interventional {COVID-19} clinical trials},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {1},
pages = {14--22},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa276},
doi = {10.1093/JAMIA/OCAA276},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/KimTLSBSERLORLL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RogersLZCHW21,
author = {James R. Rogers and
Junghwan Lee and
Ziheng Zhou and
Ying Kuen Cheung and
George Hripcsak and
Chunhua Weng},
title = {Contemporary use of real-world data for clinical trial conduct in
the United States: a scoping review},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {1},
pages = {144--154},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa224},
doi = {10.1093/JAMIA/OCAA224},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RogersLZCHW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SunBLLSKIGWLYW21,
author = {Yingcheng Sun and
Alex M. Butler and
Fengyang Lin and
Hao Liu and
Latoya A. Stewart and
Jae Hyun Kim and
Betina Ross S. Idnay and
Qingyin Ge and
Xinyi Wei and
Cong Liu and
Chi Yuan and
Chunhua Weng},
title = {The {COVID-19} Trial Finder},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {3},
pages = {616--621},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa304},
doi = {10.1093/JAMIA/OCAA304},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/SunBLLSKIGWLYW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KangPTTW21,
author = {Tian Kang and
Adler J. Perotte and
Youlan Tang and
Casey N. Ta and
Chunhua Weng},
title = {UMLS-based data augmentation for natural language processing of clinical
research literature},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {4},
pages = {812--823},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa309},
doi = {10.1093/JAMIA/OCAA309},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KangPTTW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KangTKPW21,
author = {Tian Kang and
Ali Turfah and
Jaehyun Kim and
Adler J. Perotte and
Chunhua Weng},
title = {A neuro-symbolic method for understanding free-text medical evidence},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {8},
pages = {1703--1711},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab077},
doi = {10.1093/JAMIA/OCAB077},
timestamp = {Tue, 16 Aug 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KangTKPW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/YuanRTKLW21,
author = {Chi Yuan and
Patrick B. Ryan and
Casey N. Ta and
Jae Hyun Kim and
Ziran Li and
Chunhua Weng},
title = {From clinical trials to clinical practice: How long are drugs tested
and then used by patients?},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {11},
pages = {2456--2460},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab164},
doi = {10.1093/JAMIA/OCAB164},
timestamp = {Wed, 15 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/YuanRTKLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/FranksLERWL21,
author = {Lauren Franks and
Hao Liu and
Mitchell S. V. Elkind and
Muredach P. Reilly and
Chunhua Weng and
Shing M. Lee},
title = {Misalignment between {COVID-19} hotspots and clinical trial sites},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {11},
pages = {2461--2466},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab167},
doi = {10.1093/JAMIA/OCAB167},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/FranksLERWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/IdnayDWS21,
author = {Betina Ross S. Idnay and
Caitlin N. Dreisbach and
Chunhua Weng and
Rebecca Schnall},
title = {A systematic review on natural language processing systems for eligibility
prescreening in clinical research},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {1},
pages = {197--206},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab228},
doi = {10.1093/JAMIA/OCAB228},
timestamp = {Fri, 21 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/IdnayDWS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/GuoYSZBKWW21,
author = {Jia Guo and
Chi Yuan and
Ning Shang and
Tian Zheng and
Natalie A. Bello and
Krzysztof Kiryluk and
Chunhua Weng and
Shuang Wang},
title = {Similarity-based health risk prediction using Domain Fusion and electronic
health records data},
journal = {J. Biomed. Informatics},
volume = {116},
pages = {103711},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103711},
doi = {10.1016/J.JBI.2021.103711},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/GuoYSZBKWW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LiuYBSW21,
author = {Hao Liu and
Chi Yuan and
Alex M. Butler and
Yingcheng Sun and
Chunhua Weng},
title = {A knowledge base of clinical trial eligibility criteria},
journal = {J. Biomed. Informatics},
volume = {117},
pages = {103771},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103771},
doi = {10.1016/J.JBI.2021.103771},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LiuYBSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SunBSLYSKW21,
author = {Yingcheng Sun and
Alex M. Butler and
Latoya A. Stewart and
Hao Liu and
Chi Yuan and
Christopher T. Southard and
Jae Hyun Kim and
Chunhua Weng},
title = {Building an {OMOP} common data model-compliant annotated corpus for
{COVID-19} clinical trials},
journal = {J. Biomed. Informatics},
volume = {118},
pages = {103790},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103790},
doi = {10.1016/J.JBI.2021.103790},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/SunBSLYSKW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/RogersHCW21,
author = {James R. Rogers and
George Hripcsak and
Ying Kuen Cheung and
Chunhua Weng},
title = {Clinical comparison between trial participants and potentially eligible
patients using electronic health record data: {A} generalizability
assessment method},
journal = {J. Biomed. Informatics},
volume = {119},
pages = {103822},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103822},
doi = {10.1016/J.JBI.2021.103822},
timestamp = {Tue, 13 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/RogersHCW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/AverittRWP21,
author = {Amelia J. Averitt and
Patrick B. Ryan and
Chunhua Weng and
Adler J. Perotte},
title = {A conceptual framework for external validity},
journal = {J. Biomed. Informatics},
volume = {121},
pages = {103870},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2021.103870},
doi = {10.1016/J.JBI.2021.103870},
timestamp = {Thu, 16 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/AverittRWP21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/ShangKPZMFDCDHA21,
author = {Ning Shang and
Atlas Khan and
Fernanda Polubriaginof and
Francesca Zanoni and
Karla Mehl and
David Fasel and
Paul E. Drawz and
Robert J. Carroll and
Joshua C. Denny and
Matthew A. Hathcock and
Adelaide M. Arruda{-}Olson and
Peggy L. Peissig and
Richard A. Dart and
Murray H. Brilliant and
Eric B. Larson and
David S. Carrell and
Sarah A. Pendergrass and
Shefali Setia Verma and
Marylyn D. Ritchie and
Barbara Benoit and
Vivian S. Gainer and
Elizabeth W. Karlson and
Adam S. Gordon and
Gail P. Jarvik and
Ian B. Stanaway and
David R. Crosslin and
Sumit Mohan and
Iuliana Ionita{-}Laza and
Nicholas P. Tatonetti and
Ali G. Gharavi and
George Hripcsak and
Chunhua Weng and
Krzysztof Kiryluk},
title = {Medical records-based chronic kidney disease phenotype for clinical
care and "big data" observational and genetic studies},
journal = {npj Digit. Medicine},
volume = {4},
year = {2021},
url = {https://doi.org/10.1038/s41746-021-00428-1},
doi = {10.1038/S41746-021-00428-1},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/ShangKPZMFDCDHA21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/XuWKSHGKMNWGKWI21,
author = {Danqing Xu and
Chen Wang and
Atlas Khan and
Ning Shang and
Zihuai He and
Adam S. Gordon and
Iftikhar J. Kullo and
Shawn N. Murphy and
Yizhao Ni and
Wei{-}Qi Wei and
Ali Gharavi and
Krzysztof Kiryluk and
Chunhua Weng and
Iuliana Ionita{-}Laza},
title = {Quantitative disease risk scores from {EHR} with applications to clinical
risk stratification and genetic studies},
journal = {npj Digit. Medicine},
volume = {4},
year = {2021},
url = {https://doi.org/10.1038/s41746-021-00488-3},
doi = {10.1038/S41746-021-00488-3},
timestamp = {Tue, 26 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/XuWKSHGKMNWGKWI21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PachecoRWPCSMGG21,
author = {Jennifer A. Pacheco and
Luke V. Rasmussen and
Ken Wiley and
Thomas N. Person and
David J. Cronkite and
Sunghwan Sohn and
Shawn N. Murphy and
Justin H. Gundelach and
Vivian S. Gainer and
Victor M. Castro and
Cong Liu and
Todd Lingren and
Frank D. Mentch and
Agnes S. Sundaresan and
Garrett Eickelberg and
Valerie Willis and
Al'ona Furmanchuk and
Roshan Patel and
David S. Carrell and
Marc S. Williams and
Elizabeth W. Karlson and
Jodell E. Linder and
Yuan Luo and
Chunhua Weng and
Wei{-}Qi Wei},
title = {Evaluation of the Portability of Natural Language Processing-based
Computable Phenotypes in the eMERGE Network},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t004-1.4626008/t004-1.4626009/3577692-1.4626178/3577271-1.4626175},
timestamp = {Wed, 17 Apr 2024 11:46:53 +0200},
biburl = {https://dblp.org/rec/conf/amia/PachecoRWPCSMGG21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PichonISMW21,
author = {Adrienne Pichon and
Betina Ross S. Idnay and
Rebecca Schnall and
Karen Marder and
Chunhua Weng},
title = {Cognitive Function Characterization Using Electronic Health Records
Notes},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t003-1.4626466/t003-1.4626467/3577690-1.4626558/3576798-1.4626555},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PichonISMW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SpotnitzPHWN21,
author = {Matthew E. Spotnitz and
Jason Patterson and
Vojtech Huser and
Chunhua Weng and
Karthik Natarajan},
title = {Harmonization of Measurement Codes for Concept-Oriented Lab Data Retrieval},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t004-1.4626008/t004-1.4626009/3631453-1.4626109/3577108-1.4626106},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SpotnitzPHWN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/LiWGCLWX21,
author = {Jianfu Li and
Qiang Wei and
Omid Ghiasvand and
Miao Chen and
Victor S. Lobanov and
Chunhua Weng and
Hua Xu},
title = {Study of Pre-trained Language Models for Named Entity Recognition
in Clinical Trial Eligibility Criteria from Multiple Corpora},
booktitle = {9th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2021, Victoria, BC, Canada, August 9-12, 2021},
pages = {511--512},
publisher = {{IEEE}},
year = {2021},
url = {https://doi.org/10.1109/ICHI52183.2021.00095},
doi = {10.1109/ICHI52183.2021.00095},
timestamp = {Wed, 20 Oct 2021 16:44:24 +0200},
biburl = {https://dblp.org/rec/conf/ichi/LiWGCLWX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/SpotnitzPHWN21,
author = {Matthew E. Spotnitz and
Jason Patterson and
Vojtech Huser and
Chunhua Weng and
Karthik Natarajan},
editor = {Paula Otero and
Philip Scott and
Susan Z. Martin and
Elaine Huesing},
title = {Harmonization of Measurement Codes for Concept-Oriented Lab Data Retrieval},
booktitle = {{MEDINFO} 2021: One World, One Health - Global Partnership for Digital
Innovation - Proceedings of the 18th World Congress on Medical and
Health Informatics, Virtual Event, 2-4 October 2021},
series = {Studies in Health Technology and Informatics},
volume = {290},
pages = {12--16},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI220022},
doi = {10.3233/SHTI220022},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/SpotnitzPHWN21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/TurfahLSKW21,
author = {Ali Turfah and
Hao Liu and
Latoya A. Stewart and
Tian Kang and
Chunhua Weng},
editor = {Paula Otero and
Philip Scott and
Susan Z. Martin and
Elaine Huesing},
title = {Extending {PICO} with Observation Normalization for Evidence Computing},
booktitle = {{MEDINFO} 2021: One World, One Health - Global Partnership for Digital
Innovation - Proceedings of the 18th World Congress on Medical and
Health Informatics, Virtual Event, 2-4 October 2021},
series = {Studies in Health Technology and Informatics},
volume = {290},
pages = {268--272},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI220076},
doi = {10.3233/SHTI220076},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/TurfahLSKW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/LiuLTRBLKSW21,
author = {Cong Liu and
Hao Liu and
Casey N. Ta and
James Roger and
Alex Butler and
Junghwan Lee and
Jaehyun Kim and
Ning Shang and
Chunhua Weng},
editor = {Paula Otero and
Philip Scott and
Susan Z. Martin and
Elaine Huesing},
title = {Evaluation of Criteria2Query: Towards Augmented Intelligence for Cohort
Identification},
booktitle = {{MEDINFO} 2021: One World, One Health - Global Partnership for Digital
Innovation - Proceedings of the 18th World Congress on Medical and
Health Informatics, Virtual Event, 2-4 October 2021},
series = {Studies in Health Technology and Informatics},
volume = {290},
pages = {297--300},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI220082},
doi = {10.3233/SHTI220082},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/LiuLTRBLKSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/SunTBLFW21,
author = {Yingcheng Sun and
Jiaqi Tang and
Alex Butler and
Cong Liu and
Yilu Fang and
Chunhua Weng},
editor = {Paula Otero and
Philip Scott and
Susan Z. Martin and
Elaine Huesing},
title = {Interactive Similarity-Based Search of Clinical Trials},
booktitle = {{MEDINFO} 2021: One World, One Health - Global Partnership for Digital
Innovation - Proceedings of the 18th World Congress on Medical and
Health Informatics, Virtual Event, 2-4 October 2021},
series = {Studies in Health Technology and Informatics},
volume = {290},
pages = {309--313},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI220085},
doi = {10.3233/SHTI220085},
timestamp = {Mon, 23 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/SunTBLFW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/ChenLLBKSW21,
author = {Zhehuan Chen and
Hao Liu and
Stan Liao and
Marguerite Bernard and
Tian Kang and
Latoya A. Stewart and
Chunhua Weng},
editor = {Paula Otero and
Philip Scott and
Susan Z. Martin and
Elaine Huesing},
title = {Representation and Normalization of Complex Interventions for Evidence
Computing},
booktitle = {{MEDINFO} 2021: One World, One Health - Global Partnership for Digital
Innovation - Proceedings of the 18th World Congress on Medical and
Health Informatics, Virtual Event, 2-4 October 2021},
series = {Studies in Health Technology and Informatics},
volume = {290},
pages = {592--596},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI220146},
doi = {10.3233/SHTI220146},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/ChenLLBKSW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/LinLMW21,
author = {Fengyang Lin and
Hao Liu and
Paul Moon and
Chunhua Weng},
editor = {Paula Otero and
Philip Scott and
Susan Z. Martin and
Elaine Huesing},
title = {A Sample Size Extractor for {RCT} Reports},
booktitle = {{MEDINFO} 2021: One World, One Health - Global Partnership for Digital
Innovation - Proceedings of the 18th World Congress on Medical and
Health Informatics, Virtual Event, 2-4 October 2021},
series = {Studies in Health Technology and Informatics},
volume = {290},
pages = {617--621},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI220151},
doi = {10.3233/SHTI220151},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/LinLMW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/LeeLTW21,
author = {Junghwan Lee and
Cong Liu and
Casey N. Ta and
Chunhua Weng},
editor = {Paula Otero and
Philip Scott and
Susan Z. Martin and
Elaine Huesing},
title = {Towards Better Diagnosis Prediction Using Bidirectional Recurrent
Neural Networks},
booktitle = {{MEDINFO} 2021: One World, One Health - Global Partnership for Digital
Innovation - Proceedings of the 18th World Congress on Medical and
Health Informatics, Virtual Event, 2-4 October 2021},
series = {Studies in Health Technology and Informatics},
volume = {290},
pages = {1054--1055},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI220264},
doi = {10.3233/SHTI220264},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/LeeLTW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/ChenLBOW21,
author = {Zhehuan Chen and
Hao Liu and
Alex M. Butler and
Anna Ostropolets and
Chunhua Weng},
editor = {John Mantas and
Lacramioara Stoicu{-}Tivadar and
Catherine E. Chronaki and
Arie Hasman and
Patrick Weber and
Parisis Gallos and
Mihaela Marcella Vida and
Emmanouil Zoulias and
Oana Sorina Chirila},
title = {Potential Role of Clinical Trial Eligibility Criteria in Electronic
Phenotyping},
booktitle = {Public Health and Informatics - Proceedings of {MIE} 2021, Medical
Informatics Europe, Virtual Event, May 29-31, 2021},
series = {Studies in Health Technology and Informatics},
volume = {281},
pages = {148--152},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI210138},
doi = {10.3233/SHTI210138},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mie/ChenLBOW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/FangKIGCSLLYW21,
author = {Yilu Fang and
Jae Hyun Kim and
Betina Ross S. Idnay and
Rebeca Aragon Garcia and
Carmen E. Castillo and
Yingcheng Sun and
Hao Liu and
Cong Liu and
Chi Yuan and
Chunhua Weng},
editor = {John Mantas and
Lacramioara Stoicu{-}Tivadar and
Catherine E. Chronaki and
Arie Hasman and
Patrick Weber and
Parisis Gallos and
Mihaela Marcella Vida and
Emmanouil Zoulias and
Oana Sorina Chirila},
title = {Participatory Design of a Clinical Trial Eligibility Criteria Simplification
Method},
booktitle = {Public Health and Informatics - Proceedings of {MIE} 2021, Medical
Informatics Europe, Virtual Event, May 29-31, 2021},
series = {Studies in Health Technology and Informatics},
volume = {281},
pages = {984--988},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI210325},
doi = {10.3233/SHTI210325},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/mie/FangKIGCSLLYW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2112-10821,
author = {Yu Deng and
Jennifer A. Pacheco and
Anh H. Chung and
Chengsheng Mao and
Joshua C. Smith and
Juan Zhao and
Wei{-}Qi Wei and
April Barnado and
Chunhua Weng and
Cong Liu and
Adam Cordon and
Jingzhi Yu and
Yacob Tedla and
Abel N. Kho and
Rosalind Ramsey{-}Goldman and
Theresa Walunas and
Yuan Luo},
title = {Natural language processing to identify lupus nephritis phenotype
in electronic health records},
journal = {CoRR},
volume = {abs/2112.10821},
year = {2021},
url = {https://arxiv.org/abs/2112.10821},
eprinttype = {arXiv},
eprint = {2112.10821},
timestamp = {Tue, 11 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2112-10821.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/BurgermasterSDS20,
author = {Marissa Burgermaster and
Jung Hoon Son and
Patricia G. Davidson and
Arlene M. Smaldone and
Gilad Kuperman and
Daniel J. Feller and
Katherine Gardner Burt and
Matthew E. Levine and
David J. Albers and
Chunhua Weng and
Lena Mamykina},
title = {A new approach to integrating patient-generated data with expert knowledge
for personalized goal setting: {A} pilot study},
journal = {Int. J. Medical Informatics},
volume = {139},
pages = {104158},
year = {2020},
url = {https://doi.org/10.1016/j.ijmedinf.2020.104158},
doi = {10.1016/J.IJMEDINF.2020.104158},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/BurgermasterSDS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/RogersMGGW20,
author = {James R. Rogers and
Hollis Mills and
Lisa V. Grossman and
Andrew Goldstein and
Chunhua Weng},
title = {Understanding the nature and scope of clinical research commentaries
in PubMed},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {3},
pages = {449--456},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocz209},
doi = {10.1093/JAMIA/OCZ209},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/RogersMGGW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/YuanWSLZW20,
author = {Chi Yuan and
Yongli Wang and
Ning Shang and
Ziran Li and
Ruxin Zhao and
Chunhua Weng},
title = {A graph-based method for reconstructing entities from coordination
ellipsis in medical text},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {9},
pages = {1364--1373},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa109},
doi = {10.1093/JAMIA/OCAA109},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/YuanWSLZW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/OstropoletsRRSH20,
author = {Anna Ostropolets and
Christian G. Reich and
Patrick B. Ryan and
Ning Shang and
George Hripcsak and
Chunhua Weng},
title = {Adapting electronic health records-derived phenotypes to claims data:
Lessons learned in using limited clinical data for phenotyping},
journal = {J. Biomed. Informatics},
volume = {102},
pages = {103363},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2019.103363},
doi = {10.1016/J.JBI.2019.103363},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/OstropoletsRRSH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WengSH20,
author = {Chunhua Weng and
Nigam H. Shah and
George Hripcsak},
title = {Deep phenotyping: Embracing complexity and temporality - Towards scalability,
portability, and interoperability},
journal = {J. Biomed. Informatics},
volume = {105},
pages = {103433},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2020.103433},
doi = {10.1016/J.JBI.2020.103433},
timestamp = {Mon, 15 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/WengSH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/PengZHLWGSWZ20,
author = {Jacqueline Peng and
Mengge Zhao and
James M. Havrilla and
Cong Liu and
Chunhua Weng and
Whitney Guthrie and
Robert Schultz and
Kai Wang and
Yunyun Zhou},
title = {Natural language processing {(NLP)} tools in extracting biomedical
concepts from research articles: a case study on autism spectrum disorder},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {20-S},
number = {11},
pages = {322},
year = {2020},
url = {https://doi.org/10.1186/s12911-020-01352-2},
doi = {10.1186/S12911-020-01352-2},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/midm/PengZHLWGSWZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/AverittWRP20,
author = {Amelia J. Averitt and
Chunhua Weng and
Patrick B. Ryan and
Adler J. Perotte},
title = {Translating evidence into practice: eligibility criteria fail to eliminate
clinically significant differences between real-world and study populations},
journal = {npj Digit. Medicine},
volume = {3},
year = {2020},
url = {https://doi.org/10.1038/s41746-020-0277-8},
doi = {10.1038/S41746-020-0277-8},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/AverittWRP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ButlerLSBMGFCGW20,
author = {Alex M. Butler and
Junghwan Lee and
Yat S. So and
Linda Busacca and
Karen Marder and
Henry N. Ginsberg and
Dianne Frederick and
Ismael Castaneda and
Elizabeth Guerrido and
Chunhua Weng},
title = {Impact of {IMPACT:} Longitudinal Analysis of an Integrated Participant
Scheduling System in a Clinical Research Setting},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t003-1.4606204/t003-1.4606205/3410540-1.4606572/3410549-1.4606569},
timestamp = {Wed, 17 Apr 2024 11:47:01 +0200},
biburl = {https://dblp.org/rec/conf/amia/ButlerLSBMGFCGW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuJPW020,
author = {Hongfang Liu and
Xiaoqian Jiang and
Serguei V. S. Pakhomov and
Chunhua Weng and
Hua Xu},
title = {The Open Health Natural Language Processing Collaboratory},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t002-1.4606605/t002-1.4606606/3417888-1.4606670/3410232-1.4606667},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuJPW020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuYBSW20,
author = {Hao Liu and
Chi Yuan and
Alex M. Butler and
Yingcheng Sun and
Chunhua Weng},
title = {Potential Role of Clinical Trial Eligibility Criteria in Electronic
Phenotyping},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3410528-1.4606042/3416650-1.4606039},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuYBSW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/OstropoletsRRWM20,
author = {Anna Ostropolets and
Christian G. Reich and
Patrick B. Ryan and
Chunhua Weng and
Anthony Molinaro and
Frank J. DeFalco and
Jitendra Jonnagaddala and
Siaw{-}Teng Liaw and
Hokyun Jeon and
Rae Woong Park and
Matthew E. Spotnitz and
Karthik Natarajan and
Kristin Kostka and
George Argyriou and
Robert T. Miller and
Andrew E. Williams and
Evan Minty and
Jos{\'{e}} D. Posada and
George Hripcsak},
title = {Characterizing database granularity using {SNOMED-CT} hierarchy},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t003-1.4606204/t003-1.4606205/3417229-1.4606350/3416797-1.4606347},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/OstropoletsRRWM20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RogersLZRHW20,
author = {James R. Rogers and
Junghwan Lee and
Ziheng Zhou and
Patrick B. Ryan and
George Hripcsak and
Chunhua Weng},
title = {Contemporary Use of Real World Data for Clinical Trial Conduct},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3416783-1.4605955/3411548-1.4605952},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RogersLZRHW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/mie/LiCYW20,
author = {Ziran Li and
Huanyao Chen and
Chi Yuan and
Chunhua Weng},
editor = {Louise Bilenberg Pape{-}Haugaard and
Christian Lovis and
Inge Cort Madsen and
Patrick Weber and
Per Hostrup Nielsen and
Philip Scott},
title = {How Have Experimental Cancer Interventions Evolved over Time?},
booktitle = {Digital Personalized Health and Medicine - Proceedings of {MIE} 2020,
Medical Informatics Europe, Geneva, Switzerland, April 28 - May 1,
2020},
series = {Studies in Health Technology and Informatics},
volume = {270},
pages = {252--256},
publisher = {{IOS} Press},
year = {2020},
url = {https://doi.org/10.3233/SHTI200161},
doi = {10.3233/SHTI200161},
timestamp = {Thu, 04 Apr 2024 17:06:52 +0200},
biburl = {https://dblp.org/rec/conf/mie/LiCYW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/BeaucheminMSHWS19,
author = {Melissa Beauchemin and
Meghan T. Murray and
Lillian Sung and
Dawn L. Hershman and
Chunhua Weng and
Rebecca Schnall},
title = {Clinical decision support for therapeutic decision-making in cancer:
{A} systematic review},
journal = {Int. J. Medical Informatics},
volume = {130},
year = {2019},
url = {https://doi.org/10.1016/j.ijmedinf.2019.07.019},
doi = {10.1016/J.IJMEDINF.2019.07.019},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/BeaucheminMSHWS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/YuanRTGLHMJSKW19,
author = {Chi Yuan and
Patrick B. Ryan and
Casey N. Ta and
Yixuan Guo and
Ziran Li and
Jill Hardin and
Rupa Makadia and
Peng Jin and
Ning Shang and
Tian Kang and
Chunhua Weng},
title = {Criteria2Query: a natural language interface to clinical databases
for cohort definition},
journal = {J. Am. Medical Informatics Assoc.},
volume = {26},
number = {4},
pages = {294--305},
year = {2019},
url = {https://doi.org/10.1093/jamia/ocy178},
doi = {10.1093/JAMIA/OCY178},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/YuanRTGLHMJSKW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuYBCLTW19,
author = {Cong Liu and
Chi Yuan and
Alex M. Butler and
Richard D. Carvajal and
Ziran Ryan Li and
Casey N. Ta and
Chunhua Weng},
title = {DQueST: dynamic questionnaire for search of clinical trials},
journal = {J. Am. Medical Informatics Assoc.},
volume = {26},
number = {11},
pages = {1333--1343},
year = {2019},
url = {https://doi.org/10.1093/jamia/ocz121},
doi = {10.1093/JAMIA/OCZ121},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/LiuYBCLTW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ChiLTLKDWL19,
author = {Shengqiang Chi and
Xinhang Li and
Yu Tian and
Jun Li and
Xiang{-}Xing Kong and
Ke{-}Feng Ding and
Chunhua Weng and
Jing{-}Song Li},
title = {Semi-supervised learning to improve generalizability of risk prediction
models},
journal = {J. Biomed. Informatics},
volume = {92},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103117},
doi = {10.1016/J.JBI.2019.103117},
timestamp = {Fri, 23 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/ChiLTLKDWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HripcsakSPRLBCC19,
author = {George Hripcsak and
Ning Shang and
Peggy L. Peissig and
Luke V. Rasmussen and
Cong Liu and
Barbara Benoit and
Robert J. Carroll and
David S. Carrell and
Joshua C. Denny and
Ozan Dikilitas and
Vivian S. Gainer and
Kayla Marie Howell and
Jeffrey G. Klann and
Iftikhar J. Kullo and
Todd Lingren and
Frank D. Mentch and
Shawn N. Murphy and
Karthik Natarajan and
Chunhua Weng},
title = {Facilitating phenotype transfer using a common data model},
journal = {J. Biomed. Informatics},
volume = {96},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103253},
doi = {10.1016/J.JBI.2019.103253},
timestamp = {Wed, 22 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HripcsakSPRLBCC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LyudovykSTHMW19,
author = {Olga Lyudovyk and
Yufeng Shen and
Nicholas P. Tatonetti and
Susan J. Hsiao and
Mahesh M. Mansukhani and
Chunhua Weng},
title = {Pathway analysis of genomic pathology tests for prognostic cancer
subtyping},
journal = {J. Biomed. Informatics},
volume = {98},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103286},
doi = {10.1016/J.JBI.2019.103286},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LyudovykSTHMW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ShangLRTCBLDMCW19,
author = {Ning Shang and
Cong Liu and
Luke V. Rasmussen and
Casey N. Ta and
Robert J. Carroll and
Barbara Benoit and
Todd Lingren and
Ozan Dikilitas and
Frank D. Mentch and
David S. Carrell and
Wei{-}Qi Wei and
Yuan Luo and
Vivian S. Gainer and
Iftikhar J. Kullo and
Jennifer A. Pacheco and
Hakon Hakonarson and
Theresa L. Walunas and
Joshua C. Denny and
Chunhua Weng},
title = {Making work visible for electronic phenotype implementation: Lessons
learned from the eMERGE network},
journal = {J. Biomed. Informatics},
volume = {99},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103293},
doi = {10.1016/J.JBI.2019.103293},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/ShangLRTCBLDMCW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LiuTRLLBSKWSLEF19,
author = {Cong Liu and
Casey N. Ta and
James R. Rogers and
Ziran Li and
Junghwan Lee and
Alex M. Butler and
Ning Shang and
Fabricio Sampaio Peres Kury and
Liwei Wang and
Feichen Shen and
Hongfang Liu and
Lyudmila Ena and
Carol Friedman and
Chunhua Weng},
title = {Ensembles of natural language processing systems for portable phenotyping
solutions},
journal = {J. Biomed. Informatics},
volume = {100},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103318},
doi = {10.1016/J.JBI.2019.103318},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LiuTRLLBSKWSLEF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/WengFRH19,
author = {Chunhua Weng and
Carol Friedman and
Casey A. Rommel and
John F. Hurdle},
title = {A two-site survey of medical center personnel's willingness to share
clinical data for research: implications for reproducible health {NLP}
research},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19-S},
number = {3},
pages = {5--12},
year = {2019},
url = {https://doi.org/10.1186/s12911-019-0778-z},
doi = {10.1186/S12911-019-0778-Z},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/WengFRH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/HanauerMVSLW19,
author = {David A. Hanauer and
Qiaozhu Mei and
V. G. Vinod Vydiswaran and
Karandeep Singh and
Zach Landis{-}Lewis and
Chunhua Weng},
title = {Complexities, variations, and errors of numbering within clinical
notes: the potential impact on information extraction and cohort-identification},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19-S},
number = {3},
pages = {59--69},
year = {2019},
url = {https://doi.org/10.1186/s12911-019-0784-1},
doi = {10.1186/S12911-019-0784-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/HanauerMVSLW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/LiuKLTWW19,
author = {Cong Liu and
Fabricio Sampaio Peres Kury and
Ziran Li and
Casey N. Ta and
Kai Wang and
Chunhua Weng},
title = {Doc2Hpo: a web application for efficient and accurate {HPO} concept
curation},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Webserver-Issue},
pages = {W566--W570},
year = {2019},
url = {https://doi.org/10.1093/nar/gkz386},
doi = {10.1093/NAR/GKZ386},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/LiuKLTWW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BeaucheminSW19,
author = {Melissa Beauchemin and
Rebecca Schnall and
Chunhua Weng},
title = {Completeness and Concordance in Electronic Health Record {(EHR)} Documentation
of Chemotherapy-Induced Nausea and Vomiting {(CINV)} in Pediatric
Cancer},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3202972-1.4574451/3200262-1.4574448},
timestamp = {Wed, 17 Apr 2024 11:47:08 +0200},
biburl = {https://dblp.org/rec/conf/amia/BeaucheminSW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KuryFYSCW19,
author = {Fabricio Sampaio Peres Kury and
Li{-}heng Fu and
Chi Yuan and
Ida Sim and
Simona Carini and
Chunhua Weng},
title = {Hidden Gaps in Using Common Data Models to Achieve Interoperability
Between Electronic Phenotypes and Clinical Data},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t006-1.4574499/t006-1.4574500/3200438-1.4574681/3203439-1.4574678},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/KuryFYSCW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangWLSBWL19,
author = {Yanshan Wang and
Andrew Wen and
Sijia Liu and
Jennifer L. St. Sauver and
Adil E. Bharucha and
Chunhua Weng and
Hongfang Liu},
title = {Clinical Use of an Information Retrieval Framework for Cohort Discovery
from Electronic Health Records},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3203339-1.4573581/3201756-1.4573578},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangWLSBWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WynnWLSBWC19,
author = {Julia Wynn and
Wei Wei and
Xinhang Li and
Yat So and
Suzanne R. Bakken and
Chunhua Weng and
Wendy K. Chung},
title = {User engagement with web-based genomics education videos and implications
for designing scalable patient education materials},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t004-1.4574923/t004-1.4574924/3201690-1.4574943/3190483-1.4574940},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WynnWLSBWC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WeiTPW19,
author = {Duo Helen Wei and
Casey N. Ta and
Harold Alan Pincus and
Chunhua Weng},
title = {Combining Clinical Data and Domain Knowledge for Analyzing Mental
Disorder Concept Relatedness and Usage},
booktitle = {2019 {IEEE} International Conference on Healthcare Informatics, {ICHI}
2019, Xi'an, China, June 10-13, 2019},
pages = {1--6},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/ICHI.2019.8904772},
doi = {10.1109/ICHI.2019.8904772},
timestamp = {Wed, 27 Nov 2019 14:42:06 +0100},
biburl = {https://dblp.org/rec/conf/ichi/WeiTPW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/KangZW19,
author = {Tian Kang and
Shirui Zou and
Chunhua Weng},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Pretraining to Recognize {PICO} Elements from Randomized Controlled
Trial Literature},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {188--192},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190209},
doi = {10.3233/SHTI190209},
timestamp = {Wed, 03 Feb 2021 08:34:29 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/KangZW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/TaW19,
author = {Casey N. Ta and
Chunhua Weng},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Detecting Systemic Data Quality Issues in Electronic Health Records},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {383--387},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190248},
doi = {10.3233/SHTI190248},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/TaW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/WeiKPW19,
author = {Duo Helen Wei and
Tian Kang and
Harold Alan Pincus and
Chunhua Weng},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Construction of Disease Similarity Networks Using Concept Embedding
and Ontology},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {442--446},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190260},
doi = {10.3233/SHTI190260},
timestamp = {Mon, 23 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/WeiKPW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/LyudovykW19,
author = {Olga Lyudovyk and
Chunhua Weng},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {SNOMEDtxt: Natural Language Generation from {SNOMED} Ontology},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {1263--1267},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190429},
doi = {10.3233/SHTI190429},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/LyudovykW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/WengHFH19,
author = {Chunhua Weng and
Tianyong Hao and
Carol Friedman and
John F. Hurdle},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Crowdsourcing Public Opinion for Sharing Medical Records for the Advancement
of Science},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {1393--1397},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190456},
doi = {10.3233/SHTI190456},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/WengHFH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/WengMHC19,
author = {Chunhua Weng and
Amy K. Mir and
David A. Hanauer and
James J. Cimino},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Dialogue Analysis for Clinical Data Query Mediation},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {1398--1402},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190457},
doi = {10.3233/SHTI190457},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/WengMHC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/ZhangVVBVLHDSJC19,
author = {Xinyuan Zhang and
Yogasudha Veturi and
Shefali Setia Verma and
William Bone and
Anurag Verma and
Anastasia Lucas and
Scott J. Hebbring and
Joshua C. Denny and
Ian B. Stanaway and
Gail P. Jarvik and
David R. Crosslin and
Eric B. Larson and
Laura Rasmussen{-}Torvik and
Sarah A. Pendergrass and
Jordan W. Smoller and
Hakon Hakonarson and
Patrick Sleiman and
Chunhua Weng and
David Fasel and
Wei{-}Qi Wei and
Iftikhar J. Kullo and
Daniel J. Schaid and
Wendy K. Chung and
Marylyn D. Ritchie},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Detecting potential pleiotropy across cardiovascular and neurological
diseases using univariate, bivariate, and multivariate methods on
43, 870 individuals from the eMERGE network},
booktitle = {Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2019},
pages = {272--283},
year = {2019},
url = {http://psb.stanford.edu/psb-online/proceedings/psb19/zhang\_x.pdf},
timestamp = {Thu, 06 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/ZhangVVBVLHDSJC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SenGCSKYRW18,
author = {Anando Sen and
Andrew Goldstein and
Shreya Chakrabarti and
Ning Shang and
Tian Kang and
Anil Yaman and
Patrick B. Ryan and
Chunhua Weng},
title = {The representativeness of eligible patients in type 2 diabetes trials:
a case study using {GIST} 2.0},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {3},
pages = {239--247},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocx091},
doi = {10.1093/JAMIA/OCX091},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SenGCSKYRW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ShangWH18,
author = {Ning Shang and
Chunhua Weng and
George Hripcsak},
title = {A conceptual framework for evaluating data suitability for observational
studies},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {3},
pages = {248--258},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocx095},
doi = {10.1093/JAMIA/OCX095},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ShangWH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/AronsonBAGVCMWW18,
author = {Samuel J. Aronson and
Lawrence J. Babb and
Darren C. Ames and
Richard A. Gibbs and
Eric Venner and
John J. Connelly and
Keith Marsolo and
Chunhua Weng and
Marc S. Williams and
Andrea L. Hartzler and
Wayne H. Liang and
James D. Ralston and
Emily Beth Devine and
Shawn N. Murphy and
Christopher G. Chute and
Pedro J. Caraballo and
Iftikhar J. Kullo and
Robert R. Freimuth and
Luke V. Rasmussen and
Firas H. Wehbe and
Josh F. Peterson and
Jamie R. Robinson and
Ken Wiley and
Casey Overby Taylor and
eMERGE Network EHRI Working Group},
title = {Empowering genomic medicine by establishing critical sequencing result
data flows: the eMERGE example},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {10},
pages = {1375--1381},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocy051},
doi = {10.1093/JAMIA/OCY051},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/AronsonBAGVCMWW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WengGYZ18,
author = {Chunhua Weng and
Andrew Goldstein and
Chi Yuan and
Zhiping Zhou},
title = {The ranking of scientists},
journal = {J. Biomed. Informatics},
volume = {79},
pages = {145--146},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.02.006},
doi = {10.1016/J.JBI.2018.02.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WengGYZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WengSH18,
author = {Chunhua Weng and
Nigam Shah and
George Hripcsak},
title = {Call for papers: Deep phenotyping for Precision Medicine},
journal = {J. Biomed. Informatics},
volume = {87},
pages = {66--67},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.09.017},
doi = {10.1016/J.JBI.2018.09.017},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WengSH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/GrossmanMHWV18,
author = {Lisa V. Grossman and
Elliot G. Mitchell and
George Hripcsak and
Chunhua Weng and
David K. Vawdrey},
title = {A method for harmonization of clinical abbreviation and acronym sense
inventories},
journal = {J. Biomed. Informatics},
volume = {88},
pages = {62--69},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.11.004},
doi = {10.1016/J.JBI.2018.11.004},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/GrossmanMHWV18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ChiuSW18,
author = {Po{-}Hsiang Chiu and
Ning Shang and
Chunhua Weng},
title = {Sequencing {EHR} for Disease Subtyping},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2976661-1.4263558/2976738-1.4263555},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/ChiuSW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/CiminoLW18,
author = {James J. Cimino and
Ziran Li and
Chunhua Weng},
title = {An Exploration of the Terminology of Clinical Cognition and Reasoning},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t004-1.4263758/t004-1.4263759/2977344-1.4264033/2977345-1.4264030},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/CiminoLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GoldBMJKSHWRSEG18,
author = {Sigfried Gold and
Andrea Batch and
Robert C. McClure and
Guoqian Jiang and
Hadi Kharrazi and
Rishi Saripalle and
Vojtech Huser and
Chunhua Weng and
Nancy K. Roderer and
Ana Szarfman and
Niklas Elmqvist and
David Gotz},
title = {Clinical Concept Value Sets and Interoperability in Health Data Analytics},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t004-1.4263758/t004-1.4263759/2976547-1.4263982/2973630-1.4263979},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/GoldBMJKSHWRSEG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuYPHW18,
author = {Cong Liu and
Chi Yuan and
Eric Pua and
Paul Harris and
Chunhua Weng},
title = {Dynamic Questionnaire Generation for Efficient Patient Search of Trials},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2977209-1.4263405/2975791-1.4263402},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuYPHW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/dongZXW18,
author = {Xiao Dong and
Yaoyun Zhang and
Hua Xu and
Chunhua Weng},
title = {Guideline-driven data quality assessment- {A} case study of warfarin
management},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2977254-1.4263016/2977057-1.4263013},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/dongZXW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/HanauerMVSLW18,
author = {David A. Hanauer and
Qiaozhu Mei and
V. G. Vinod Vydiswaran and
Karandeep Singh and
Zach Landis{-}Lewis and
Chunhua Weng},
title = {Numerical Age Variations within Clinical Notes: The Potential Impact
on De-Identification and Information Extraction},
booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
{ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
pages = {66--67},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICHI-W.2018.00022},
doi = {10.1109/ICHI-W.2018.00022},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/HanauerMVSLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WengFRH18,
author = {Chunhua Weng and
Carol Friedman and
Casey A. Rommel and
John F. Hurdle},
title = {A Two-Site Survey of Medical Center Personnel's Willingness to Share
Clinical Data for Research: Implications for Reproducible Health {NLP}
Research},
booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
{ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
pages = {78--79},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICHI-W.2018.00028},
doi = {10.1109/ICHI-W.2018.00028},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/WengFRH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/PatelW18,
author = {Chintan Patel and
Chunhua Weng},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Clinical Data and Information Models},
booktitle = {Encyclopedia of Database Systems, Second Edition},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-1-4614-8265-9\_55},
doi = {10.1007/978-1-4614-8265-9\_55},
timestamp = {Thu, 14 Feb 2019 09:43:36 +0100},
biburl = {https://dblp.org/rec/reference/db/PatelW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/PatelW18a,
author = {Chintan Patel and
Chunhua Weng},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Clinical Data Quality and Validation},
booktitle = {Encyclopedia of Database Systems, Second Edition},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-1-4614-8265-9\_56},
doi = {10.1007/978-1-4614-8265-9\_56},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/db/PatelW18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/PatelW18b,
author = {Chintan Patel and
Chunhua Weng},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Quality and Trust of Information Content and Credentialing},
booktitle = {Encyclopedia of Database Systems, Second Edition},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-1-4614-8265-9\_288},
doi = {10.1007/978-1-4614-8265-9\_288},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/db/PatelW18b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/PatelW18c,
author = {Chintan Patel and
Chunhua Weng},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Reference Knowledge},
booktitle = {Encyclopedia of Database Systems, Second Edition},
publisher = {Springer},
year = {2018},
url = {https://doi.org/10.1007/978-1-4614-8265-9\_303},
doi = {10.1007/978-1-4614-8265-9\_303},
timestamp = {Thu, 14 Feb 2019 00:00:00 +0100},
biburl = {https://dblp.org/rec/reference/db/PatelW18c.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/SharmaSTWCJ17,
author = {Deepak K. Sharma and
Harold R. Solbrig and
Cui Tao and
Chunhua Weng and
Christopher G. Chute and
Guoqian Jiang},
title = {Building a semantic web-based metadata repository for facilitating
detailed clinical modeling in cancer genome studies},
journal = {J. Biomed. Semant.},
volume = {8},
number = {1},
pages = {19:1--19:11},
year = {2017},
url = {https://doi.org/10.1186/s13326-017-0130-4},
doi = {10.1186/S13326-017-0130-4},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/SharmaSTWCJ17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/LuoCWW17,
author = {Jake Luo and
Weiheng Chen and
Min Wu and
Chunhua Weng},
title = {Systematic data ingratiation of clinical trial recruitment locations
for geographic-based query and visualization},
journal = {Int. J. Medical Informatics},
volume = {108},
pages = {85--91},
year = {2017},
url = {https://doi.org/10.1016/j.ijmedinf.2017.10.003},
doi = {10.1016/J.IJMEDINF.2017.10.003},
timestamp = {Wed, 02 Mar 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/LuoCWW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KangZTHREW17,
author = {Tian Kang and
Shaodian Zhang and
Youlan Tang and
Gregory William Hruby and
Alexander Rusanov and
No{\'{e}}mie Elhadad and
Chunhua Weng},
title = {EliIE: An open-source information extraction system for clinical trial
eligibility criteria},
journal = {J. Am. Medical Informatics Assoc.},
volume = {24},
number = {6},
pages = {1062--1071},
year = {2017},
url = {https://doi.org/10.1093/jamia/ocx019},
doi = {10.1093/JAMIA/OCX019},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KangZTHREW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/GoldsteinVW17,
author = {Andrew Goldstein and
Eric Venker and
Chunhua Weng},
title = {Evidence appraisal: a scoping review, conceptual framework, and research
agenda},
journal = {J. Am. Medical Informatics Assoc.},
volume = {24},
number = {6},
pages = {1192--1203},
year = {2017},
url = {https://doi.org/10.1093/jamia/ocx050},
doi = {10.1093/JAMIA/OCX050},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/GoldsteinVW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jhir/ChakrabartiSHHR17,
author = {Shreya Chakrabarti and
Anando Sen and
Vojtech Huser and
Gregory William Hruby and
Alexander Rusanov and
David J. Albers and
Chunhua Weng},
title = {An Interoperable Similarity-based Cohort Identification Method Using
the {OMOP} Common Data Model Version 5.0},
journal = {J. Heal. Informatics Res.},
volume = {1},
number = {1},
pages = {1--18},
year = {2017},
url = {https://doi.org/10.1007/s41666-017-0005-6},
doi = {10.1007/S41666-017-0005-6},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jhir/ChakrabartiSHHR17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AverittWP17,
author = {Amelia J. Averitt and
Chunhua Weng and
Adler J. Perotte},
title = {Clinical Trial Eligibility Criteria Fail to Meet Burden of Generalizability},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2728588-1.4259352/2731331-1.4259349},
timestamp = {Wed, 17 Apr 2024 11:47:24 +0200},
biburl = {https://dblp.org/rec/conf/amia/AverittWP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SonW17,
author = {Jung Hoon Son and
Chunhua Weng},
title = {Discordances between Patient-Reported Family History and Family Histories
in {EHR}},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2727601-1.4259092/2730933-1.4259089},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SonW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/YuanRGJKW17,
author = {Chi Yuan and
Patrick B. Ryan and
Yixuan Guo and
Peng Jin and
Tian Kang and
Chunhua Weng},
title = {Criteria2Query: Automatically Transforming Clinical Research Eligibility
Criteria Text to {OMOP} Common Data Model (CDM)-based Cohort Queries},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t001-1.4259018/f001-1.4259019/2731909-1.4259038/2731285-1.4259035},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/YuanRGJKW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/0002WICTWL17,
author = {Sijia Liu and
Liwei Wang and
Donna M. Ihrke and
Vipin Chaudhary and
Cui Tao and
Chunhua Weng and
Hongfang Liu},
title = {Correlating Lab Test Results in Clinical Notes with Structured Lab
Data: {A} Case Study in HbA1c and Glucose},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t002-1.3521687/t002-1.3521688/a034-1.3521720/a035-1.3521717},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cri/0002WICTWL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/KlannRWWMM17,
author = {Jeffrey G. Klann and
Vijay A. Raghavan and
Chunhua Weng and
Sarah Weiler and
Kenneth D. Mandl and
Shawn N. Murphy},
title = {Needs-Driven Data Completeness Assessment for Clinical Research},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a068-1.3521613/a069-1.3521610},
timestamp = {Tue, 23 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/KlannRWWMM17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/WengAHLFSL17,
author = {Chunhua Weng and
Monika Ahuja and
Kate Fultz Hollis and
Bernie LaSalle and
Shira H. Fischer and
Anthony E. Solomonides and
Judith R. Logan},
title = {Current Challenges in Clinical Research Informatics: {A} Survey of
{AMIA} Clinical Research Informatics Working Group {(CRI-WG)}},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a091-1.3521543/a092-1.3521540},
timestamp = {Tue, 23 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/WengAHLFSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/SiW17,
author = {Yuqi Si and
Chunhua Weng},
editor = {Adi V. Gundlapalli and
Marie{-}Christine Jaulent and
Dongsheng Zhao},
title = {An {OMOP} CDM-Based Relational Database of Clinical Research Eligibility
Criteria},
booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
of the 16th World Congress on Medical and Health Informatics, Hangzhou,
China, 21-25 August 2017},
series = {Studies in Health Technology and Informatics},
volume = {245},
pages = {950--954},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-830-3-950},
doi = {10.3233/978-1-61499-830-3-950},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/SiW17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/HrubyHRMHW16,
author = {Gregory William Hruby and
Julia Hoxha and
Praveen Chandar Ravichandran and
Eneida A. Mendon{\c{c}}a and
David A. Hanauer and
Chunhua Weng},
title = {A data-driven concept schema for defining clinical research data needs},
journal = {Int. J. Medical Informatics},
volume = {91},
pages = {1--9},
year = {2016},
url = {https://doi.org/10.1016/j.ijmedinf.2016.03.008},
doi = {10.1016/J.IJMEDINF.2016.03.008},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/HrubyHRMHW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/HrubyRHPCW16,
author = {Gregory William Hruby and
Luke V. Rasmussen and
David A. Hanauer and
Vimla L. Patel and
James J. Cimino and
Chunhua Weng},
title = {A multi-site cognitive task analysis for biomedical query mediation},
journal = {Int. J. Medical Informatics},
volume = {93},
pages = {74--84},
year = {2016},
url = {https://doi.org/10.1016/j.ijmedinf.2016.06.006},
doi = {10.1016/J.IJMEDINF.2016.06.006},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/HrubyRHPCW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HoxhaCHCHW16,
author = {Julia Hoxha and
Praveen Chandar Ravichandran and
Zhe He and
James J. Cimino and
David A. Hanauer and
Chunhua Weng},
title = {{DREAM:} Classification scheme for dialog acts in clinical research
query mediation},
journal = {J. Biomed. Informatics},
volume = {59},
pages = {89--101},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2015.11.011},
doi = {10.1016/J.JBI.2015.11.011},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HoxhaCHCHW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HeRHWCSW16,
author = {Zhe He and
Patrick B. Ryan and
Julia Hoxha and
Shuang Wang and
Simona Carini and
Ida Sim and
Chunhua Weng},
title = {Multivariate analysis of the population representativeness of related
clinical studies},
journal = {J. Biomed. Informatics},
volume = {60},
pages = {66--76},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.01.007},
doi = {10.1016/J.JBI.2016.01.007},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HeRHWCSW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MaoW16,
author = {Handong Mao and
Chunhua Weng},
title = {Prediction of black box warning by mining patterns of Convergent Focus
Shift in clinical trial study populations using linked public data},
journal = {J. Biomed. Informatics},
volume = {60},
pages = {132--144},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.01.015},
doi = {10.1016/J.JBI.2016.01.015},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/MaoW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HrubyMCW16,
author = {Gregory William Hruby and
Konstantina Matsoukas and
James J. Cimino and
Chunhua Weng},
title = {Facilitating biomedical researchers' interrogation of electronic health
record data: Ideas from outside of biomedical informatics},
journal = {J. Biomed. Informatics},
volume = {60},
pages = {376--384},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.03.004},
doi = {10.1016/J.JBI.2016.03.004},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HrubyMCW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HoxhaW16,
author = {Julia Hoxha and
Chunhua Weng},
title = {Leveraging dialog systems research to assist biomedical researchers'
interrogation of Big Clinical Data},
journal = {J. Biomed. Informatics},
volume = {61},
pages = {176--184},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.04.003},
doi = {10.1016/J.JBI.2016.04.003},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HoxhaW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HoxhaJW16,
author = {Julia Hoxha and
Guoqian Jiang and
Chunhua Weng},
title = {Automated learning of domain taxonomies from text using background
knowledge},
journal = {J. Biomed. Informatics},
volume = {63},
pages = {295--306},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.09.002},
doi = {10.1016/J.JBI.2016.09.002},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HoxhaJW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/SenCGWRW16,
author = {Anando Sen and
Shreya Chakrabarti and
Andrew Goldstein and
Shuang Wang and
Patrick B. Ryan and
Chunhua Weng},
title = {{GIST} 2.0: {A} scalable multi-trait metric for quantifying population
representativeness of individual clinical studies},
journal = {J. Biomed. Informatics},
volume = {63},
pages = {325--336},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.09.003},
doi = {10.1016/J.JBI.2016.09.003},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/SenCGWRW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BrownWVCB16,
author = {William Brown III and
Chunhua Weng and
David K. Vawdrey and
Alex Carballo{-}Dieguez and
Suzanne Bakken},
title = {{SMASH:} {A} Data-driven Informatics Method to Assist Experts in Characterizing
Semantic Heterogeneity among Data Elements},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t007-1.3362675/f007-1.3362676/2499706-1.3362872/2500026-1.3362867},
timestamp = {Wed, 17 Apr 2024 11:47:32 +0200},
biburl = {https://dblp.org/rec/conf/amia/BrownWVCB16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MeystreLXAWPSWZ16,
author = {St{\'{e}}phane M. Meystre and
Hongfang Liu and
Rong Xu and
Sivaram Arabandi and
Kavishwar B. Wagholikar and
Jon Patrick and
Guergana K. Savova and
Chunhua Weng and
Pierre Zweigenbaum and
Dina Demner{-}Fushman and
{\"{O}}zlem Uzuner and
Hua Xu},
title = {Natural Language Processing Working Group Pre-Symposium: Graduate
Student Consortium and 'Hackathon'},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t009-1.3369175/f009-1.3369176/2499034-1.3369215/2499356-1.3369212},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MeystreLXAWPSWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ShangWH16,
author = {Ning Shang and
Chunhua Weng and
George Hripcsak},
title = {A Method for Enhancing the Portability of Electronic Phenotyping Algorithms:
An eMERGE Pilot Study},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t001-1.3365273/f001-1.3365274/2500027-1.3365393/2498212-1.3365388},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ShangWH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/ShangHRW16,
author = {Ning Shang and
George Hripcsak and
Patrick B. Ryan and
Chunhua Weng},
title = {The Applicability of an {EHR} Phenotype for Cohort Identification},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t004-1.3012641/f004-1.3012642/a115-1.3012689/a117-1.3012683},
timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
biburl = {https://dblp.org/rec/conf/cri/ShangHRW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/YamanCSW16,
author = {Anil Yaman and
Shreya Chakrabarti and
Anando Sen and
Chunhua Weng},
title = {How Have Cancer Clinical Trial Eligibility Criteria Evolved Over Time?},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t003-1.3012832/f003-1.3012833/a053-1.3012842/a054-1.3012837},
timestamp = {Thu, 25 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/YamanCSW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WangWLWZ16,
author = {Yuanjia Wang and
Peng Wu and
Ying Liu and
Chunhua Weng and
Donglin Zeng},
title = {Learning Optimal Individualized Treatment Rules from Electronic Health
Record Data},
booktitle = {2016 {IEEE} International Conference on Healthcare Informatics, {ICHI}
2016, Chicago, IL, USA, October 4-7, 2016},
pages = {65--71},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/ICHI.2016.13},
doi = {10.1109/ICHI.2016.13},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/WangWLWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/RusanovPW16,
author = {Alexander Rusanov and
Patric V. Prado and
Chunhua Weng},
title = {Unsupervised Time-Series Clustering Over Lab Data for Automatic Identification
of Uncontrolled Diabetes},
booktitle = {2016 {IEEE} International Conference on Healthcare Informatics, {ICHI}
2016, Chicago, IL, USA, October 4-7, 2016},
pages = {72--80},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/ICHI.2016.14},
doi = {10.1109/ICHI.2016.14},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/RusanovPW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/MaoW16,
author = {Handong Mao and
Chunhua Weng},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Identification of Questionable Exclusion Criteria in Mental Disorder
Clinical Trials Using a Medical Encyclopedia},
booktitle = {Biocomputing 2016: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 4-8, 2016},
pages = {219--230},
year = {2016},
url = {http://psb.stanford.edu/psb-online/proceedings/psb16/ma.pdf},
timestamp = {Fri, 27 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/MaoW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/vldb/2015bigoq,
editor = {Fusheng Wang and
Gang Luo and
Chunhua Weng and
Arijit Khan and
Prasenjit Mitra and
Cong Yu},
title = {Biomedical Data Management and Graph Online Querying - {VLDB} 2015
Workshops, Big-O(Q) and DMAH, Waikoloa, HI, USA, August 31 - September
4, 2015, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {9579},
publisher = {Springer},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-41576-5},
doi = {10.1007/978-3-319-41576-5},
isbn = {978-3-319-41575-8},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/vldb/2015bigoq.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/MiottoW15,
author = {Riccardo Miotto and
Chunhua Weng},
title = {Case-based reasoning using electronic health records efficiently identifies
eligible patients for clinical trials},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {e1},
pages = {e141--e150},
year = {2015},
url = {https://doi.org/10.1093/jamia/ocu050},
doi = {10.1093/JAMIA/OCU050},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/MiottoW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/0001CSW15,
author = {Zhe He and
Simona Carini and
Ida Sim and
Chunhua Weng},
title = {Visual aggregate analysis of eligibility features of clinical trials},
journal = {J. Biomed. Informatics},
volume = {54},
pages = {241--255},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.01.005},
doi = {10.1016/J.JBI.2015.01.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/0001CSW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/GordonW15,
author = {Claire L. Gordon and
Chunhua Weng},
title = {Combining expert knowledge and knowledge automatically acquired from
electronic data sources for continued ontology evaluation and improvement},
journal = {J. Biomed. Informatics},
volume = {57},
pages = {42--52},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.07.014},
doi = {10.1016/J.JBI.2015.07.014},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/GordonW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/0001RRW15,
author = {Zhe He and
Praveen Chandar Ravichandran and
Patrick B. Ryan and
Chunhua Weng},
title = {Simulation-based Evaluation of the Generalizability Index for Study
Traits},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t004-1.2745466/f004-1.2745467/2245297-1.2745726/2246216-1.2745723},
timestamp = {Wed, 17 Apr 2024 11:47:40 +0200},
biburl = {https://dblp.org/rec/conf/amia/0001RRW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BrownWVCB15,
author = {William Brown III and
Chunhua Weng and
David K. Vawdrey and
Alex Carballo{-}Dieguez and
Suzanne Bakken},
title = {Developing an Ontology from HIV-associated Elements in Research},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2245916-1.2745355/2248328-1.2745352},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/BrownWVCB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HrubyRHMHW15,
author = {Gregory William Hruby and
Praveen Chandar Ravichandran and
Julia Hoxha and
Eneida A. Mendon{\c{c}}a and
David A. Hanauer and
Chunhua Weng},
title = {What Are Frequent Data Requests from Researchers? {A} Conceptual Model
of Researchers' {EHR} Data Needs for Comparative Effectiveness Research},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2249395-1.2746137/2248929-1.2746134},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HrubyRHMHW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HuserMSTW15,
author = {Vojtech Huser and
Alexa T. McCray and
Neil R. Smalheiser and
Asba Tasneem and
Chunhua Weng},
title = {ClinicalTrials.gov: Adding Value through Informatics},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t002-1.2745869/f002-1.2745870/2247323-1.2745928/2237382-1.2745925},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HuserMSTW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HuserYWC15,
author = {Vojtech Huser and
Anil Yaman and
Chunhua Weng and
James J. Cimino},
title = {ArticlesAboutMe.org: Disseminating Clinical Trials Results to Patients},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2247296-1.2745115/2245459-1.2745112},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HuserYWC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JiangSPTWC15,
author = {Guoqian Jiang and
Harold R. Solbrig and
Eric Prud'hommeaux and
Cui Tao and
Chunhua Weng and
Christopher G. Chute},
title = {Quality Assurance of Cancer Study Common Data Elements Using {A} Post-Coordination
Approach},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t004-1.2745466/f004-1.2745467/2243651-1.2745705/2247514-1.2745702},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/JiangSPTWC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/KangEW15,
author = {Tian Kang and
No{\'{e}}mie Elhadad and
Chunhua Weng},
title = {Initial Readability Assessment of Clinical Trial Eligibility Criteria},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t004-1.2745466/f004-1.2745467/2229121-1.2745696/2246052-1.2745693},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/KangEW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/McKillopPW15,
author = {Mollie McKillop and
Fernanda Polubriaginof and
Chunhua Weng},
title = {Exploration of Temporal {ICD} Coding Bias Related to Acute Diabetic
Conditions},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t007-1.2744224/f007-1.2744225/2248522-1.2744265/2248288-1.2744262},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/McKillopPW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PaulsonW15,
author = {Matthew L. Paulson and
Chunhua Weng},
title = {Desiderata for Major Eligibility Criteria in Breast Cancer Clinical
Trials},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t007-1.2744224/f007-1.2744225/2246142-1.2744259/2247175-1.2744256},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PaulsonW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RavichandranYH015,
author = {Praveen Chandar Ravichandran and
Anil Yaman and
Julia Hoxha and
Zhe He and
Chunhua Weng},
title = {Similarity-Based Recommendation of New Concepts to a Terminology},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t004-1.2745466/f004-1.2745467/2239524-1.2745798/2244824-1.2745795},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RavichandranYH015.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RonquilloWL15,
author = {Jeremiah Geronimo Ronquillo and
Chunhua Weng and
William T. Lester},
title = {Understanding Challenges and Opportunities in Precision Medicine and
Interoperability Using Informatics Approaches},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2245814-1.2746008/2235420-1.2746005},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RonquilloWL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RustiaWF15,
author = {Evelyn Rustia and
Chunhua Weng and
Carol Friedman},
title = {Representation of Genetic Variants in Genomic Sequencing Reports},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248160-1.2744646/2247235-1.2744643},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RustiaWF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ShangWH15,
author = {Ning Shang and
Chunhua Weng and
George Hripcsak},
title = {A Framework for Assessing Clinical Data Suitability for Observational
Study},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2249384-1.2744592/2246843-1.2744589},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ShangWH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WeiskopfW15,
author = {Nicole Gray Weiskopf and
Chunhua Weng},
title = {A Guideline for Assessing {EHR} Data Quality for Secondary Use},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2219744-1.2745972/2242455-1.2745969},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WeiskopfW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/0001WBW15,
author = {Zhe He and
Shuang Wang and
Elhaam Borhanian and
Chunhua Weng},
editor = {Indra Neil Sarkar and
Andrew Georgiou and
Paulo Mazzoncini de Azevedo Marques},
title = {Assessing the Collective Population Representativeness of Related
Type 2 Diabetes Trials by Combining Public Data from ClinicalTrials.gov
and {NHANES}},
booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
19-23 August 2015},
series = {Studies in Health Technology and Informatics},
volume = {216},
pages = {569--573},
publisher = {{IOS} Press},
year = {2015},
url = {https://doi.org/10.3233/978-1-61499-564-7-569},
doi = {10.3233/978-1-61499-564-7-569},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/0001WBW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/HrubyAW15,
author = {Gregory William Hruby and
Jessica S. Ancker and
Chunhua Weng},
editor = {Indra Neil Sarkar and
Andrew Georgiou and
Paulo Mazzoncini de Azevedo Marques},
title = {Use of Self-Service Query Tools Varies by Experience and Research
Knowledge},
booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
19-23 August 2015},
series = {Studies in Health Technology and Informatics},
volume = {216},
pages = {1023},
publisher = {{IOS} Press},
year = {2015},
url = {https://doi.org/10.3233/978-1-61499-564-7-1023},
doi = {10.3233/978-1-61499-564-7-1023},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/HrubyAW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/JohnsonBDBAW14,
author = {Stephen B. Johnson and
Michael E. Bales and
Daniel Dine and
Suzanne Bakken and
Paul J. Albert and
Chunhua Weng},
title = {Automatic generation of investigator bibliographies for institutional
research networking systems},
journal = {J. Biomed. Informatics},
volume = {51},
pages = {8--14},
year = {2014},
url = {https://doi.org/10.1016/j.jbi.2014.03.013},
doi = {10.1016/J.JBI.2014.03.013},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/JohnsonBDBAW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HaoRBW14,
author = {Tianyong Hao and
Alexander Rusanov and
Mary Regina Boland and
Chunhua Weng},
title = {Clustering clinical trials with similar eligibility criteria features},
journal = {J. Biomed. Informatics},
volume = {52},
pages = {112--120},
year = {2014},
url = {https://doi.org/10.1016/j.jbi.2014.01.009},
doi = {10.1016/J.JBI.2014.01.009},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HaoRBW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BolandRSLBSBBW14,
author = {Mary Regina Boland and
Alexander Rusanov and
Yat So and
Carlos Lopez{-}Jimenez and
Linda Busacca and
Richard C. Steinman and
Suzanne Bakken and
J. Thomas Bigger and
Chunhua Weng},
title = {From expert-derived user needs to user-perceived ease of use and usefulness:
{A} two-phase mixed-methods evaluation framework},
journal = {J. Biomed. Informatics},
volume = {52},
pages = {141--150},
year = {2014},
url = {https://doi.org/10.1016/j.jbi.2013.12.004},
doi = {10.1016/J.JBI.2013.12.004},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/BolandRSLBSBBW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/BalesDMJBW14,
author = {Michael E. Bales and
Daniel C. Dine and
Jacqueline A. Merrill and
Stephen B. Johnson and
Suzanne Bakken and
Chunhua Weng},
title = {Associating co-authorship patterns with publications in high-impact
journals},
journal = {J. Biomed. Informatics},
volume = {52},
pages = {311--318},
year = {2014},
url = {https://doi.org/10.1016/j.jbi.2014.07.015},
doi = {10.1016/J.JBI.2014.07.015},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/BalesDMJBW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/RusanovWWW14,
author = {Alexander Rusanov and
Nicole Gray Weiskopf and
Shuang Wang and
Chunhua Weng},
title = {Hidden in plain sight: bias towards sick patients when sampling patients
with sufficient electronic health record data for research},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {14},
pages = {51},
year = {2014},
url = {https://doi.org/10.1186/1472-6947-14-51},
doi = {10.1186/1472-6947-14-51},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/RusanovWWW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/0001CHSW14,
author = {Zhe He and
Simona Carini and
Tianyong Hao and
Ida Sim and
Chunhua Weng},
title = {A Method for Analyzing Commonalities in Clinical Trial Target Populations},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-007-1.1543793/f-007-1.1543794/a-601-1.1543864/a-602-1.1543861},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/0001CHSW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BrownWVB14,
author = {William Brown III and
Chunhua Weng and
David K. Vawdrey and
Suzanne Bakken},
title = {Integrating Diverse HIV-associated Datasets via Semantic Harmonization},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-255-1.1544906/a-256-1.1544903},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/BrownWVB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/FortWW14,
author = {Daniel Fort and
Adam B. Wilcox and
Chunhua Weng},
title = {Could Patient Self-reported Health Data Complement {EHR} for Phenotyping?},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-007-1.1543793/f-007-1.1543794/a-597-1.1543876/a-598-1.1543873},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/FortWW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HanauerHFRMW14,
author = {David A. Hanauer and
Gregory William Hruby and
Daniel Fort and
Luke V. Rasmussen and
Eneida A. Mendon{\c{c}}a and
Chunhua Weng},
title = {What Is Asked in Clinical Data Request Forms? {A} Multi-site Thematic
Analysis of Forms Towards Better Data Access Support},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-158-1.1545199/a-159-1.1545196},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HanauerHFRMW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HirschW14,
author = {Jamie S. Hirsch and
Chunhua Weng},
title = {Design and Evaluation of a Glomerular Disease Ontology},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-352-1.1544615/a-353-1.1544612},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HirschW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MiottoW14,
author = {Riccardo Miotto and
Chunhua Weng},
title = {Patients Screening for Clinical Trials Using {EHR} Representation
Similarities},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-001-1.1545410/f-001-1.1545411/a-051-1.1545526/a-052-1.1545523},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MiottoW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NadkarniGLCBFLE14,
author = {Girish N. Nadkarni and
Omri Gottesman and
James G. Linneman and
Herbert S. Chase and
Richard L. Berg and
Samira Farouk and
Vaneet Lotay and
Stephen B. Ellis and
George Hripcsak and
Peggy L. Peissig and
Chunhua Weng and
Rajiv Nadukuru and
Erwin P. Bottinger},
title = {Development and validation of an electronic phenotyping algorithm
for chronic kidney disease},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-189-1.1545106/a-190-1.1545103},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/NadkarniGLCBFLE14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ParkMW14,
author = {Chin S. Park and
Jacqueline Merrill and
Chunhua Weng},
title = {Network Analysis of Common Eligibility Criteria in Cancer Clinical
Trials},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-473-1.1544252/a-474-1.1544249},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ParkMW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PradoW14,
author = {Patric V. Prado and
Chunhua Weng},
title = {Unsupervised Time-Series Clustering for Identifying Uncontrolled Type-2
Diabetic Patients},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-001-1.1545410/f-001-1.1545411/a-060-1.1545499/a-061-1.1545496},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PradoW14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icsh/WengYLH14,
author = {Chunhua Weng and
Anil Yaman and
Kuo Lin and
Zhe He},
editor = {Xiaolong Zheng and
Daniel Zeng and
Hsinchun Chen and
Yong Zhang and
Chunxiao Xing and
Daniel B. Neill},
title = {Trend and Network Analysis of Common Eligibility Features for Cancer
Trials in ClinicalTrials.gov},
booktitle = {Smart Health - International Conference, {ICSH} 2014, Beijing, China,
July 10-11, 2014. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8549},
pages = {130--141},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-08416-9\_13},
doi = {10.1007/978-3-319-08416-9\_13},
timestamp = {Mon, 15 May 2023 16:24:40 +0200},
biburl = {https://dblp.org/rec/conf/icsh/WengYLH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ni/WengPVJB14,
author = {Chunhua Weng and
Philip R. O. Payne and
Mark Velez and
Stephen B. Johnson and
Suzanne Bakken},
editor = {Kaija Saranto and
Charlotte A. Weaver and
Polun Chang},
title = {Towards Symbiosis in Knowledge Representation and Natural Language
Processing for Structuring Clinical Practice Guidelines},
booktitle = {Nursing Informatics 2014 - East Meets West eSMART+ - Proceedings of
the 12th International Congress on Nursing Informatics, Taipei, Taiwan,
June 21-25, 2014},
series = {Studies in Health Technology and Informatics},
volume = {201},
pages = {461--469},
publisher = {{IOS} Press},
year = {2014},
url = {https://doi.org/10.3233/978-1-61499-415-2-461},
doi = {10.3233/978-1-61499-415-2-461},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ni/WengPVJB14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/swat4ls/JiangSSTWC14,
author = {Guoqian Jiang and
Deepak K. Sharma and
Harold R. Solbrig and
Cui Tao and
Chunhua Weng and
Christopher G. Chute},
editor = {Adrian Paschke and
Albert Burger and
Paolo Romano and
M. Scott Marshall and
Andrea Splendiani},
title = {Building a Semantic Web-based Metadata Repository for Facilitating
Detailed Clinical Modeling in Cancer Genome Studies},
booktitle = {Proceedings of the 7th International Workshop on Semantic Web Applications
and Tools for Life Sciences, Berlin, Germany, December 9-11, 2014},
series = {{CEUR} Workshop Proceedings},
volume = {1320},
publisher = {CEUR-WS.org},
year = {2014},
url = {https://ceur-ws.org/Vol-1320/paper\_15.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:02 +0100},
biburl = {https://dblp.org/rec/conf/swat4ls/JiangSSTWC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WeiskopfW13,
author = {Nicole Gray Weiskopf and
Chunhua Weng},
title = {Methods and dimensions of electronic health record data quality assessment:
enabling reuse for clinical research},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {1},
pages = {144--151},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2011-000681},
doi = {10.1136/AMIAJNL-2011-000681},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WeiskopfW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/HrubyMBW13,
author = {Gregory William Hruby and
James McKiernan and
Suzanne Bakken and
Chunhua Weng},
title = {A centralized research data repository enhances retrospective outcomes
research capacity: a case report},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {3},
pages = {563--567},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001302},
doi = {10.1136/AMIAJNL-2012-001302},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/HrubyMBW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LuoMW13,
author = {Zhihui Luo and
Riccardo Miotto and
Chunhua Weng},
title = {A human-computer collaborative approach to identifying common data
elements in clinical trial eligibility criteria},
journal = {J. Biomed. Informatics},
volume = {46},
number = {1},
pages = {33--39},
year = {2013},
url = {https://doi.org/10.1016/j.jbi.2012.07.006},
doi = {10.1016/J.JBI.2012.07.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LuoMW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WengLBBGHSLBHBB13,
author = {Chunhua Weng and
Yu Li and
Solomon Berhe and
Mary Regina Boland and
Junfeng Gao and
Gregory William Hruby and
Richard C. Steinman and
Carlos Lopez{-}Jimenez and
Linda Busacca and
George Hripcsak and
Suzanne Bakken and
J. Thomas Bigger},
title = {An Integrated Model for Patient Care and Clinical Trials {(IMPACT)}
to support clinical research visit scheduling workflow for future
learning health systems},
journal = {J. Biomed. Informatics},
volume = {46},
number = {4},
pages = {642--652},
year = {2013},
url = {https://doi.org/10.1016/j.jbi.2013.05.001},
doi = {10.1016/J.JBI.2013.05.001},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WengLBBGHSLBHBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WeiskopfHSW13,
author = {Nicole Gray Weiskopf and
George Hripcsak and
Sushmita Swaminathan and
Chunhua Weng},
title = {Defining and measuring completeness of electronic health records for
secondary use},
journal = {J. Biomed. Informatics},
volume = {46},
number = {5},
pages = {830--836},
year = {2013},
url = {https://doi.org/10.1016/j.jbi.2013.06.010},
doi = {10.1016/J.JBI.2013.06.010},
timestamp = {Mon, 26 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/WeiskopfHSW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MiottoJW13,
author = {Riccardo Miotto and
Silis Y. Jiang and
Chunhua Weng},
title = {eTACTS: {A} method for dynamically filtering clinical trial search
results},
journal = {J. Biomed. Informatics},
volume = {46},
number = {6},
pages = {1060--1067},
year = {2013},
url = {https://doi.org/10.1016/j.jbi.2013.07.014},
doi = {10.1016/J.JBI.2013.07.014},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/MiottoJW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MiottoW13,
author = {Riccardo Miotto and
Chunhua Weng},
title = {Unsupervised mining of frequent tags for clinical eligibility text
indexing},
journal = {J. Biomed. Informatics},
volume = {46},
number = {6},
pages = {1145--1151},
year = {2013},
url = {https://doi.org/10.1016/j.jbi.2013.08.012},
doi = {10.1016/J.JBI.2013.08.012},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/MiottoW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/GordonPCBPGW13,
author = {Claire L. Gordon and
Stephanie Pouch and
Lindsay G. Cowell and
Mary Regina Boland and
Heather L. Platt and
Albert Goldfain and
Chunhua Weng},
title = {Design and Evaluation of a Bacterial Clinical Infectious Diseases
Ontology},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-09-1.582024/f-009-1.582025/a-133-1.582125/a-182-1.582120},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/GordonPCBPGW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MiottoW13,
author = {Riccardo Miotto and
Chunhua Weng},
title = {eTACTS: an Eligibility Tag Cloud-based Clinical Trial Search Engine},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-10-1.581994/f-010-1.581995/a-266-1.582006/a-356-1.582001},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MiottoW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WeiskopfRW13,
author = {Nicole Gray Weiskopf and
Alex Rusanov and
Chunhua Weng},
title = {Sick Patients Have More Data: The Non-Random Completeness of Electronic
Health Records},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-09-1.582024/f-009-1.582025/a-543-1.582051/a-556-1.582046},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WeiskopfRW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WengCTAK13,
author = {Chunhua Weng and
Michael N. Cantor and
Adel Taweel and
Theodoros N. Arvanitis and
Rebecca Daniels Kush},
title = {Towards Computational Reuse of Clinical Research Eligibility Criteria
with Collaboration across Academia, Industry, and Standardization
Organizations},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-04-1.584348/f-004-1.584349/a-554-1.584366/a-559-1.584360},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WengCTAK13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WengLHZGLB13,
author = {Chunhua Weng and
Yu Li and
George Hripcsak and
Yuan Zhang and
Jie Gao and
Feng Liu and
J. Thomas Bigger},
title = {Using Electronic Health Records To Assess Generalizability of Clinical
Trials},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-03-1.584514/f-003-1.584515/a-526-1.584534/a-560-1.584527},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WengLHZGLB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icsh/HaoRW13,
author = {Tianyong Hao and
Alex Rusanov and
Chunhua Weng},
editor = {Daniel Zeng and
Christopher C. Yang and
Vincent S. Tseng and
Chunxiao Xing and
Hsinchun Chen and
Fei{-}Yue Wang and
Xiaolong Zheng},
title = {Extracting and Normalizing Temporal Expressions in Clinical Data Requests
from Researchers},
booktitle = {Smart Health - International Conference, {ICSH} 2013, Beijing, China,
August 3-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8040},
pages = {41--51},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-39844-5\_7},
doi = {10.1007/978-3-642-39844-5\_7},
timestamp = {Mon, 15 May 2023 16:24:40 +0200},
biburl = {https://dblp.org/rec/conf/icsh/HaoRW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/BolandMW13,
author = {Mary Regina Boland and
Riccardo Miotto and
Chunhua Weng},
editor = {Christoph Ulrich Lehmann and
Elske Ammenwerth and
Christian N{\o}hr},
title = {A Method for Probing Disease Relatedness Using Common Clinical Eligibility
Criteria},
booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
series = {Studies in Health Technology and Informatics},
volume = {192},
pages = {481--485},
publisher = {{IOS} Press},
year = {2013},
url = {https://doi.org/10.3233/978-1-61499-289-9-481},
doi = {10.3233/978-1-61499-289-9-481},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/BolandMW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/NakikjW13,
author = {Drashko Nakikj and
Chunhua Weng},
editor = {Christoph Ulrich Lehmann and
Elske Ammenwerth and
Christian N{\o}hr},
title = {Extending {VIVO} Ontology to Represent Research and Educational Resources
in an Academic Biomedical Informatics Department},
booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
series = {Studies in Health Technology and Informatics},
volume = {192},
pages = {1206},
publisher = {{IOS} Press},
year = {2013},
url = {https://doi.org/10.3233/978-1-61499-289-9-1206},
doi = {10.3233/978-1-61499-289-9-1206},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/NakikjW13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WengAHKBDB12,
author = {Chunhua Weng and
Paul Appelbaum and
George Hripcsak and
Ian Kronish and
Linda Busacca and
Karina W. Davidson and
J. Thomas Bigger},
title = {Using EHRs to integrate research with patient care: promises and challenges},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {5},
pages = {684--687},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2012-000878},
doi = {10.1136/AMIAJNL-2012-000878},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WengAHKBDB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KahnW12,
author = {Michael G. Kahn and
Chunhua Weng},
title = {Clinical research informatics: a conceptual perspective},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {e1},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2012-000968},
doi = {10.1136/AMIAJNL-2012-000968},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KahnW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BakkenBBFGSWW12,
author = {Suzanne Bakken and
J. Thomas Bigger and
Bernadette Boden{-}Albala and
Penny Feldman and
Kathleen Gallagher and
Peter D. Stetson and
Chunhua Weng and
Adam B. Wilcox},
title = {Establishing Data Governance for Comparative Effectiveness Research:
Experience of the Washington Heights Inwood Informatics Infrastructure
for Comparative Effectiveness Research {(WICER)}},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-293-1.640327/a-294-1.640324},
timestamp = {Wed, 17 Apr 2024 11:48:03 +0200},
biburl = {https://dblp.org/rec/conf/amia/BakkenBBFGSWW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HrubyWW12,
author = {Gregory William Hruby and
Adam B. Wilcox and
Chunhua Weng},
title = {Analysis of Query Negotiation between a Researcher and a Query Expert},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-392-1.640024/a-393-1.640021},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HrubyWW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/XuW12,
author = {Nanfang Xu and
Chunhua Weng},
title = {An ontology-based Clinical Phenotyping Framework For eMERGE Network
Algorithms},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-620-1.639329/a-621-1.639326},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/XuW12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WengWLBTJ11,
author = {Chunhua Weng and
Xiaoying Wu and
Zhihui Luo and
Mary Regina Boland and
Dimitri Theodoratos and
Stephen B. Johnson},
title = {EliXR: an approach to eligibility criteria extraction and representation},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {Supplement},
pages = {116--124},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000321},
doi = {10.1136/AMIAJNL-2011-000321},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/WengWLBTJ11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhaoW11,
author = {Di Zhao and
Chunhua Weng},
title = {Combining PubMed knowledge and {EHR} data to develop a weighted bayesian
network for pancreatic cancer prediction},
journal = {J. Biomed. Informatics},
volume = {44},
number = {5},
pages = {859--868},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2011.05.004},
doi = {10.1016/J.JBI.2011.05.004},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/ZhaoW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LuoYW11,
author = {Zhihui Luo and
Meliha Yetisgen{-}Yildiz and
Chunhua Weng},
title = {Dynamic categorization of clinical research eligibility criteria by
hierarchical clustering},
journal = {J. Biomed. Informatics},
volume = {44},
number = {6},
pages = {927--935},
year = {2011},
url = {https://doi.org/10.1016/j.jbi.2011.06.001},
doi = {10.1016/J.JBI.2011.06.001},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LuoYW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WengTSR10,
author = {Chunhua Weng and
Samson W. Tu and
Ida Sim and
Rachel L. Richesson},
title = {Formal representation of eligibility criteria: {A} literature review},
journal = {J. Biomed. Informatics},
volume = {43},
number = {3},
pages = {451--467},
year = {2010},
url = {https://doi.org/10.1016/j.jbi.2009.12.004},
doi = {10.1016/J.JBI.2009.12.004},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WengTSR10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ThadaniWBEW09,
author = {Samir R. Thadani and
Chunhua Weng and
J. Thomas Bigger and
John F. Ennever and
David Wajngurt},
title = {Case Report: Electronic Screening Improves Efficiency in Clinical
Trial Recruitment},
journal = {J. Am. Medical Informatics Assoc.},
volume = {16},
number = {6},
pages = {869--873},
year = {2009},
url = {https://doi.org/10.1197/jamia.M3119},
doi = {10.1197/JAMIA.M3119},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ThadaniWBEW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhuFBWC09,
author = {Xinxin Zhu and
Jung{-}Wei Fan and
David M. Baorto and
Chunhua Weng and
James J. Cimino},
title = {A review of auditing methods applied to the content of controlled
biomedical terminologies},
journal = {J. Biomed. Informatics},
volume = {42},
number = {3},
pages = {413--425},
year = {2009},
url = {https://doi.org/10.1016/j.jbi.2009.03.003},
doi = {10.1016/J.JBI.2009.03.003},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/ZhuFBWC09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/PatelW09,
author = {Chintan Patel and
Chunhua Weng},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Clinical Data and Information Models},
booktitle = {Encyclopedia of Database Systems},
pages = {348--349},
publisher = {Springer {US}},
year = {2009},
url = {https://doi.org/10.1007/978-0-387-39940-9\_55},
doi = {10.1007/978-0-387-39940-9\_55},
timestamp = {Sun, 02 Jun 2019 21:10:27 +0200},
biburl = {https://dblp.org/rec/reference/db/PatelW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/PatelW09a,
author = {Chintan Patel and
Chunhua Weng},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Clinical Data Quality and Validation},
booktitle = {Encyclopedia of Database Systems},
pages = {349--350},
publisher = {Springer {US}},
year = {2009},
url = {https://doi.org/10.1007/978-0-387-39940-9\_56},
doi = {10.1007/978-0-387-39940-9\_56},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/db/PatelW09a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/PatelW09b,
author = {Chintan Patel and
Chunhua Weng},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Quality and Trust of Information Content and Credentialing},
booktitle = {Encyclopedia of Database Systems},
pages = {2229--2230},
publisher = {Springer {US}},
year = {2009},
url = {https://doi.org/10.1007/978-0-387-39940-9\_288},
doi = {10.1007/978-0-387-39940-9\_288},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/db/PatelW09b.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@incollection{DBLP:reference/db/PatelW09c,
author = {Chintan Patel and
Chunhua Weng},
editor = {Ling Liu and
M. Tamer {\"{O}}zsu},
title = {Reference Knowledge},
booktitle = {Encyclopedia of Database Systems},
pages = {2360},
publisher = {Springer {US}},
year = {2009},
url = {https://doi.org/10.1007/978-0-387-39940-9\_303},
doi = {10.1007/978-0-387-39940-9\_303},
timestamp = {Wed, 12 Jul 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/reference/db/PatelW09c.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiCPFW08,
author = {Li Li and
Herbert S. Chase and
Chintan Patel and
Carol Friedman and
Chunhua Weng},
title = {Comparing ICD9-Encoded Diagnoses and NLP-Processed Discharge Summaries
for Clinical Trials Pre-Screening: {A} Case Study},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-083-1.626315/a-084-1.626312},
timestamp = {Wed, 17 Apr 2024 11:48:12 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiCPFW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WengGBBG08,
author = {Chunhua Weng and
Dympna Gallagher and
Michael E. Bales and
Suzanne Bakken and
Henry N. Ginsberg},
title = {Understanding Interdisciplinary Health Sciences Collaborations: {A}
Campus-Wide Survey of Obesity Experts},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-165-1.626067/a-166-1.626064},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WengGBBG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/WengMSMG07,
author = {Chunhua Weng and
David W. McDonald and
Dana Sparks and
Jason McCoy and
John H. Gennari},
title = {Participatory design of a collaborative clinical trial protocol writing
system},
journal = {Int. J. Medical Informatics},
volume = {76},
number = {{S1}},
pages = {S245--S251},
year = {2007},
url = {https://doi.org/10.1016/j.ijmedinf.2006.05.035},
doi = {10.1016/J.IJMEDINF.2006.05.035},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/WengMSMG07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WengGF07,
author = {Chunhua Weng and
John H. Gennari and
Douglas B. Fridsma},
title = {User-centered semantic harmonization: {A} case study},
journal = {J. Biomed. Informatics},
volume = {40},
number = {3},
pages = {353--364},
year = {2007},
url = {https://doi.org/10.1016/j.jbi.2007.03.004},
doi = {10.1016/J.JBI.2007.03.004},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WengGF07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WengF06,
author = {Chunhua Weng and
Douglas B. Fridsma},
title = {A Call for Collaborative Semantic Harmonization},
booktitle = {{AMIA} 2006, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 11-15, 2006},
publisher = {{AMIA}},
year = {2006},
url = {https://knowledge.amia.org/amia-55142-a2006a-1.620145/t-002-1.622268/f-001-1.622269/a-470-1.622329/a-471-1.622326},
timestamp = {Wed, 17 Apr 2024 11:48:16 +0200},
biburl = {https://dblp.org/rec/conf/amia/WengF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/GennariWBM05,
author = {John H. Gennari and
Chunhua Weng and
Jacqueline Benedetti and
David W. McDonald},
title = {Asynchronous communication among clinical researchers: {A} study for
systems design},
journal = {Int. J. Medical Informatics},
volume = {74},
number = {10},
pages = {797--807},
year = {2005},
url = {https://doi.org/10.1016/j.ijmedinf.2005.03.019},
doi = {10.1016/J.IJMEDINF.2005.03.019},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/GennariWBM05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Weng05,
author = {Chunhua Weng},
title = {Why It Is Hard to Support Group Work in Distributed Healthcare Organizations:
Empirical Knowledge of the Social-Technical Gap},
booktitle = {{AMIA} 2005, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, October 22-26, 2005},
publisher = {{AMIA}},
year = {2005},
url = {https://knowledge.amia.org/amia-55142-a2005a-1.613296/t-001-1.616182/f-001-1.616183/a-161-1.616206/a-162-1.616203},
timestamp = {Wed, 17 Apr 2024 11:48:22 +0200},
biburl = {https://dblp.org/rec/conf/amia/Weng05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cscw/McDonaldWG04,
author = {David W. McDonald and
Chunhua Weng and
John H. Gennari},
editor = {James D. Herbsleb and
Gary M. Olson},
title = {The multiple views of inter-organizational authoring},
booktitle = {Proceedings of the 2004 {ACM} Conference on Computer Supported Cooperative
Work, {CSCW} 2004, Chicago, Illinois, USA, November 6-10, 2004},
pages = {564--573},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/1031607.1031703},
doi = {10.1145/1031607.1031703},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cscw/McDonaldWG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cscw/WengG04,
author = {Chunhua Weng and
John H. Gennari},
editor = {James D. Herbsleb and
Gary M. Olson},
title = {Asynchronous collaborative writing through annotations},
booktitle = {Proceedings of the 2004 {ACM} Conference on Computer Supported Cooperative
Work, {CSCW} 2004, Chicago, Illinois, USA, November 6-10, 2004},
pages = {578--581},
publisher = {{ACM}},
year = {2004},
url = {https://doi.org/10.1145/1031607.1031705},
doi = {10.1145/1031607.1031705},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cscw/WengG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/GennariWMBG04,
author = {John H. Gennari and
Chunhua Weng and
David W. McDonald and
Jacqueline Benedetti and
Stephanie Green},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {An Ethnographic Study of Collaborative Clinical Trial Protocol Writing},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {1461--1465},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-1461},
doi = {10.3233/978-1-60750-949-3-1461},
timestamp = {Wed, 17 Aug 2022 16:35:51 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/GennariWMBG04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/WengGM04,
author = {Chunhua Weng and
John H. Gennari and
David W. McDonald},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {A Collaborative Clinical Trial Protocol Writing System},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {1481--1485},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-1481},
doi = {10.3233/978-1-60750-949-3-1481},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/WengGM04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WengGM03,
author = {Chunhua Weng and
John H. Gennari and
David W. McDonald},
title = {Scenario-based Participatory Design of {A} Collaborative Clinical
Trial Protocol Authoring System},
booktitle = {{AMIA} 2003, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2003},
publisher = {{AMIA}},
year = {2003},
url = {https://knowledge.amia.org/amia-55142-a2003a-1.616734/t-002-1.618748/f-001-1.618749/a-432-1.618787/a-433-1.618784},
timestamp = {Wed, 17 Apr 2024 11:48:28 +0200},
biburl = {https://dblp.org/rec/conf/amia/WengGM03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WengKG02,
author = {Chunhua Weng and
Michael G. Kahn and
John H. Gennari},
title = {Temporal knowledge representation for scheduling tasks in clinical
trial protocols},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-177-1.612717/a-178-1.612714},
timestamp = {Wed, 17 Apr 2024 11:48:33 +0200},
biburl = {https://dblp.org/rec/conf/amia/WengKG02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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