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ORCIDBibTeX records: Jasmine Young
@article{DBLP:journals/biodb/ChoudharyFBCIPPSTVWYPMHKVB24,
author = {Preeti Choudhary and
Zukang Feng and
John M. Berrisford and
Henry Chao and
Yasuyo Ikegawa and
Ezra Peisach and
Dennis W. Piehl and
James Smith and
Ahsan Tanweer and
Mihaly Varadi and
John D. Westbrook and
Jasmine Young and
Ardan Patwardhan and
Kyle L. Morris and
Jeffrey C. Hoch and
Genji Kurisu and
Sameer Velankar and
Stephen K. Burley},
title = {{PDB} NextGen Archive: centralizing access to integrated annotations
and enriched structural information by the Worldwide Protein Data
Bank},
journal = {Database J. Biol. Databases Curation},
volume = {2024},
year = {2024},
url = {https://doi.org/10.1093/database/baae041},
doi = {10.1093/DATABASE/BAAE041},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ChoudharyFBCIPPSTVWYPMHKVB24.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BurleyBBBCCCCDDDFFFGGGGGHHKLLLPPPRS23,
author = {Stephen K. Burley and
Charmi Bhikadiya and
Chunxiao Bi and
Sebastian Bittrich and
Henry Chao and
Li Chen and
Paul A. Craig and
Gregg V. Crichlow and
Kenneth Dalenberg and
Jose M. Duarte and
Shuchismita Dutta and
Maryam Fayazi and
Zukang Feng and
Justin W. Flatt and
Sai Ganesan and
Sutapa Ghosh and
David S. Goodsell and
Rachel Kramer Green and
Vladimir Guranovic and
Jeremy Henry and
Brian P. Hudson and
Igor Khokhriakov and
Catherine L. Lawson and
Yuhe Liang and
Robert Lowe and
Ezra Peisach and
Irina Persikova and
Dennis W. Piehl and
Yana Rose and
Andrej Sali and
Joan Segura and
Monica Sekharan and
Chenghua Shao and
Brinda Vallat and
Maria Voigt and
Ben M. Webb and
John D. Westbrook and
Shamara Whetstone and
Jasmine Young and
Arthur O. Zalevsky and
Christine Zardecki},
title = {{RCSB} Protein Data Bank (RCSB.org): delivery of experimentally-determined
{PDB} structures alongside one million computed structure models of
proteins from artificial intelligence/machine learning},
journal = {Nucleic Acids Res.},
volume = {51},
number = {{D1}},
pages = {488--508},
year = {2023},
url = {https://doi.org/10.1093/nar/gkac1077},
doi = {10.1093/NAR/GKAC1077},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BurleyBBBCCCCDDDFFFGGGGGHHKLLLPPPRS23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BurleyBBB0CCDCD21,
author = {Stephen K. Burley and
Charmi Bhikadiya and
Chunxiao Bi and
Sebastian Bittrich and
Li Chen and
Gregg V. Crichlow and
Cole H. Christie and
Kenneth Dalenberg and
Luigi Di Costanzo and
Jose M. Duarte and
Shuchismita Dutta and
Zukang Feng and
Sai Ganesan and
David S. Goodsell and
Sutapa Ghosh and
Rachel Kramer Green and
Vladimir Guranovic and
Dmytro Guzenko and
Brian P. Hudson and
Catherine L. Lawson and
Yuhe Liang and
Robert Lowe and
Harry Namkoong and
Ezra Peisach and
Irina Persikova and
Christopher Randle and
Alexander S. Rose and
Yana Rose and
Andrej Sali and
Joan Segura and
Monica Sekharan and
Chenghua Shao and
Yi{-}Ping Tao and
Maria Voigt and
John D. Westbrook and
Jasmine Young and
Christine Zardecki and
Marina Zhuravleva},
title = {{RCSB} Protein Data Bank: powerful new tools for exploring 3D structures
of biological macromolecules for basic and applied research and education
in fundamental biology, biomedicine, biotechnology, bioengineering
and energy sciences},
journal = {Nucleic Acids Res.},
volume = {49},
number = {Database-Issue},
pages = {D437--D451},
year = {2021},
url = {https://doi.org/10.1093/nar/gkaa1038},
doi = {10.1093/NAR/GKAA1038},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BurleyBBB0CCDCD21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/BurleyBBBCCCDDD19,
author = {Stephen K. Burley and
Helen M. Berman and
Charmi Bhikadiya and
Chunxiao Bi and
Li Chen and
Luigi Di Costanzo and
Cole H. Christie and
Kenneth Dalenberg and
Jose M. Duarte and
Shuchismita Dutta and
Zukang Feng and
Sutapa Ghosh and
David S. Goodsell and
Rachel Kramer Green and
Vladimir Guranovic and
Dmytro Guzenko and
Brian P. Hudson and
Tara Kalro and
Yuhe Liang and
Robert Lowe and
Harry Namkoong and
Ezra Peisach and
Irina Periskova and
Andreas Prlic and
Christopher Randle and
Alexander S. Rose and
Peter W. Rose and
Raul Sala and
Monica Sekharan and
Chenghua Shao and
Lihua Tan and
Yi{-}Ping Tao and
Yana Valasatava and
Maria Voigt and
John D. Westbrook and
Jesse Woo and
Huanwang Yang and
Jasmine Young and
Marina Zhuravleva and
Christine Zardecki},
title = {{RCSB} Protein Data Bank: biological macromolecular structures enabling
research and education in fundamental biology, biomedicine, biotechnology
and energy},
journal = {Nucleic Acids Res.},
volume = {47},
number = {Database-Issue},
pages = {D464--D474},
year = {2019},
url = {https://doi.org/10.1093/nar/gky1004},
doi = {10.1093/NAR/GKY1004},
timestamp = {Sat, 06 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/BurleyBBBCCCDDD19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/YoungWFPPSSBSOG18,
author = {Jasmine Young and
John D. Westbrook and
Zukang Feng and
Ezra Peisach and
Irina Persikova and
Raul Sala and
Sanchayita Sen and
John M. Berrisford and
Jawahar Swaminathan and
Thomas J. Oldfield and
Aleksandras Gutmanas and
Reiko Igarashi and
David R. Armstrong and
Kumaran Baskaran and
Li Chen and
Minyu Chen and
Alice R. Clark and
Luigi Di Costanzo and
Dimitris Dimitropoulos and
Guanghua Gao and
Sutapa Ghosh and
Swanand P. Gore and
Vladimir Guranovic and
Pieter M. S. Hendrickx and
Brian P. Hudson and
Yasuyo Ikegawa and
Yumiko Kengaku and
Catherine L. Lawson and
Yuhe Liang and
Lora Mak and
Abhik Mukhopadhyay and
Buvaneswari Coimbatore Narayanan and
Kayoko Nishiyama and
Ardan Patwardhan and
Gaurav Sahni and
Eduardo Sanz{-}Garc{\'{\i}}a and
Junko Sato and
Monica Sekharan and
Chenghua Shao and
Oliver S. Smart and
Lihua Tan and
Glen van Ginkel and
Huanwang Yang and
Marina Zhuravleva and
John L. Markley and
Haruki Nakamura and
Genji Kurisu and
Gerard J. Kleywegt and
Sameer Velankar and
Helen M. Berman and
Stephen K. Burley},
title = {Worldwide Protein Data Bank biocuration supporting open access to
high-quality 3D structural biology data},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay002},
year = {2018},
url = {https://doi.org/10.1093/database/bay002},
doi = {10.1093/DATABASE/BAY002},
timestamp = {Sun, 04 Aug 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/YoungWFPPSSBSOG18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RosePABBCCDDFGG17,
author = {Peter W. Rose and
Andreas Prlic and
Ali Altunkaya and
Chunxiao Bi and
Anthony R. Bradley and
Cole H. Christie and
Luigi Di Costanzo and
Jose M. Duarte and
Shuchismita Dutta and
Zukang Feng and
Rachel Kramer Green and
David S. Goodsell and
Brian P. Hudson and
Tara Kalro and
Robert Lowe and
Ezra Peisach and
Christopher Randle and
Alexander S. Rose and
Chenghua Shao and
Yi{-}Ping Tao and
Yana Valasatava and
Maria Voigt and
John D. Westbrook and
Jesse Woo and
Huanwang Yang and
Jasmine Young and
Christine Zardecki and
Helen M. Berman and
Stephen K. Burley},
title = {The {RCSB} protein data bank: integrative view of protein, gene and
3D structural information},
journal = {Nucleic Acids Res.},
volume = {45},
number = {Database-Issue},
pages = {D271--D281},
year = {2017},
url = {https://doi.org/10.1093/nar/gkw1000},
doi = {10.1093/NAR/GKW1000},
timestamp = {Sat, 06 Jul 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RosePABBCCDDFGG17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/WestbrookSFZVY15,
author = {John D. Westbrook and
Chenghua Shao and
Zukang Feng and
Marina Zhuravleva and
Sameer Velankar and
Jasmine Young},
title = {The chemical component dictionary: complete descriptions of constituent
molecules in experimentally determined 3D macromolecules in the Protein
Data Bank},
journal = {Bioinform.},
volume = {31},
number = {8},
pages = {1274--1278},
year = {2015},
url = {https://doi.org/10.1093/bioinformatics/btu789},
doi = {10.1093/BIOINFORMATICS/BTU789},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/WestbrookSFZVY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RosePBBCDGGWWYZBBB15,
author = {Peter W. Rose and
Andreas Prlic and
Chunxiao Bi and
Wolfgang Bluhm and
Cole H. Christie and
Shuchismita Dutta and
Rachel Kramer Green and
David S. Goodsell and
John D. Westbrook and
Jesse Woo and
Jasmine Young and
Christine Zardecki and
Helen M. Berman and
Philip E. Bourne and
Stephen K. Burley},
title = {The {RCSB} Protein Data Bank: views of structural biology for basic
and applied research and education},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {345--356},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1214},
doi = {10.1093/NAR/GKU1214},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RosePBBCDGGWWYZBBB15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/SenYBCCDCGGHIKLPPMNSSSSTZ14,
author = {Sanchayita Sen and
Jasmine Young and
John M. Berrisford and
Minyu Chen and
Matthew J. Conroy and
Shuchismita Dutta and
Luigi Di Costanzo and
Guanghua Gao and
Sutapa Ghosh and
Brian P. Hudson and
Reiko Igarashi and
Yumiko Kengaku and
Yuhe Liang and
Ezra Peisach and
Irina Persikova and
Abhik Mukhopadhyay and
Buvaneswari Coimbatore Narayanan and
Gaurav Sahni and
Junko Sato and
Monica Sekharan and
Chenghua Shao and
Lihua Tan and
Marina Zhuravleva},
title = {Small molecule annotation for the Protein Data Bank},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau116},
doi = {10.1093/DATABASE/BAU116},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/SenYBCCDCGGHIKLPPMNSSSSTZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/YoungFDSWZSQPB13,
author = {Jasmine Young and
Zukang Feng and
Dimitris Dimitropoulos and
Raul Sala and
John D. Westbrook and
Marina Zhuravleva and
Chenghua Shao and
Martha Quesada and
Ezra Peisach and
Helen M. Berman},
title = {Chemical annotation of small and peptide-like molecules at the Protein
Data Bank},
journal = {Database J. Biol. Databases Curation},
volume = {2013},
year = {2013},
url = {https://doi.org/10.1093/database/bat079},
doi = {10.1093/DATABASE/BAT079},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/YoungFDSWZSQPB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RoseBBCDDGGPQQRWYZBB13,
author = {Peter W. Rose and
Chunxiao Bi and
Wolfgang Bluhm and
Cole H. Christie and
Dimitris Dimitropoulos and
Shuchismita Dutta and
Rachel Kramer Green and
David S. Goodsell and
Andreas Prlic and
Martha Quesada and
Greg B. Quinn and
Alexander G. Ramos and
John D. Westbrook and
Jasmine Young and
Christine Zardecki and
Helen M. Berman and
Philip E. Bourne},
title = {The {RCSB} Protein Data Bank: new resources for research and education},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {475--482},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1200},
doi = {10.1093/NAR/GKS1200},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RoseBBCDDGGPQQRWYZBB13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/GaudetABBBCDFGHKKMKMNOOPRSSSAVWYM12,
author = {Pascale Gaudet and
Cecilia N. Arighi and
Frederic B. Bastian and
Alex Bateman and
Judith A. Blake and
J. Michael Cherry and
Peter D'Eustachio and
Robert D. Finn and
Michelle G. Giglio and
Lynette Hirschman and
Renate Kania and
William Klimke and
Maria Jesus Martin and
Ilene Karsch{-}Mizrachi and
Monica C. Munoz{-}Torres and
Darren A. Natale and
Claire O'Donovan and
B. F. Francis Ouellette and
Kim D. Pruitt and
Marc Robinson{-}Rechavi and
Susanna{-}Assunta Sansone and
Paul N. Schofield and
Granger G. Sutton and
Kimberly Van Auken and
Sona Vasudevan and
Cathy H. Wu and
Jasmine Young and
Raja Mazumder},
title = {Recent advances in biocuration: Meeting Report from the fifth International
Biocuration Conference},
journal = {Database J. Biol. Databases Curation},
volume = {2012},
year = {2012},
url = {https://doi.org/10.1093/database/bas036},
doi = {10.1093/DATABASE/BAS036},
timestamp = {Tue, 07 May 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/GaudetABBBCDFGHKKMKMNOOPRSSSAVWYM12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/BluhmBBDPQRSYYBB11,
author = {Wolfgang Bluhm and
Bojan Beran and
Chunxiao Bi and
Dimitris Dimitropoulos and
Andreas Prlic and
Greg B. Quinn and
Peter W. Rose and
Chaitali Shah and
Jasmine Young and
Benjamin T. Yukich and
Helen M. Berman and
Philip E. Bourne},
title = {Quality assurance for the query and distribution systems of the {RCSB}
Protein Data Bank},
journal = {Database J. Biol. Databases Curation},
volume = {2011},
year = {2011},
url = {https://doi.org/10.1093/database/bar003},
doi = {10.1093/DATABASE/BAR003},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/BluhmBBDPQRSYYBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/RoseBBBDGPQQWYYZBB11,
author = {Peter W. Rose and
Bojan Beran and
Chunxiao Bi and
Wolfgang Bluhm and
Dimitris Dimitropoulos and
David S. Goodsell and
Andreas Prlic and
Martha Quesada and
Greg B. Quinn and
John D. Westbrook and
Jasmine Young and
Benjamin T. Yukich and
Christine Zardecki and
Helen M. Berman and
Philip E. Bourne},
title = {The {RCSB} Protein Data Bank: redesigned web site and web services},
journal = {Nucleic Acids Res.},
volume = {39},
number = {Database-Issue},
pages = {392--401},
year = {2011},
url = {https://doi.org/10.1093/nar/gkq1021},
doi = {10.1093/NAR/GKQ1021},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/RoseBBBDGPQQWYYZBB11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/HenrickFBDDDFIKKLMNNSSVOUVWYYYYB08,
author = {Kim Henrick and
Zukang Feng and
Wolfgang Bluhm and
Dimitris Dimitropoulos and
Jurgen F. Doreleijers and
Shuchismita Dutta and
Judith L. Flippen{-}Anderson and
John M. C. Ionides and
Chisa Kamada and
Eugene Krissinel and
Catherine L. Lawson and
John L. Markley and
Haruki Nakamura and
Richard H. Newman and
Yukiko Shimizu and
Jawahar Swaminathan and
Sameer Velankar and
Jeramia Ory and
Eldon L. Ulrich and
Wim F. Vranken and
John D. Westbrook and
Reiko Yamashita and
Huanwang Yang and
Jasmine Young and
Muhammed Yousufuddin and
Helen M. Berman},
title = {Remediation of the protein data bank archive},
journal = {Nucleic Acids Res.},
volume = {36},
number = {Database-Issue},
pages = {426--433},
year = {2008},
url = {https://doi.org/10.1093/nar/gkm937},
doi = {10.1093/NAR/GKM937},
timestamp = {Sun, 17 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/HenrickFBDDDFIKKLMNNSSVOUVWYYYYB08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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