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ORCIDBibTeX records: Jun Yu 0004
@article{DBLP:journals/gpb/ZhouLHZSYZ23,
author = {Jingqi Zhou and
Ake Liu and
Funan He and
Yunbin Zhang and
Libing Shen and
Jun Yu and
Xiang Zhang},
title = {Draft Genome of White-blotched River Stingray Provides Novel Clues
for Niche Adaptation and Skeleton Formation},
journal = {Genom. Proteom. Bioinform.},
volume = {21},
number = {3},
pages = {501--514},
year = {2023},
url = {https://doi.org/10.1016/j.gpb.2022.11.005},
doi = {10.1016/J.GPB.2022.11.005},
timestamp = {Fri, 26 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ZhouLHZSYZ23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icic/XiaoYGYMDZ22,
author = {Ming Xiao and
Ruiying Yin and
Pengbo Gao and
Jun Yu and
Fubo Ma and
Zichun Dai and
Le Zhang},
editor = {De{-}Shuang Huang and
Kang{-}Hyun Jo and
Junfeng Jing and
Prashan Premaratne and
Vitoantonio Bevilacqua and
Abir Hussain},
title = {Position-Defined CpG Islands Provide Complete Co-methylation Indexing
for Human Genes},
booktitle = {Intelligent Computing Theories and Application - 18th International
Conference, {ICIC} 2022, Xi'an, China, August 7-11, 2022, Proceedings,
Part {II}},
series = {Lecture Notes in Computer Science},
volume = {13394},
pages = {319--333},
publisher = {Springer},
year = {2022},
url = {https://doi.org/10.1007/978-3-031-13829-4\_27},
doi = {10.1007/978-3-031-13829-4\_27},
timestamp = {Tue, 16 Aug 2022 16:15:39 +0200},
biburl = {https://dblp.org/rec/conf/icic/XiaoYGYMDZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZhangDYX21,
author = {Le Zhang and
Zichun Dai and
Jun Yu and
Ming Xiao},
title = {CpG-island-based annotation and analysis of human housekeeping genes},
journal = {Briefings Bioinform.},
volume = {22},
number = {1},
pages = {515--525},
year = {2021},
url = {https://doi.org/10.1093/bib/bbz134},
doi = {10.1093/BIB/BBZ134},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ZhangDYX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/MengCSCWGYK21,
author = {Qingren Meng and
Yanan Chu and
Changjun Shao and
Jing Chen and
Jian Wang and
Zhancheng Gao and
Jun Yu and
Yu Kang},
title = {Roles of host small RNAs in the evolution and host tropism of coronaviruses},
journal = {Briefings Bioinform.},
volume = {22},
number = {2},
pages = {1096--1105},
year = {2021},
url = {https://doi.org/10.1093/bib/bbab027},
doi = {10.1093/BIB/BBAB027},
timestamp = {Thu, 02 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/MengCSCWGYK21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiaoLXDWRYZ21,
author = {Ming Xiao and
Guangdi Liu and
Jianghang Xie and
Zichun Dai and
Zihao Wei and
Ziyao Ren and
Jun Yu and
Le Zhang},
title = {2019nCoVAS: Developing the Web Service for Epidemic Transmission Prediction,
Genome Analysis, and Psychological Stress Assessment for 2019-nCoV},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {18},
number = {4},
pages = {1250--1261},
year = {2021},
url = {https://doi.org/10.1109/TCBB.2021.3049617},
doi = {10.1109/TCBB.2021.3049617},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XiaoLXDWRYZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/0002S0ZXB20,
author = {Zhang Zhang and
Shuhui Song and
Jun Yu and
Wenming Zhao and
Jing{-}Fa Xiao and
Yiming Bao},
title = {The Elements of Data Sharing},
journal = {Genom. Proteom. Bioinform.},
volume = {18},
number = {1},
pages = {1--4},
year = {2020},
url = {https://doi.org/10.1016/j.gpb.2020.04.001},
doi = {10.1016/J.GPB.2020.04.001},
timestamp = {Wed, 28 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/0002S0ZXB20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/LiangLWZGHYZGH20,
author = {Yuan Liang and
Dengxue Lu and
Sen Wang and
Yuhui Zhao and
Shenghan Gao and
Rongbing Han and
Jun Yu and
Weili Zheng and
Jianing Geng and
Songnian Hu},
title = {Genome Assembly and Pathway Analysis of Edible Mushroom \emph{Agrocybe
cylindracea}},
journal = {Genom. Proteom. Bioinform.},
volume = {18},
number = {3},
pages = {341--351},
year = {2020},
url = {https://doi.org/10.1016/j.gpb.2018.10.009},
doi = {10.1016/J.GPB.2018.10.009},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/LiangLWZGHYZGH20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ChiWLWLJYXY20,
author = {Shan Chi and
Guoliang Wang and
Tao Liu and
Xumin Wang and
Cui Liu and
Yuemei Jin and
Hongxin Yin and
Xin Xu and
Jun Yu},
title = {Transcriptomic and Proteomic Analysis of Mannitol-metabolism-associated
Genes in \emph{Saccharina japonica}},
journal = {Genom. Proteom. Bioinform.},
volume = {18},
number = {4},
pages = {415--429},
year = {2020},
url = {https://doi.org/10.1016/j.gpb.2018.12.012},
doi = {10.1016/J.GPB.2018.12.012},
timestamp = {Sat, 31 Jul 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/ChiWLWLJYXY20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/Yu20,
author = {Jun Yu},
title = {From Mutation Signature to Molecular Mechanism in the {RNA} World:
{A} Case of SARS-CoV-2},
journal = {Genom. Proteom. Bioinform.},
volume = {18},
number = {6},
pages = {627--639},
year = {2020},
url = {https://doi.org/10.1016/j.gpb.2020.07.003},
doi = {10.1016/J.GPB.2020.07.003},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/Yu20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/TengLLZNXYZS20,
author = {Xufei Teng and
Qianpeng Li and
Zhao Li and
Yuansheng Zhang and
Guangyi Niu and
Jing{-}Fa Xiao and
Jun Yu and
Zhang Zhang and
Shuhui Song},
title = {Compositional Variability and Mutation Spectra of Monophyletic SARS-CoV-2
Clades},
journal = {Genom. Proteom. Bioinform.},
volume = {18},
number = {6},
pages = {648--663},
year = {2020},
url = {https://doi.org/10.1016/j.gpb.2020.10.003},
doi = {10.1016/J.GPB.2020.10.003},
timestamp = {Mon, 25 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/TengLLZNXYZS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tcbb/XiaoYYZ20,
author = {Ming Xiao and
Xiangyu Yang and
Jun Yu and
Le Zhang},
title = {{CGIDLA:} Developing the Web Server for CpG Island Related Density
and LAUPs (Lineage-Associated Underrepresented Permutations) Study},
journal = {{IEEE} {ACM} Trans. Comput. Biol. Bioinform.},
volume = {17},
number = {6},
pages = {2148--2154},
year = {2020},
url = {https://doi.org/10.1109/TCBB.2019.2935971},
doi = {10.1109/TCBB.2019.2935971},
timestamp = {Mon, 03 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tcbb/XiaoYYZ20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhangYEGG19,
author = {Zhang Zhang and
Jun Yu and
Frank Eisenhaber and
Xin Gao and
Takashi Gojobori},
title = {In Memory of Vladimir B. Bajic {(1952-2019)}},
journal = {Genom. Proteom. Bioinform.},
volume = {17},
number = {5},
pages = {473--474},
year = {2019},
url = {https://doi.org/10.1016/j.gpb.2019.12.001},
doi = {10.1016/J.GPB.2019.12.001},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/ZhangYEGG19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ShiGLZMKY19,
author = {Xing Shi and
Zhancheng Gao and
Qiang Lin and
Liping Zhao and
Qin Ma and
Yu Kang and
Jun Yu},
title = {Meta-analysis Reveals Potential Influence of Oxidative Stress on the
Airway Microbiomes of Cystic Fibrosis Patients},
journal = {Genom. Proteom. Bioinform.},
volume = {17},
number = {6},
pages = {590--602},
year = {2019},
url = {https://doi.org/10.1016/j.gpb.2018.03.009},
doi = {10.1016/J.GPB.2018.03.009},
timestamp = {Mon, 06 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ShiGLZMKY19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhangXZY18,
author = {Le Zhang and
Ming Xiao and
Jingsong Zhou and
Jun Yu},
title = {Lineage-associated underrepresented permutations (LAUPs) of mammalian
genomic sequences based on a Jellyfish-based LAUPs analysis application
{(JBLA)}},
journal = {Bioinform.},
volume = {34},
number = {21},
pages = {3624--3630},
year = {2018},
url = {https://doi.org/10.1093/bioinformatics/bty392},
doi = {10.1093/BIOINFORMATICS/BTY392},
timestamp = {Fri, 06 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhangXZY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/Yu18,
author = {Jun Yu},
title = {A \emph{Scientist Guerilla Fighter} in the Frontiers of Bioinformatics
- In Memory of Bailin Hao},
journal = {Genom. Proteom. Bioinform.},
volume = {16},
number = {5},
pages = {307--309},
year = {2018},
url = {https://doi.org/10.1016/j.gpb.2018.11.001},
doi = {10.1016/J.GPB.2018.11.001},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/Yu18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/LiuWLGDZAYH18,
author = {Wanfei Liu and
Shuangyang Wu and
Qiang Lin and
Shenghan Gao and
Feng Ding and
Xiaowei Zhang and
Hasan Awad Aljohi and
Jun Yu and
Songnian Hu},
title = {{RGAAT:} {A} Reference-based Genome Assembly and Annotation Tool for
New Genomes and Upgrade of Known Genomes},
journal = {Genom. Proteom. Bioinform.},
volume = {16},
number = {5},
pages = {373--381},
year = {2018},
url = {https://doi.org/10.1016/j.gpb.2018.03.006},
doi = {10.1016/J.GPB.2018.03.006},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/LiuWLGDZAYH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/SongTZHY18,
author = {Shuhui Song and
Dongmei Tian and
Zhang Zhang and
Songnian Hu and
Jun Yu},
title = {Rice Genomics: over the Past Two Decades and into the Future},
journal = {Genom. Proteom. Bioinform.},
volume = {16},
number = {6},
pages = {397--404},
year = {2018},
url = {https://doi.org/10.1016/j.gpb.2019.01.001},
doi = {10.1016/J.GPB.2019.01.001},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/SongTZHY18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcb/WuLAAALYH18,
author = {Shuangyang Wu and
Wanfei Liu and
Hasan Awad Aljohi and
Sarah A. Alromaih and
Ibrahim O. Alanazi and
Qiang Lin and
Jun Yu and
Songnian Hu},
title = {{REDO:} {RNA} Editing Detection in Plant Organelles Based on Variant
Calling Results},
journal = {J. Comput. Biol.},
volume = {25},
number = {5},
pages = {509--516},
year = {2018},
url = {https://doi.org/10.1089/cmb.2017.0214},
doi = {10.1089/CMB.2017.0214},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcb/WuLAAALYH18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ShengWSLXSFCYX17,
author = {Xin Sheng and
Jiayan Wu and
Qianqian Sun and
Xue Li and
Feng Xian and
Manman Sun and
Wan Fang and
Meili Chen and
Jun Yu and
Jing{-}Fa Xiao},
title = {{MTD:} a mammalian transcriptomic database to explore gene expression
and regulation},
journal = {Briefings Bioinform.},
volume = {18},
number = {1},
pages = {28--36},
year = {2017},
url = {https://doi.org/10.1093/bib/bbv117},
doi = {10.1093/BIB/BBV117},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/ShengWSLXSFCYX17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/AljohiLLYH17,
author = {Hasan Awad Aljohi and
Wanfei Liu and
Qiang Lin and
Jun Yu and
Songnian Hu},
title = {{ISVASE:} identification of sequence variant associated with splicing
event using RNA-seq data},
journal = {{BMC} Bioinform.},
volume = {18},
number = {1},
pages = {320},
year = {2017},
url = {https://doi.org/10.1186/s12859-017-1732-7},
doi = {10.1186/S12859-017-1732-7},
timestamp = {Mon, 26 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/AljohiLLYH17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/Yu17,
author = {Jun Yu},
title = {A Piece of History that Cannot Be Missed for Precision Medicine},
journal = {Genom. Proteom. Bioinform.},
volume = {15},
number = {1},
pages = {1--2},
year = {2017},
url = {https://doi.org/10.1016/j.gpb.2017.01.003},
doi = {10.1016/J.GPB.2017.01.003},
timestamp = {Mon, 06 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/Yu17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/Yu17a,
author = {Jun Yu},
title = {A Step Forward in Precision Medicine on "One Belt One Road"},
journal = {Genom. Proteom. Bioinform.},
volume = {15},
number = {4},
pages = {219},
year = {2017},
url = {https://doi.org/10.1016/j.gpb.2017.08.001},
doi = {10.1016/J.GPB.2017.08.001},
timestamp = {Mon, 06 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/Yu17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/Yu16,
author = {Jun Yu},
title = {Precision Medicine: What Do We Expect in the Scope of Basic Biomedical
Sciences?},
journal = {Genom. Proteom. Bioinform.},
volume = {14},
number = {1},
pages = {1--3},
year = {2016},
url = {https://doi.org/10.1016/j.gpb.2016.02.001},
doi = {10.1016/J.GPB.2016.02.001},
timestamp = {Mon, 06 Dec 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/Yu16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/XueLYZCWWGZLHXX16,
author = {Yu Xue and
Eric{-}Wubbo Lameijer and
Kai Ye and
Kunlin Zhang and
Suhua Chang and
Xiaoyue Wang and
Jianmin Wu and
Ge Gao and
Fangqing Zhao and
Jian Li and
Chunsheng Han and
Shuhua Xu and
Jing{-}Fa Xiao and
Xuerui Yang and
Xiaomin Ying and
Xuegong Zhang and
Wei{-}Hua Chen and
Yun Liu and
Zhang Zhang and
Kun Huang and
Jun Yu},
title = {Precision Medicine: What Challenges Are We Facing?},
journal = {Genom. Proteom. Bioinform.},
volume = {14},
number = {5},
pages = {253--261},
year = {2016},
url = {https://doi.org/10.1016/j.gpb.2016.10.001},
doi = {10.1016/J.GPB.2016.10.001},
timestamp = {Wed, 27 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/XueLYZCWWGZLHXX16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZouMYZ15,
author = {Dong Zou and
Lina Ma and
Jun Yu and
Zhang Zhang},
title = {Biological Databases for Human Research},
journal = {Genom. Proteom. Bioinform.},
volume = {13},
number = {1},
pages = {55--63},
year = {2015},
url = {https://doi.org/10.1016/j.gpb.2015.01.006},
doi = {10.1016/J.GPB.2015.01.006},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/ZouMYZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/XiaoZWY15,
author = {Jing{-}Fa Xiao and
Zhewen Zhang and
Jiayan Wu and
Jun Yu},
title = {A Brief Review of Software Tools for Pangenomics},
journal = {Genom. Proteom. Bioinform.},
volume = {13},
number = {1},
pages = {73--76},
year = {2015},
url = {https://doi.org/10.1016/j.gpb.2015.01.007},
doi = {10.1016/J.GPB.2015.01.007},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/XiaoZWY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/MaLZXXYBZ15,
author = {Lina Ma and
Ang Li and
Dong Zou and
Xingjian Xu and
Lin Xia and
Jun Yu and
Vladimir B. Bajic and
Zhang Zhang},
title = {LncRNAWiki: harnessing community knowledge in collaborative curation
of human long non-coding RNAs},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {187--192},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1167},
doi = {10.1093/NAR/GKU1167},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/MaLZXXYBZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangY15,
author = {Dapeng Wang and
Jun Yu},
title = {Plastid-LCGbase: a collection of evolutionarily conserved plastid-associated
gene pairs},
journal = {Nucleic Acids Res.},
volume = {43},
number = {Database-Issue},
pages = {990--995},
year = {2015},
url = {https://doi.org/10.1093/nar/gku1070},
doi = {10.1093/NAR/GKU1070},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WangY15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoJYLZYWX14,
author = {Yongbing Zhao and
Xinmiao Jia and
Junhui Yang and
Yunchao Ling and
Zhang Zhang and
Jun Yu and
Jiayan Wu and
Jing{-}Fa Xiao},
title = {PanGP: {A} tool for quickly analyzing bacterial pan-genome profile},
journal = {Bioinform.},
volume = {30},
number = {9},
pages = {1297--1299},
year = {2014},
url = {https://doi.org/10.1093/bioinformatics/btu017},
doi = {10.1093/BIOINFORMATICS/BTU017},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoJYLZYWX14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcgenomics/WangZZXLDZZYWD14,
author = {Fu{-}Qiang Wang and
Jun Zhong and
Ying Zhao and
Jing{-}Fa Xiao and
Jing Liu and
Meng Dai and
Guizhen Zheng and
Li Zhang and
Jun Yu and
Jiayan Wu and
Baoling Duan},
title = {Genome sequencing of high-penicillin producing industrial strain of
Penicillium chrysogenum},
journal = {{BMC} Genom.},
volume = {15},
number = {{S-1}},
pages = {S11},
year = {2014},
url = {https://doi.org/10.1186/1471-2164-15-S1-S11},
doi = {10.1186/1471-2164-15-S1-S11},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcgenomics/WangZZXLDZZYWD14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/WuXZWHY14,
author = {Jiayan Wu and
Jing{-}Fa Xiao and
Zhang Zhang and
Xumin Wang and
Songnian Hu and
Jun Yu},
title = {Ribogenomics: the Science and Knowledge of {RNA}},
journal = {Genom. Proteom. Bioinform.},
volume = {12},
number = {2},
pages = {57--63},
year = {2014},
url = {https://doi.org/10.1016/j.gpb.2014.04.002},
doi = {10.1016/J.GPB.2014.04.002},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/WuXZWHY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/XuXLDGZYCH14,
author = {Wei Xu and
Chengqi Xin and
Qiang Lin and
Feng Ding and
Wei Gong and
Yuanyuan Zhou and
Jun Yu and
Peng Cui and
Songnian Hu},
title = {Adolescent Mouse Takes on An Active Transcriptomic Expression During
Postnatal Cerebral Development},
journal = {Genom. Proteom. Bioinform.},
volume = {12},
number = {3},
pages = {111--119},
year = {2014},
url = {https://doi.org/10.1016/j.gpb.2014.04.004},
doi = {10.1016/J.GPB.2014.04.004},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/XuXLDGZYCH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/GaoKYR14,
author = {Zhancheng Gao and
Yu Kang and
Jun Yu and
Lufeng Ren},
title = {Human Pharyngeal Microbiome May Play {A} Protective Role in Respiratory
Tract Infections},
journal = {Genom. Proteom. Bioinform.},
volume = {12},
number = {3},
pages = {144--150},
year = {2014},
url = {https://doi.org/10.1016/j.gpb.2014.06.001},
doi = {10.1016/J.GPB.2014.06.001},
timestamp = {Thu, 02 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/GaoKYR14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/PanGZLYH14,
author = {Linlin Pan and
Wei Gong and
Yuanyuan Zhou and
Xiaonuan Li and
Jun Yu and
Songnian Hu},
title = {A Comprehensive Transcriptomic Analysis of Infant and Adult Mouse
Ovary},
journal = {Genom. Proteom. Bioinform.},
volume = {12},
number = {5},
pages = {239--248},
year = {2014},
url = {https://doi.org/10.1016/j.gpb.2014.08.002},
doi = {10.1016/J.GPB.2014.08.002},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/PanGZLYH14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhangSMWWHZLLHTXWWXDCHY14,
author = {Zhang Zhang and
Jian Sang and
Lina Ma and
Gang Wu and
Hao Wu and
Dawei Huang and
Dong Zou and
Siqi Liu and
Ang Li and
Lili Hao and
Ming Tian and
Chao Xu and
Xumin Wang and
Jiayan Wu and
Jing{-}Fa Xiao and
Lin Dai and
Ling{-}Ling Chen and
Songnian Hu and
Jun Yu},
title = {RiceWiki: a wiki-based database for community curation of rice genes},
journal = {Nucleic Acids Res.},
volume = {42},
number = {Database-Issue},
pages = {1222--1228},
year = {2014},
url = {https://doi.org/10.1093/nar/gkt926},
doi = {10.1093/NAR/GKT926},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZhangSMWWHZLLHTXWWXDCHY14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhangY13,
author = {Zhang Zhang and
Jun Yu},
title = {Does the Genetic Code Have {A} Eukaryotic Origin?},
journal = {Genom. Proteom. Bioinform.},
volume = {11},
number = {1},
pages = {41--55},
year = {2013},
url = {https://doi.org/10.1016/j.gpb.2013.01.001},
doi = {10.1016/J.GPB.2013.01.001},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ZhangY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/LiSLY13,
author = {Yuli Li and
Shuhui Song and
Cuiping Li and
Jun Yu},
title = {MeRIP-PF: An Easy-to-use Pipeline for High-resolution Peak-finding
in MeRIP-Seq Data},
journal = {Genom. Proteom. Bioinform.},
volume = {11},
number = {1},
pages = {72--75},
year = {2013},
url = {https://doi.org/10.1016/j.gpb.2013.01.002},
doi = {10.1016/J.GPB.2013.01.002},
timestamp = {Tue, 07 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/LiSLY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangXLHY13,
author = {Dapeng Wang and
Yan Xia and
Xinna Li and
Lixia Hou and
Jun Yu},
title = {The Rice Genome Knowledgebase (RGKbase): an annotation database for
rice comparative genomics and evolutionary biology},
journal = {Nucleic Acids Res.},
volume = {41},
number = {Database-Issue},
pages = {1199--1205},
year = {2013},
url = {https://doi.org/10.1093/nar/gks1225},
doi = {10.1093/NAR/GKS1225},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WangXLHY13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoWYSXY12,
author = {Yongbing Zhao and
Jiayan Wu and
Junhui Yang and
Shixiang Sun and
Jing{-}Fa Xiao and
Jun Yu},
title = {{PGAP:} pan-genomes analysis pipeline},
journal = {Bioinform.},
volume = {28},
number = {3},
pages = {416--418},
year = {2012},
url = {https://doi.org/10.1093/bioinformatics/btr655},
doi = {10.1093/BIOINFORMATICS/BTR655},
timestamp = {Sun, 12 Feb 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoWYSXY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZhangLCDLTY12,
author = {Zhang Zhang and
Jun Li and
Peng Cui and
Feng Ding and
Ang Li and
Jeffrey P. Townsend and
Jun Yu},
title = {Codon Deviation Coefficient: a novel measure for estimating codon
usage bias and its statistical significance},
journal = {{BMC} Bioinform.},
volume = {13},
pages = {43},
year = {2012},
url = {https://doi.org/10.1186/1471-2105-13-43},
doi = {10.1186/1471-2105-13-43},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ZhangLCDLTY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/CuiDLZLZHY12,
author = {Peng Cui and
Feng Ding and
Qiang Lin and
Lingfang Zhang and
Ang Li and
Zhang Zhang and
Songnian Hu and
Jun Yu},
title = {Distinct Contributions of Replication and Transcription to Mutation
Rate Variation of Human Genomes},
journal = {Genom. Proteom. Bioinform.},
volume = {10},
number = {1},
pages = {4--10},
year = {2012},
url = {https://doi.org/10.1016/S1672-0229(11)60028-4},
doi = {10.1016/S1672-0229(11)60028-4},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/CuiDLZLZHY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/CuiLDHY12,
author = {Peng Cui and
Qiang Lin and
Feng Ding and
Songnian Hu and
Jun Yu},
title = {The Transcript-centric Mutations in Human Genomes},
journal = {Genom. Proteom. Bioinform.},
volume = {10},
number = {1},
pages = {11--22},
year = {2012},
url = {https://doi.org/10.1016/S1672-0229(11)60029-6},
doi = {10.1016/S1672-0229(11)60029-6},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/CuiLDHY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/CuiLZLDXGSSHY12,
author = {Peng Cui and
Wanfei Liu and
Yuhui Zhao and
Qiang Lin and
Feng Ding and
Chengqi Xin and
Jianing Geng and
Shuhui Song and
Fanglin Sun and
Songnian Hu and
Jun Yu},
title = {The Association Between H3K4me3 and Antisense Transcription},
journal = {Genom. Proteom. Bioinform.},
volume = {10},
number = {2},
pages = {74--81},
year = {2012},
url = {https://doi.org/10.1016/j.gpb.2012.05.001},
doi = {10.1016/J.GPB.2012.05.001},
timestamp = {Wed, 13 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/CuiLZLDXGSSHY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/CuiLZLZDXZSSYH12,
author = {Peng Cui and
Wanfei Liu and
Yuhui Zhao and
Qiang Lin and
Daoyong Zhang and
Feng Ding and
Chengqi Xin and
Zhang Zhang and
Shuhui Song and
Fanglin Sun and
Jun Yu and
Songnian Hu},
title = {Comparative Analyses of {H3K4} and {H3K27} Trimethylations Between
the Mouse Cerebrum and Testis},
journal = {Genom. Proteom. Bioinform.},
volume = {10},
number = {2},
pages = {82--93},
year = {2012},
url = {https://doi.org/10.1016/j.gpb.2012.05.007},
doi = {10.1016/J.GPB.2012.05.007},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/CuiLZLZDXZSSYH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhangY12,
author = {Zhang Zhang and
Jun Yu},
title = {The Pendulum Model for Genome Compositional Dynamics: from the Four
Nucleotides to the Twenty Amino Acids},
journal = {Genom. Proteom. Bioinform.},
volume = {10},
number = {4},
pages = {175--180},
year = {2012},
url = {https://doi.org/10.1016/j.gpb.2012.08.002},
doi = {10.1016/J.GPB.2012.08.002},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ZhangY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/WuQWZHY12,
author = {Hao Wu and
Hongzhu Qu and
Ning Wan and
Zhang Zhang and
Songnian Hu and
Jun Yu},
title = {Strand-biased Gene Distribution in Bacteria Is Related to both Horizontal
Gene Transfer and Strand-biased Nucleotide Composition},
journal = {Genom. Proteom. Bioinform.},
volume = {10},
number = {4},
pages = {186--196},
year = {2012},
url = {https://doi.org/10.1016/j.gpb.2012.08.001},
doi = {10.1016/J.GPB.2012.08.001},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/WuQWZHY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/MaNLZSSYYFHZY12,
author = {Lina Ma and
Linghu Nie and
Jing Liu and
Bing Zhang and
Shuhui Song and
Min Sun and
Jin Yang and
Yadong Yang and
Xiangdong Fang and
Songnian Hu and
Yongliang Zhao and
Jun Yu},
title = {An RNA-seq-based Gene Expression Profiling of Radiation-induced Tumorigenic
Mammary Epithelial Cells},
journal = {Genom. Proteom. Bioinform.},
volume = {10},
number = {6},
pages = {326--335},
year = {2012},
url = {https://doi.org/10.1016/j.gpb.2012.11.001},
doi = {10.1016/J.GPB.2012.11.001},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/MaNLZSSYYFHZY12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isb/BuWCXYCJ12,
author = {Jingde Bu and
Jiayan Wu and
Meili Chen and
Jing{-}Fa Xiao and
Jun Yu and
Xuebin Chi and
Zhong Jin},
title = {BAsplice: Bi-direction alignment for detecting splice junctions},
booktitle = {6th {IEEE} International Conference on Systems Biology, {ISB} 2012,
Xian, China, August 18-20, 2012},
pages = {252--255},
publisher = {{IEEE}},
year = {2012},
url = {https://doi.org/10.1109/ISB.2012.6314145},
doi = {10.1109/ISB.2012.6314145},
timestamp = {Wed, 16 Oct 2019 14:14:55 +0200},
biburl = {https://dblp.org/rec/conf/isb/BuWCXYCJ12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhangY11,
author = {Zhang Zhang and
Jun Yu},
title = {On the Organizational Dynamics of the Genetic Code},
journal = {Genom. Proteom. Bioinform.},
volume = {9},
number = {1-2},
pages = {21--29},
year = {2011},
url = {https://doi.org/10.1016/S1672-0229(11)60004-1},
doi = {10.1016/S1672-0229(11)60004-1},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ZhangY11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhangLLPZYH11,
author = {Tongwu Zhang and
Yingfeng Luo and
Kan Liu and
Linlin Pan and
Bing Zhang and
Jun Yu and
Songnian Hu},
title = {BIGpre: {A} Quality Assessment Package for Next-Generation Sequencing
Data},
journal = {Genom. Proteom. Bioinform.},
volume = {9},
number = {6},
pages = {238--244},
year = {2011},
url = {https://doi.org/10.1016/S1672-0229(11)60027-2},
doi = {10.1016/S1672-0229(11)60027-2},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/ZhangLLPZYH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/WangZZZY10,
author = {Dapeng Wang and
Yubin Zhang and
Zhang Zhang and
Jiang Zhu and
Jun Yu},
title = {KaKs{\_}Calculator 2.0: {A} Toolkit Incorporating Gamma-Series Methods
and Sliding Window Strategies},
journal = {Genom. Proteom. Bioinform.},
volume = {8},
number = {1},
pages = {77--80},
year = {2010},
url = {https://doi.org/10.1016/S1672-0229(10)60008-3},
doi = {10.1016/S1672-0229(10)60008-3},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/WangZZZY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/HeTJHY10,
author = {Ximiao He and
Shu Tao and
Jing Jin and
Songnian Hu and
Jun Yu},
title = {The Most Redundant Sequences in Human CpG Island Library Are Derived
from Mitochondrial Genome},
journal = {Genom. Proteom. Bioinform.},
volume = {8},
number = {2},
pages = {81--91},
year = {2010},
url = {https://doi.org/10.1016/S1672-0229(10)60009-5},
doi = {10.1016/S1672-0229(10)60009-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/HeTJHY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ChenWYLXHY10,
author = {Kaifu Chen and
Lei Wang and
Meng Yang and
Jiucheng Liu and
Chengqi Xin and
Songnian Hu and
Jun Yu},
title = {Sequence Signatures of Nucleosome Positioning in Caenorhabditis elegans},
journal = {Genom. Proteom. Bioinform.},
volume = {8},
number = {2},
pages = {92--102},
year = {2010},
url = {https://doi.org/10.1016/S1672-0229(10)60010-1},
doi = {10.1016/S1672-0229(10)60010-1},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ChenWYLXHY10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/WangZLZLZLNLLWLMSLWYYW10,
author = {Jun Wang and
Jianguo Zhang and
Ruiqiang Li and
Hongkun Zheng and
Jun Li and
Yong Zhang and
Heng Li and
Peixiang Ni and
Songgang Li and
Shengting Li and
Jingqiang Wang and
Dongyuan Liu and
Jason E. McDermott and
Ram Samudrala and
Siqi Liu and
Jian Wang and
Huanming Yang and
Jun Yu and
Gane Ka{-}Shu Wong},
title = {Evolutionary Transients in the Rice Transcriptome},
journal = {Genom. Proteom. Bioinform.},
volume = {8},
number = {4},
pages = {211--228},
year = {2010},
url = {https://doi.org/10.1016/S1672-0229(10)60023-X},
doi = {10.1016/S1672-0229(10)60023-X},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/WangZLZLZLNLLWLMSLWYYW10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/LiuHLHYGS10,
author = {Wanfei Liu and
Dawei Huang and
Kan Liu and
Songnian Hu and
Jun Yu and
Gang Gao and
Shuhui Song},
title = {Discovery, Identification and Comparative Analysis of Non-Specific
Lipid Transfer Protein (nsLtp) Family in Solanaceae},
journal = {Genom. Proteom. Bioinform.},
volume = {8},
number = {4},
pages = {229--237},
year = {2010},
url = {https://doi.org/10.1016/S1672-0229(10)60024-1},
doi = {10.1016/S1672-0229(10)60024-1},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/LiuHLHYGS10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhangZZPWHLYH09,
author = {Guoqiang Zhang and
Lingxia Zhang and
Mingcheng Zhang and
Linlin Pan and
Fengyu Wang and
Jun Huang and
Guoli Li and
Jun Yu and
Songnian Hu},
title = {Screening and Assessing 11 Mycobacterium tuberculosis Proteins as
Potential Serodiagnostical Markers for Discriminating {TB} Patients
from {BCG} Vaccinees},
journal = {Genom. Proteom. Bioinform.},
volume = {7},
number = {3},
pages = {107--115},
year = {2009},
url = {https://doi.org/10.1016/S1672-0229(08)60039-X},
doi = {10.1016/S1672-0229(08)60039-X},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ZhangZZPWHLYH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/WangZHZHY09,
author = {Dapeng Wang and
Song Zhang and
Fuhong He and
Jiang Zhu and
Songnian Hu and
Jun Yu},
title = {How Do Variable Substitution Rates Influence Ka and Ks Calculations?},
journal = {Genom. Proteom. Bioinform.},
volume = {7},
number = {3},
pages = {116--127},
year = {2009},
url = {https://doi.org/10.1016/S1672-0229(08)60040-6},
doi = {10.1016/S1672-0229(08)60040-6},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/gpb/WangZHZHY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/CaiYHY09,
author = {Yimei Cai and
Xiaomin Yu and
Songnian Hu and
Jun Yu},
title = {A Brief Review on the Mechanisms of miRNA Regulation},
journal = {Genom. Proteom. Bioinform.},
volume = {7},
number = {4},
pages = {147--154},
year = {2009},
url = {https://doi.org/10.1016/S1672-0229(08)60044-3},
doi = {10.1016/S1672-0229(08)60044-3},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/CaiYHY09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/WangLGBSSXSHY08,
author = {Weiwei Wang and
Qibin Luo and
Haiyan Guo and
Peter Bossier and
Gilbert Van Stappen and
Patrick Sorgeloos and
Naihong Xin and
Qishi Sun and
Songnian Hu and
Jun Yu},
title = {Phylogenetic Analysis of Brine Shrimp (Artemia) in China Using {DNA}
Barcoding},
journal = {Genom. Proteom. Bioinform.},
volume = {6},
number = {3-4},
pages = {155--162},
year = {2008},
url = {https://doi.org/10.1016/S1672-0229(09)60003-6},
doi = {10.1016/S1672-0229(09)60003-6},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/WangLGBSSXSHY08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/XiaoY07,
author = {Jing{-}Fa Xiao and
Jun Yu},
title = {A Scenario on the Stepwise Evolution of the Genetic Code},
journal = {Genom. Proteom. Bioinform.},
volume = {5},
number = {3-4},
pages = {143--151},
year = {2007},
url = {https://doi.org/10.1016/S1672-0229(08)60001-7},
doi = {10.1016/S1672-0229(08)60001-7},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/XiaoY07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ChangZLZWZFZGWYYW07,
author = {Suhua Chang and
Jiajie Zhang and
Xiaoyun Liao and
Xinxing Zhu and
Dahai Wang and
Jiang Zhu and
Tao Feng and
Baoli Zhu and
George F. Gao and
Jian Wang and
Huanming Yang and
Jun Yu and
Jing Wang},
title = {Influenza Virus Database {(IVDB):} an integrated information resource
and analysis platform for influenza virus research},
journal = {Nucleic Acids Res.},
volume = {35},
number = {Database-Issue},
pages = {376--380},
year = {2007},
url = {https://doi.org/10.1093/nar/gkl779},
doi = {10.1093/NAR/GKL779},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/nar/ChangZLZWZFZGWYYW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhangY06,
author = {Zhang Zhang and
Jun Yu},
title = {Evaluation of Six Methods for Estimating Synonymous and Nonsynonymous
Substitution Rates},
journal = {Genom. Proteom. Bioinform.},
volume = {4},
number = {3},
pages = {173--181},
year = {2006},
url = {https://doi.org/10.1016/S1672-0229(06)60030-2},
doi = {10.1016/S1672-0229(06)60030-2},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ZhangY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhaoHY06,
author = {Xiao{-}Qian Zhao and
Jian{-}Fei Hu and
Jun Yu},
title = {Comparative Analysis of Eubacterial {DNA} Polymerase {III} Alpha Subunits},
journal = {Genom. Proteom. Bioinform.},
volume = {4},
number = {4},
pages = {203--211},
year = {2006},
url = {https://doi.org/10.1016/S1672-0229(07)60001-1},
doi = {10.1016/S1672-0229(07)60001-1},
timestamp = {Thu, 20 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ZhaoHY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/gpb/ZhangLZWWY06,
author = {Zhang Zhang and
Jun Li and
Xiao{-}Qian Zhao and
Jun Wang and
Gane Ka{-}Shu Wong and
Jun Yu},
title = {KaKs{\_}Calculator: Calculating Ka and Ks Through Model Selection
and Model Averaging},
journal = {Genom. Proteom. Bioinform.},
volume = {4},
number = {4},
pages = {259--263},
year = {2006},
url = {https://doi.org/10.1016/S1672-0229(07)60007-2},
doi = {10.1016/S1672-0229(07)60007-2},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/gpb/ZhangLZWWY06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangXHDRCYYHLFYLWLWYWXZY05,
author = {Jing Wang and
Qingyou Xia and
Ximiao He and
Mingtao Dai and
Jue Ruan and
Jie Chen and
Guo Yu and
Haifeng Yuan and
Yafeng Hu and
Ruiqiang Li and
Tao Feng and
Chen Ye and
Cheng Lu and
Jun Wang and
Songgang Li and
Gane Ka{-}Shu Wong and
Huanming Yang and
Jian Wang and
Zhonghuai Xiang and
Zeyang Zhou and
Jun Yu},
title = {SilkDB: a knowledgebase for silkworm biology and genomics},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {399--402},
year = {2005},
url = {https://doi.org/10.1093/nar/gki116},
doi = {10.1093/NAR/GKI116},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WangXHDRCYYHLFYLWLWYWXZY05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/WangHRDCZHYLCFLLWBWYYW05,
author = {Jing Wang and
Ximiao He and
Jue Ruan and
Mingtao Dai and
Jie Chen and
Yong Zhang and
Yafeng Hu and
Chen Ye and
Shengting Li and
Lijuan Cong and
Lin Fang and
Bin Liu and
Songgang Li and
Jian Wang and
David W. Burt and
Gane Ka{-}Shu Wong and
Jun Yu and
Huanming Yang and
Jun Wang},
title = {ChickVD: a sequence variation database for the chicken genome},
journal = {Nucleic Acids Res.},
volume = {33},
number = {Database-Issue},
pages = {438--441},
year = {2005},
url = {https://doi.org/10.1093/nar/gki092},
doi = {10.1093/NAR/GKI092},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/WangHRDCZHYLCFLLWBWYYW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ploscb/LiYLWHYWYYWW05,
author = {Ruiqiang Li and
Jia Ye and
Songgang Li and
Jing Wang and
Yujun Han and
Chen Ye and
Jian Wang and
Huanming Yang and
Jun Yu and
Gane Ka{-}Shu Wong and
Jun Wang},
title = {ReAS: Recovery of Ancestral Sequences for Transposable Elements from
the Unassembled Reads of a Whole Genome Shotgun},
journal = {PLoS Comput. Biol.},
volume = {1},
number = {4},
year = {2005},
url = {https://doi.org/10.1371/journal.pcbi.0010043},
doi = {10.1371/JOURNAL.PCBI.0010043},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ploscb/LiYLWHYWYYWW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/nar/ZhaoWHHJDWFCRZNZLWWZYYW04,
author = {Wenming Zhao and
Jing Wang and
Ximiao He and
Xiaobing Huang and
Yongzhi Jiao and
Mingtao Dai and
Shulin Wei and
Jian Fu and
Ye Chen and
Xiaoyu Ren and
Yong Zhang and
Peixiang Ni and
Jianguo Zhang and
Songgang Li and
Jian Wang and
Gane Ka{-}Shu Wong and
Hongyu Zhao and
Jun Yu and
Huanming Yang and
Jun Wang},
title = {{BGI-RIS:} an integrated information resource and comparative analysis
workbench for rice genomics},
journal = {Nucleic Acids Res.},
volume = {32},
number = {Database-Issue},
pages = {377--382},
year = {2004},
url = {https://doi.org/10.1093/nar/gkh085},
doi = {10.1093/NAR/GKH085},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/nar/ZhaoWHHJDWFCRZNZLWWZYYW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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