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ORCIDBibTeX records: Hongfang Liu
@article{DBLP:journals/artmed/RuanWTCL23,
author = {Xiaoyang Ruan and
Liwei Wang and
Charat Thongprayoon and
Wisit Cheungpasitporn and
Hongfang Liu},
title = {GRU-D-Weibull: {A} novel real-time individualized endpoint prediction},
journal = {Artif. Intell. Medicine},
volume = {146},
pages = {102696},
year = {2023},
url = {https://doi.org/10.1016/j.artmed.2023.102696},
doi = {10.1016/J.ARTMED.2023.102696},
timestamp = {Mon, 01 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/artmed/RuanWTCL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fdgth/FanWHLH23,
author = {Jungwei Fan and
Wanjing Wang and
Ming Huang and
Hongfang Liu and
W. M. Hooten},
title = {Retrospective content analysis of consumer product reviews related
to chronic pain},
journal = {Frontiers Digit. Health},
volume = {5},
year = {2023},
url = {https://doi.org/10.3389/fdgth.2023.958338},
doi = {10.3389/FDGTH.2023.958338},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fdgth/FanWHLH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/DangLHKZFAFDYLJXT23,
author = {Yifang Dang and
Fang Li and
Xinyue Hu and
Vipina Kuttichi Keloth and
Meng Zhang and
Sunyang Fu and
Muhammad F. Amith and
J. Wilfred Fan and
Jingcheng Du and
Evan Yu and
Hongfang Liu and
Xiaoqian Jiang and
Hua Xu and
Cui Tao},
title = {Systematic design and data-driven evaluation of social determinants
of health ontology (SDoHO)},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {9},
pages = {1465--1473},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad096},
doi = {10.1093/JAMIA/OCAD096},
timestamp = {Wed, 30 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/DangLHKZFAFDYLJXT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuWWHFMWHKLASZROHTHSSPCDHFSXL23,
author = {Sijia Liu and
Andrew Wen and
Liwei Wang and
Huan He and
Sunyang Fu and
Robert T. Miller and
Andrew E. Williams and
Daniel R. Harris and
Ramakanth Kavuluru and
Mei Liu and
Noor Abu{-}El{-}Rub and
Dalton Schutte and
Rui Zhang and
Masoud Rouhizadeh and
John D. Osborne and
Yongqun He and
Umit Topaloglu and
Stephanie S. Hong and
Joel H. Saltz and
Thomas Schaffter and
Emily R. Pfaff and
Christopher G. Chute and
Tim Duong and
Melissa A. Haendel and
Rafael Fuentes and
Peter Szolovits and
Hua Xu and
Hongfang Liu},
title = {An open natural language processing {(NLP)} framework for EHR-based
clinical research: a case demonstration using the National {COVID}
Cohort Collaborative {(N3C)}},
journal = {J. Am. Medical Informatics Assoc.},
volume = {30},
number = {12},
pages = {2036--2040},
year = {2023},
url = {https://doi.org/10.1093/jamia/ocad134},
doi = {10.1093/JAMIA/OCAD134},
timestamp = {Sun, 10 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/LiuWWHFMWHKLASZROHTHSSPCDHFSXL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/KelothBGHKLLMNPPRRRSWWWWZBRBRHEX23,
author = {Vipina Kuttichi Keloth and
Juan M. Banda and
Michael J. Gurley and
Paul M. Heider and
Georgina Kennedy and
Hongfang Liu and
Feifan Liu and
Timothy A. Miller and
Karthik Natarajan and
Olga V. Patterson and
Yifan Peng and
Kalpana Raja and
Ruth M. Reeves and
Masoud Rouhizadeh and
Jianlin Shi and
Xiaoyan Wang and
Yanshan Wang and
Wei{-}Qi Wei and
Andrew E. Williams and
Rui Zhang and
Rimma Belenkaya and
Christian G. Reich and
Clair Blacketer and
Patrick B. Ryan and
George Hripcsak and
No{\'{e}}mie Elhadad and
Hua Xu},
title = {Representing and utilizing clinical textual data for real world studies:
An {OHDSI} approach},
journal = {J. Biomed. Informatics},
volume = {142},
pages = {104343},
year = {2023},
url = {https://doi.org/10.1016/j.jbi.2023.104343},
doi = {10.1016/J.JBI.2023.104343},
timestamp = {Thu, 29 Jun 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/KelothBGHKLLMNPPRRRSWWWWZBRBRHEX23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jhir/CombiFHHKLMPPSVY23,
author = {Carlo Combi and
Julio C. Facelli and
Peter Haddawy and
John H. Holmes and
Sabine Koch and
Hongfang Liu and
Jochen Meyer and
Mor Peleg and
Giuseppe Pozzi and
Gregor Stiglic and
Pierangelo Veltri and
Christopher C. Yang},
title = {The {IHI} Rochester Report 2022 on Healthcare Informatics Research:
Resuming After the CoViD-19},
journal = {J. Heal. Informatics Res.},
volume = {7},
number = {2},
pages = {169--202},
year = {2023},
url = {https://doi.org/10.1007/s41666-023-00126-5},
doi = {10.1007/S41666-023-00126-5},
timestamp = {Tue, 12 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jhir/CombiFHHKLMPPSVY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/WenHFLMWRBHL23,
author = {Andrew Wen and
Huan He and
Sunyang Fu and
Sijia Liu and
Kurt Miller and
Liwei Wang and
Kirk E. Roberts and
Steven Bedrick and
William R. Hersh and
Hongfang Liu},
title = {The {IMPACT} framework and implementation for accessible in silico
clinical phenotyping in the digital era},
journal = {npj Digit. Medicine},
volume = {6},
year = {2023},
url = {https://doi.org/10.1038/s41746-023-00878-9},
doi = {10.1038/S41746-023-00878-9},
timestamp = {Sun, 31 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/npjdm/WenHFLMWRBHL23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiW0L23,
author = {Rui Li and
Andrew Wen and
Jing Gao and
Hongfang Liu},
editor = {May D. Wang and
Byung{-}Jun Yoon},
title = {{MLGAN:} a Meta-Learning based Generative Adversarial Network adapter
for rare disease differentiation tasks},
booktitle = {Proceedings of the 14th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2023, Houston,
TX, USA, September 3-6, 2023},
pages = {11:1--11:10},
publisher = {{ACM}},
year = {2023},
url = {https://doi.org/10.1145/3584371.3612967},
doi = {10.1145/3584371.3612967},
timestamp = {Fri, 27 Oct 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LiW0L23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/RenWKMFZFLH23,
author = {Yang Ren and
Dezhi Wu and
Aditya Khurana and
George M. Mastorakos and
Sunyang Fu and
Nansu Zong and
Jungwei Fan and
Hongfang Liu and
Ming Huang},
title = {Classification of Patient Portal Messages with BERT-based Language
Models},
booktitle = {11th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2023, Houston, TX, USA, June 26-29, 2023},
pages = {176--182},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICHI57859.2023.00033},
doi = {10.1109/ICHI57859.2023.00033},
timestamp = {Wed, 17 Jan 2024 17:11:28 +0100},
biburl = {https://dblp.org/rec/conf/ichi/RenWKMFZFLH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/ChenYFZLH23,
author = {Ziyi Chen and
Ren Yang and
Sunyang Fu and
Nansu Zong and
Hongfang Liu and
Ming Huang},
title = {Detecting Reddit Users with Depression Using a Hybrid Neural Network
{SBERT-CNN}},
booktitle = {11th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2023, Houston, TX, USA, June 26-29, 2023},
pages = {193--199},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICHI57859.2023.00035},
doi = {10.1109/ICHI57859.2023.00035},
timestamp = {Wed, 17 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/ChenYFZLH23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/HuangKMZZYPPLC23,
author = {Ming Huang and
Aditya Khurana and
George M. Mastorakos and
Jiawei Zhou and
Nansu Zong and
Yue Yu and
Julie E. Prigge and
Christi A. Patten and
Hongfang Liu and
Brian Costello},
title = {Characterizing the Users of Patient Portal Messaging: {A} Single Institutional
Cohort Study},
booktitle = {11th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2023, Houston, TX, USA, June 26-29, 2023},
pages = {381--387},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICHI57859.2023.00057},
doi = {10.1109/ICHI57859.2023.00057},
timestamp = {Wed, 17 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/HuangKMZZYPPLC23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/LetterGKCLT23,
author = {Christina Letter and
Puneet Gupta and
Annie Kim and
Guang{-}Ting Cong and
Hongfang Liu and
Ahmad P. Tafti},
title = {Gender-Specific Machine Learning Models to Predict Unplanned Return
to Operating Room Following Primary Total Shoulder Arthroplasty},
booktitle = {11th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2023, Houston, TX, USA, June 26-29, 2023},
pages = {717--721},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICHI57859.2023.00131},
doi = {10.1109/ICHI57859.2023.00131},
timestamp = {Wed, 17 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/LetterGKCLT23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/CombiFHHKLMPPSVY23,
author = {Carlo Combi and
Julio C. Facelli and
Peter Haddawy and
John H. Holmes and
Sabine Koch and
Hongfang Liu and
Jochen Meyer and
Mor Peleg and
Giuseppe Pozzi and
Gregor Stiglic and
Pierangelo Veltri and
Christopher C. Yang},
title = {Resuming HealthCare Informatics Research after CoViD-19: the HealthCare
System Perspective},
booktitle = {11th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2023, Houston, TX, USA, June 26-29, 2023},
pages = {760--762},
publisher = {{IEEE}},
year = {2023},
url = {https://doi.org/10.1109/ICHI57859.2023.00140},
doi = {10.1109/ICHI57859.2023.00140},
timestamp = {Wed, 17 Jan 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/CombiFHHKLMPPSVY23.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2302-02759,
author = {Ziyi Chen and
Ren Yang and
Sunyang Fu and
Nansu Zong and
Hongfang Liu and
Ming Huang},
title = {Detecting Reddit Users with Depression Using a Hybrid Neural Network},
journal = {CoRR},
volume = {abs/2302.02759},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2302.02759},
doi = {10.48550/ARXIV.2302.02759},
eprinttype = {arXiv},
eprint = {2302.02759},
timestamp = {Wed, 05 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2302-02759.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2303-08448,
author = {Sicheng Zhou and
Nan Wang and
Liwei Wang and
Ju Sun and
Anne H. Blaes and
Hongfang Liu and
Rui Zhang},
title = {A Cross-institutional Evaluation on Breast Cancer Phenotyping {NLP}
Algorithms on Electronic Health Records},
journal = {CoRR},
volume = {abs/2303.08448},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2303.08448},
doi = {10.48550/ARXIV.2303.08448},
eprinttype = {arXiv},
eprint = {2303.08448},
timestamp = {Mon, 20 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2303-08448.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2305-17100,
author = {Kai Zhang and
Jun Yu and
Zhiling Yan and
Yixin Liu and
Eashan Adhikarla and
Sunyang Fu and
Xun Chen and
Chen Chen and
Yuyin Zhou and
Xiang Li and
Lifang He and
Brian D. Davison and
Quanzheng Li and
Yong Chen and
Hongfang Liu and
Lichao Sun},
title = {BiomedGPT: {A} Unified and Generalist Biomedical Generative Pre-trained
Transformer for Vision, Language, and Multimodal Tasks},
journal = {CoRR},
volume = {abs/2305.17100},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2305.17100},
doi = {10.48550/ARXIV.2305.17100},
eprinttype = {arXiv},
eprint = {2305.17100},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2305-17100.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2308-07452,
author = {Xiaoyang Ruan and
Liwei Wang and
Charat Thongprayoon and
Wisit Cheungpasitporn and
Hongfang Liu},
title = {GRU-D-Weibull: {A} Novel Real-Time Individualized Endpoint Prediction},
journal = {CoRR},
volume = {abs/2308.07452},
year = {2023},
url = {https://doi.org/10.48550/arXiv.2308.07452},
doi = {10.48550/ARXIV.2308.07452},
eprinttype = {arXiv},
eprint = {2308.07452},
timestamp = {Wed, 23 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2308-07452.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/ZongLWNYHCJFWJH22,
author = {Nansu Zong and
Ning Li and
Andrew Wen and
Victoria Ngo and
Yue Yu and
Ming Huang and
Shaika Chowdhury and
Chao Jiang and
Sunyang Fu and
Richard Weinshilboum and
Guoqian Jiang and
Lawrence Hunter and
Hongfang Liu},
title = {{BETA:} a comprehensive benchmark for computational drug-target prediction},
journal = {Briefings Bioinform.},
volume = {23},
number = {4},
year = {2022},
url = {https://doi.org/10.1093/bib/bbac199},
doi = {10.1093/BIB/BBAC199},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bib/ZongLWNYHCJFWJH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/HeFWLWL22,
author = {Huan He and
Sunyang Fu and
Liwei Wang and
Sijia Liu and
Andrew Wen and
Hongfang Liu},
title = {MedTator: a serverless annotation tool for corpus development},
journal = {Bioinform.},
volume = {38},
number = {6},
pages = {1776--1778},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btab880},
doi = {10.1093/BIOINFORMATICS/BTAB880},
timestamp = {Fri, 01 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/HeFWLWL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ZhaoBWWLF22,
author = {Yiqing Zhao and
Matthew Brush and
Chen Wang and
Alex H. Wagner and
Hongfang Liu and
Robert R. Freimuth},
title = {Leveraging a pharmacogenomics knowledgebase to formulate a drug response
phenotype terminology for genomic medicine},
journal = {Bioinform.},
volume = {38},
number = {23},
pages = {5279--5287},
year = {2022},
url = {https://doi.org/10.1093/bioinformatics/btac646},
doi = {10.1093/BIOINFORMATICS/BTAC646},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/ZhaoBWWLF22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/HeYHLNBZPWLOWHT22,
author = {Yongqun He and
Hong Yu and
Anthony Huffman and
Asiyah Yu Lin and
Darren A. Natale and
John Beverley and
Ling Zheng and
Yehoshua Perl and
Zhigang Wang and
Yingtong Liu and
Edison Ong and
Yang Wang and
Philip Huang and
Long Tran and
Jinyang Du and
Zalan Shah and
Easheta Shah and
Roshan Desai and
Hsin{-}Hui Huang and
Yujia Tian and
Eric Merrell and
William D. Duncan and
Sivaram Arabandi and
Lynn M. Schriml and
Jie Zheng and
Anna Maria Masci and
Liwei Wang and
Hongfang Liu and
Fatima Zohra Smaili and
Robert Hoehndorf and
Zo{\"{e}} May Pendlington and
Paola Roncaglia and
Xianwei Ye and
Jiangan Xie and
Yi{-}Wei Tang and
Xiaolin Yang and
Suyuan Peng and
Luxia Zhang and
Luonan Chen and
Junguk Hur and
Gilbert S. Omenn and
Brian D. Athey and
Barry Smith},
title = {A comprehensive update on {CIDO:} the community-based coronavirus
infectious disease ontology},
journal = {J. Biomed. Semant.},
volume = {13},
number = {1},
pages = {25},
year = {2022},
url = {https://doi.org/10.1186/s13326-022-00279-z},
doi = {10.1186/S13326-022-00279-Z},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/HeYHLNBZPWLOWHT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/fdgth/FuVIPPSMWFLS22,
author = {Sunyang Fu and
Maria Vassilaki and
Omar A. Ibrahim and
Ronald C. Petersen and
Sandeep R. Pagali and
Jennifer St Sauver and
Sungrim Moon and
Liwei Wang and
Jungwei Fan and
Hongfang Liu and
Sunghwan Sohn},
title = {Quality assessment of functional status documentation in EHRs across
different healthcare institutions},
journal = {Frontiers Digit. Health},
volume = {4},
year = {2022},
url = {https://doi.org/10.3389/fdgth.2022.958539},
doi = {10.3389/FDGTH.2022.958539},
timestamp = {Sat, 13 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/fdgth/FuVIPPSMWFLS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/FuTZLPLWLROSS22,
author = {Sunyang Fu and
Bjoerg Thorsteinsdottir and
Xin Zhang and
Guilherme S. Lopes and
Sandeep R. Pagali and
Nathan K. LeBrasseur and
Andrew Wen and
Hongfang Liu and
Walter A. Rocca and
Janet E. Olson and
Jennifer St. Sauver and
Sunghwan Sohn},
title = {A hybrid model to identify fall occurrence from electronic health
records},
journal = {Int. J. Medical Informatics},
volume = {162},
pages = {104736},
year = {2022},
url = {https://doi.org/10.1016/j.ijmedinf.2022.104736},
doi = {10.1016/J.IJMEDINF.2022.104736},
timestamp = {Wed, 18 May 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/FuTZLPLWLROSS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ZhouWWLZ22,
author = {Sicheng Zhou and
Nan Wang and
Liwei Wang and
Hongfang Liu and
Rui Zhang},
title = {CancerBERT: a cancer domain-specific language model for extracting
breast cancer phenotypes from electronic health records},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {7},
pages = {1208--1216},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac040},
doi = {10.1093/JAMIA/OCAC040},
timestamp = {Wed, 27 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ZhouWWLZ22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ThomasFZMPWHCGW22,
author = {Jason A. Thomas and
Randi E. Foraker and
Noa Zamstein and
Jon D. Morrow and
Philip R. O. Payne and
Adam B. Wilcox and
Melissa A. Haendel and
Christopher G. Chute and
Kenneth R. Gersing and
Anita Walden and
Tellen D. Bennett and
David A. Eichmann and
Justin Guinney and
Warren A. Kibbe and
Hongfang Liu and
Emily R. Pfaff and
Peter N. Robinson and
Joel H. Saltz and
Heidi Spratt and
Justin Starren and
Christine Suver and
Chunlei Wu and
Davera Gabriel and
Stephanie S. Hong and
Kristin Kostka and
Harold P. Lehmann and
Richard A. Moffitt and
Michele Morris and
Matvey B. Palchuk and
Xiaohan Tanner Zhang and
Richard L. Zhu and
Benjamin R. C. Amor and
Mark M. Bissell and
Marshall Clark and
Andrew T. Girvin and
Adam M. Lee and
Robert T. Miller and
Kellie M. Walters and
Yooree Chae and
Connor Cook and
Alexandra Dest and
Racquel R. Dietz and
Thomas Dillon and
Patricia A. Francis and
Rafael Fuentes and
Alexis Graves and
Andrew J. Neumann and
Shawn T. O'Neil and
Usman Sheikh and
Andr{\'{e}}a M. Volz and
Elizabeth Zampino and
Christopher P. Austin and
Samuel Bozzette and
Mariam Deacy and
Nicole Garbarini and
Michael G. Kurilla and
Sam G. Michael and
Joni L. Rutter and
Meredith Temple{-}O'Connor and
Katie Rebecca Bradwell and
Amin Manna and
Nabeel Qureshi and
Mary Morrison Saltz and
Julie A. McMurry and
Carolyn T. Bramante and
Jeremy Richard Harper and
Wenndy Hernandez and
Farrukh M. Koraishy and
Federico Mariona and
Saidulu Mattapally and
Amit Saha and
Satyanarayana Vedula and
Yujuan Fu and
Nisha Mathews and
Ofer Mendelevitch},
title = {Demonstrating an approach for evaluating synthetic geospatial and
temporal epidemiologic data utility: results from analyzing {\textgreater}1.8
million SARS-CoV-2 tests in the United States National {COVID} Cohort
Collaborative {(N3C)}},
journal = {J. Am. Medical Informatics Assoc.},
volume = {29},
number = {8},
pages = {1350--1365},
year = {2022},
url = {https://doi.org/10.1093/jamia/ocac045},
doi = {10.1093/JAMIA/OCAC045},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ThomasFZMPWHCGW22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/RuanFSMLL22,
author = {Xiaoyang Ruan and
Sunyang Fu and
Curtis B. Storlie and
Kellie L. Mathis and
David W. Larson and
Hongfang Liu},
title = {Real-time risk prediction of colorectal surgery-related post-surgical
complications using {GRU-D} model},
journal = {J. Biomed. Informatics},
volume = {135},
pages = {104202},
year = {2022},
url = {https://doi.org/10.1016/j.jbi.2022.104202},
doi = {10.1016/J.JBI.2022.104202},
timestamp = {Tue, 03 Jan 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/RuanFSMLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/ZongWMF0ZY0WZMC22,
author = {Nansu Zong and
Andrew Wen and
Sungrim Moon and
Sunyang Fu and
Liwei Wang and
Yiqing Zhao and
Yue Yu and
Ming Huang and
Yanshan Wang and
Gang Zheng and
Michelle M. Mielke and
James R. Cerhan and
Hongfang Liu},
title = {Computational drug repurposing based on electronic health records:
a scoping review},
journal = {npj Digit. Medicine},
volume = {5},
year = {2022},
url = {https://doi.org/10.1038/s41746-022-00617-6},
doi = {10.1038/S41746-022-00617-6},
timestamp = {Sun, 16 Apr 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/ZongWMF0ZY0WZMC22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/FuVIPSWFLS22,
author = {Sunyang Fu and
Maria Vassilaki and
Omar A. Ibrahim and
Ronald C. Petersen and
Jennifer St. Sauver and
Liwei Wang and
Jungwei Fan and
Hongfang Liu and
Sunghwan Sohn},
title = {Quality Assessment of Functional Status Documentation in {EHR} Across
Institutions},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/1027-1.4641482/736-1.4641479},
timestamp = {Wed, 17 Apr 2024 11:46:45 +0200},
biburl = {https://dblp.org/rec/conf/amia/FuVIPSWFLS22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HeFWWLMML22,
author = {Huan He and
Sunyang Fu and
Liwei Wang and
Andrew Wen and
Sijia Liu and
Sungrim Moon and
Kurt Miller and
Hongfang Liu},
title = {Towards User-centered Corpus Development: Lessons Learnt from Designing
and Developing MedTator},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f006-1.4642154/f006-1.4642155/871-1.4642387/613-1.4642384},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HeFWWLMML22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HeRNSAMLI22,
author = {Huan He and
Irbaz Bin Riaz and
Syed Arsalan Ahmed Naqvi and
Rabbia Siddiqi and
Noureen Asghar and
Mohammad Hassan Murad and
Hongfang Liu and
Mahnoor Islam},
title = {Real-time Exploration of Pairwise Meta-analysis Results by Applying
Serverless Architecture Design},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/387-1.4641422/1102-1.4641419},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HeRNSAMLI22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MillerHFAEPLHT22,
author = {Kurt Miller and
Ming Huang and
Sunyang Fu and
Kris Abah and
Andrea Maraboto Escarria and
Kevin J. Peterson and
Hongfang Liu and
Lacey Hart and
Nelly Tan},
title = {Probing Radiology Patient Experience Feedbacks with Aspect-based Sentiment
Analysis},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/241-1.4641131/1117-1.4641128},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MillerHFAEPLHT22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MoonWCWMLBL22,
author = {Sungrim Moon and
Liwei Wang and
Xuan Chen and
Nan Wang and
Sheila Manemann and
Nicholas B. Larson and
Suzette J. Bielinski and
Hongfang Liu},
title = {Bridging the Granularity Gap in Family History Information Extracted
from Clinical Narratives},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f006-1.4642154/f006-1.4642155/1110-1.4642303/727-1.4642300},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MoonWCWMLBL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MoonWCWMLBL22a,
author = {Sungrim Moon and
Liwei Wang and
Xuan Chen and
Nan Wang and
Sheila Manemann and
Nicholas B. Larson and
Suzette J. Bielinski and
Hongfang Liu},
title = {Mapping Family History Information from Clinical Narratives to Ontologies
or Terminological Resources},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/406-1.4641125/729-1.4641122},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MoonWCWMLBL22a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RiazHNSAIML22,
author = {Irbaz Bin Riaz and
Huan He and
Syed Arsalan Ahmed Naqvi and
Rabbia Siddiqi and
Noureen Asghar and
Mahnoor Islam and
Mohammad Hassan Murad and
Hongfang Liu},
title = {A Hybrid Approach to Semi-automate the Evaluation of the Certainty
of Evidence for Living Systematic Reviews and Meta-analysis},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f007-1.4641746/f007-1.4641747/625-1.4641886/1139-1.4641883},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RiazHNSAIML22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangMZHL22,
author = {Liwei Wang and
Sungrim Moon and
Sicheng Zhou and
Huan He and
Hongfang Liu},
title = {Annotation Enhancement of Synthetic Family History Corpus},
booktitle = {{AMIA} 2022, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 5-9, 2022},
publisher = {{AMIA}},
year = {2022},
url = {https://knowledge.amia.org/76677-amia-1.4637602/f008-1.4640715/f008-1.4640716/415-1.4640819/530-1.4640816},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangMZHL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/MoonHL22,
author = {Sungrim Moon and
Huan He and
Hongfang Liu},
editor = {Donald A. Adjeroh and
Qi Long and
Xinghua Mindy Shi and
Fei Guo and
Xiaohua Hu and
Srinivas Aluru and
Giri Narasimhan and
Jianxin Wang and
Mingon Kang and
Ananda Mondal and
Jin Liu},
title = {Sublanguage Characteristics of Clinical Documents},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2022, Las Vegas, NV, USA, December 6-8, 2022},
pages = {3280--3286},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/BIBM55620.2022.9995620},
doi = {10.1109/BIBM55620.2022.9995620},
timestamp = {Thu, 12 Jan 2023 09:26:28 +0100},
biburl = {https://dblp.org/rec/conf/bibm/MoonHL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/MillerFAEPLHTH22,
author = {Kurt Miller and
Sunyang Fu and
Kris Abah and
Andrea Maraboto Escarria and
Kevin J. Peterson and
Hongfang Liu and
Lacey Hart and
Nelly Tan and
Ming Huang},
title = {Aspect-based Sentiment Analysis of Radiology Patient Experience Surveys:
{A} Cohort Study},
booktitle = {10th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2022, Rochester, MN, USA, June 11-14, 2022},
pages = {90--96},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ICHI54592.2022.00025},
doi = {10.1109/ICHI54592.2022.00025},
timestamp = {Fri, 23 Sep 2022 17:15:39 +0200},
biburl = {https://dblp.org/rec/conf/ichi/MillerFAEPLHTH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/ZhouALH22,
author = {Jiawei Zhou and
Rosa I. Arriaga and
Hongfang Liu and
Ming Huang},
title = {A Tale of Two Perspectives: Harvesting System Views and User Views
to Understand Patient Portal Engagement},
booktitle = {10th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2022, Rochester, MN, USA, June 11-14, 2022},
pages = {373--383},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ICHI54592.2022.00059},
doi = {10.1109/ICHI54592.2022.00059},
timestamp = {Sun, 12 Nov 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/ZhouALH22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/OianFL22,
author = {Ray Oian and
Sunyang Fu and
Hongfang Liu},
title = {Evaluation of Document-Level Identification of Pulmonary Nodules in
Radiology Reports Using {FLAIR} Natural Language Processing Framework},
booktitle = {10th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2022, Rochester, MN, USA, June 11-14, 2022},
pages = {515--516},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ICHI54592.2022.00093},
doi = {10.1109/ICHI54592.2022.00093},
timestamp = {Fri, 23 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ichi/OianFL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WangFWRHLMMRWYX22,
author = {Liwei Wang and
Sunyang Fu and
Andrew Wen and
Xiaoyang Ruan and
Huan He and
Sijia Liu and
Sungrim Moon and
Michelle Mai and
Irbaz Bin Riaz and
Nan Wang and
Ping Yang and
Hua Xu and
Jeremy L. Warner and
Hongfang Liu},
title = {Evaluation of mCODE Coverage in {EHR:} a Scoping Review of Cancer
Natural Language Processing},
booktitle = {10th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2022, Rochester, MN, USA, June 11-14, 2022},
pages = {517--518},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ICHI54592.2022.00094},
doi = {10.1109/ICHI54592.2022.00094},
timestamp = {Wed, 08 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/WangFWRHLMMRWYX22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/HeFWWLL22,
author = {Huan He and
Sunyang Fu and
Liwei Wang and
Andrew Wen and
Sijia Liu and
Hongfang Liu},
title = {MedTator: {A} Serverless Web-based Tool for Corpus Annotation},
booktitle = {10th {IEEE} International Conference on Healthcare Informatics, {ICHI}
2022, Rochester, MN, USA, June 11-14, 2022},
pages = {530--531},
publisher = {{IEEE}},
year = {2022},
url = {https://doi.org/10.1109/ICHI54592.2022.00099},
doi = {10.1109/ICHI54592.2022.00099},
timestamp = {Fri, 23 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ichi/HeFWWLL22.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2201-02517,
author = {Sungrim Moon and
Huan He and
Hongfang Liu and
Jungwei Fan},
title = {RxWhyQA: a clinical question-answering dataset with the challenge
of multi-answer questions},
journal = {CoRR},
volume = {abs/2201.02517},
year = {2022},
url = {https://arxiv.org/abs/2201.02517},
eprinttype = {arXiv},
eprint = {2201.02517},
timestamp = {Mon, 10 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-2201-02517.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2206-14181,
author = {Yao Yan and
Thomas Yu and
Kathleen Muenzen and
Sijia Liu and
Connor Boyle and
George Koslowski and
Jiaxin Zheng and
Nicholas J. Dobbins and
Clement Essien and
Hongfang Liu and
Larsson Omberg and
Meliha Yestigen and
Bradley Taylor and
James A. Eddy and
Justin Guinney and
Sean D. Mooney and
Thomas Schaffter},
title = {The {NLP} Sandbox: an efficient model-to-data system to enable federated
and unbiased evaluation of clinical {NLP} models},
journal = {CoRR},
volume = {abs/2206.14181},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2206.14181},
doi = {10.48550/ARXIV.2206.14181},
eprinttype = {arXiv},
eprint = {2206.14181},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2206-14181.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-01941,
author = {Yifang Dang and
Fang Li and
Xinyue Hu and
Vipina Kuttichi Keloth and
Meng Zhang and
Sunyang Fu and
Jingcheng Du and
J. Wilfred Fan and
Muhammad F. Amith and
Evan Yu and
Hongfang Liu and
Xiaoqian Jiang and
Hua Xu and
Cui Tao},
title = {Systematic Design and Evaluation of Social Determinants of Health
Ontology (SDoHO)},
journal = {CoRR},
volume = {abs/2212.01941},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2212.01941},
doi = {10.48550/ARXIV.2212.01941},
eprinttype = {arXiv},
eprint = {2212.01941},
timestamp = {Wed, 30 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2212-01941.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2212-09606,
author = {Xiaoyang Ruan and
Liwei Wang and
Michelle Mai and
Charat Thongprayoon and
Wisit Cheungpasitporn and
Hongfang Liu},
title = {Discrimination, calibration, and point estimate accuracy of GRU-D-Weibull
architecture for real-time individualized endpoint prediction},
journal = {CoRR},
volume = {abs/2212.09606},
year = {2022},
url = {https://doi.org/10.48550/arXiv.2212.09606},
doi = {10.48550/ARXIV.2212.09606},
eprinttype = {arXiv},
eprint = {2212.09606},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2212-09606.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/ZongSSWWYHLLSJ21,
author = {Nansu Zong and
Daniel J. Stone and
Deepak K. Sharma and
Andrew Wen and
Chen Wang and
Yue Yu and
Ming Huang and
Sijia Liu and
Hongfang Liu and
Qian Shi and
Guoqian Jiang},
title = {Modeling cancer clinical trials using {HL7} {FHIR} to support downstream
applications: {A} case study with colorectal cancer data},
journal = {Int. J. Medical Informatics},
volume = {145},
pages = {104308},
year = {2021},
url = {https://doi.org/10.1016/j.ijmedinf.2020.104308},
doi = {10.1016/J.IJMEDINF.2020.104308},
timestamp = {Fri, 23 Sep 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/ZongSSWWYHLLSJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/PetersenSFGJKLM21,
author = {Carolyn Petersen and
Jeffery Smith and
Robert R. Freimuth and
Kenneth W. Goodman and
Gretchen Purcell Jackson and
Joseph L. Kannry and
Hongfang Liu and
Subha Madhavan and
Dean F. Sittig and
Adam Wright},
title = {Recommendations for the safe, effective use of adaptive {CDS} in the
{US} healthcare system: an {AMIA} position paper},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {4},
pages = {677--684},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocaa319},
doi = {10.1093/JAMIA/OCAA319},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/PetersenSFGJKLM21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiZJNPLX21,
author = {Jianfu Li and
Yujia Zhou and
Xiaoqian Jiang and
Karthik Natarajan and
Serguei V. S. Pakhomov and
Hongfang Liu and
Hua Xu},
title = {Are synthetic clinical notes useful for real natural language processing
tasks: {A} case study on clinical entity recognition},
journal = {J. Am. Medical Informatics Assoc.},
volume = {28},
number = {10},
pages = {2193--2201},
year = {2021},
url = {https://doi.org/10.1093/jamia/ocab112},
doi = {10.1093/JAMIA/OCAB112},
timestamp = {Tue, 25 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/LiZJNPLX21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WenWHLFSKKHWSFL21,
author = {Andrew Wen and
Liwei Wang and
Huan He and
Sijia Liu and
Sunyang Fu and
Sunghwan Sohn and
Jacob A. Kugel and
Vinod C. Kaggal and
Ming Huang and
Yanshan Wang and
Feichen Shen and
Jungwei Fan and
Hongfang Liu},
title = {An aberration detection-based approach for sentinel syndromic surveillance
of {COVID-19} and other novel influenza-like illnesses},
journal = {J. Biomed. Informatics},
volume = {113},
pages = {103660},
year = {2021},
url = {https://doi.org/10.1016/j.jbi.2020.103660},
doi = {10.1016/J.JBI.2020.103660},
timestamp = {Tue, 01 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/WenWHLFSKKHWSFL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ZhaoWGLW21,
author = {Yiqing Zhao and
Saravut J. Weroha and
Ellen L. Goode and
Hongfang Liu and
Chen Wang},
title = {Generating real-world evidence from unstructured clinical notes to
examine clinical utility of genetic tests: use case in BRCAness},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {21},
number = {1},
pages = {3},
year = {2021},
url = {https://doi.org/10.1186/s12911-020-01364-y},
doi = {10.1186/S12911-020-01364-Y},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ZhaoWGLW21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/YoonBWHSKRSLJ21,
author = {Jungwon Yoon and
Heather Billings and
Chung{-}Il Wi and
Elissa Hall and
Sunghwan Sohn and
Jung Hyun Kwon and
Euijung Ryu and
Pragya Shrestha and
Hongfang Liu and
Young J. Juhn},
title = {Establishing an expert consensus for the operational definitions of
asthma-associated infectious and inflammatory multimorbidities for
computational algorithms through a modified Delphi technique},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {21},
number = {1},
pages = {310},
year = {2021},
url = {https://doi.org/10.1186/s12911-021-01663-y},
doi = {10.1186/S12911-021-01663-Y},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/YoonBWHSKRSLJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/0002NCLJZ21,
author = {Chao Jiang and
Victoria Ngo and
Richard Chapman and
Hongfang Liu and
Guoqian Jiang and
Nansu Zong},
title = {Automatic Construction of Biomedical Knowledge Graph from Covid-19
Literature},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t005-1.4625076/t005-1.4625077/3577212-1.4625678/3632450-1.4625675},
timestamp = {Thu, 18 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/0002NCLJZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/0006KMWH00WPCST21,
author = {Ming Huang and
Aditya Khurana and
George M. Mastorakos and
Andrew Wen and
Huan He and
Liwei Wang and
Sijia Liu and
Yanshan Wang and
Julie E. Prigge and
Brian Costello and
Nilay D. Shah and
Henry Ting and
Christi A. Patten and
Jungwei Fan and
Hongfang Liu},
title = {Patient Asynchronous Response to Coronavirus Disease 2019 {(COVID-19):}
{A} Retrospective Analysis of Patient Portal Messages},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t004-1.4626008/t004-1.4626009/3577120-1.4626301/3577618-1.4626298},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/0006KMWH00WPCST21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Estiri0LTL21,
author = {Hossein Estiri and
Yuan Luo and
Hongfang Liu and
Suzanne Tamang and
Harold P. Lehmann},
title = {Addressing Bias in the Application of Machine Learning on Real-World
Data},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t002-1.4626813/t002-1.4626814/3577386-1.4626938/3577531-1.4626935},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Estiri0LTL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HeRNSAML21,
author = {Huan He and
Irbaz Bin Riaz and
Syed Arsalan Ahmed Naqvi and
Rabbia Siddiqi and
Noureen Asghar and
Mohammad Hassan Murad and
Hongfang Liu},
title = {A Hybrid Approach to Semi-Automate the Screening Process for Living
Systematic Reviews and Meta-Analysis},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t004-1.4626008/t004-1.4626009/3577260-1.4626313/3577534-1.4626310},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HeRNSAML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HeWWHWL21,
author = {Huan He and
Liwei Wang and
Andrew Wen and
Ming Huang and
Yanshan Wang and
Hongfang Liu},
title = {{COVID-19} Dashboard: Visual Exploration of the Regional Pandemic
Trend},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t005-1.4625076/t005-1.4625077/3577565-1.4625729/3577516-1.4625726},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HeWWHWL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HuangWHW0WZYPCS21,
author = {Ming Huang and
Andrew Wen and
Huan He and
Liwei Wang and
Sijia Liu and
Yanshan Wang and
Nansu Zong and
Yue Yu and
Julie E. Prigge and
Brian Costello and
Nilay D. Shah and
Henry Ting and
Chyke Doubeni and
Jungwei Fan and
Hongfang Liu and
Christi A. Patten},
title = {Disparity analysis of patient portal messaging use for {COVID-19}
in urban versus rural locality},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t005-1.4625076/t005-1.4625077/3577398-1.4625693/3577652-1.4625690},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HuangWHW0WZYPCS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RiazHNSAML21,
author = {Irbaz Bin Riaz and
Huan He and
Syed Arsalan Ahmed Naqvi and
Rabbia Siddiqi and
Noureen Asghar and
Mohammad Hassan Murad and
Hongfang Liu},
title = {An Interactive Data Extraction System to Create the Living Systematic
Reviews and Meta-Analysis},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t005-1.4625076/t005-1.4625077/3576920-1.4625345/3577615-1.4625342},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RiazHNSAML21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/StoneLLWZRABPWT21,
author = {Daniel J. Stone and
Sijia Liu and
Yuan Luo and
Andrew Wen and
Nansu Zong and
Luke V. Rasmussen and
Prakash Adekkanattu and
Pascal S. Brandt and
Jennifer A. Pacheco and
Fei Wang and
Cui Tao and
Jyotishman Pathak and
Hongfang Liu and
Guoqian Jiang},
title = {FHIRTime: Standardizing Temporal Patterns Identified from Clinical
Narratives Using {HL7} {FHIR}},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t004-1.4626008/t004-1.4626009/3577460-1.4626100/3576929-1.4626097},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/StoneLLWZRABPWT21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WenRSLABPLWPLJ21,
author = {Andrew Wen and
Luke V. Rasmussen and
Daniel J. Stone and
Sijia Liu and
Prakash Adekkanattu and
Pascal S. Brandt and
Jennifer A. Pacheco and
Yuan Luo and
Fei Wang and
Jyotishman Pathak and
Hongfang Liu and
Guoqian Jiang},
title = {On Constraints and Considerations for Extending Support for Natural
Language Processing-Based {FHIR} Resource Generation},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t004-1.4626008/t004-1.4626009/3577530-1.4626058/3577467-1.4626055},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WenRSLABPLWPLJ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZhaoBLF21,
author = {Yiqing Zhao and
Matthew Brush and
Hongfang Liu and
Robert R. Freimuth},
title = {Modeling Variant Annotation {(VA)} Therapeutic Association Statements
using a SEPIO-Based Workflow},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t004-1.4626008/t004-1.4626009/3632616-1.4626019/3577020-1.4626016},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZhaoBLF21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZhouWWFSBLZ21,
author = {Sicheng Zhou and
Liwei Wang and
Nan Wang and
Sunyang Fu and
Chetan Shenoy and
Anne H. Blaes and
Hongfang Liu and
Rui Zhang},
title = {Deep Learning Approaches for Breast Cancer Characteristics Extraction
from Electronic Health Records},
booktitle = {{AMIA} 2021, American Medical Informatics Association Annual Symposium,
San Diego, CA, USA, October 30, 2021 - November 3, 2021},
publisher = {{AMIA}},
year = {2021},
url = {https://knowledge.amia.org/74229-amia-1.4622266/t005-1.4625076/t005-1.4625077/3577638-1.4625087/3577140-1.4625084},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZhouWWFSBLZ21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/FuWPZSSFL21,
author = {Sunyang Fu and
Andrew Wen and
Sandeep R. Pagali and
Nansu Zong and
Jennifer St Sauver and
Sunghwan Sohn and
Jungwei Fan and
Hongfang Liu},
editor = {Paula Otero and
Philip Scott and
Susan Z. Martin and
Elaine Huesing},
title = {The Implication of Latent Information Quality to the Reproducibility
of Secondary Use of Electronic Health Records},
booktitle = {{MEDINFO} 2021: One World, One Health - Global Partnership for Digital
Innovation - Proceedings of the 18th World Congress on Medical and
Health Informatics, Virtual Event, 2-4 October 2021},
series = {Studies in Health Technology and Informatics},
volume = {290},
pages = {173--177},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI220055},
doi = {10.3233/SHTI220055},
timestamp = {Wed, 15 Jun 2022 15:51:15 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/FuWPZSSFL21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/Guo0MLS21,
author = {Yanbo Guo and
Chen Wang and
Raymond M. Moore and
Hongfang Liu and
Feichen Shen},
editor = {Paula Otero and
Philip Scott and
Susan Z. Martin and
Elaine Huesing},
title = {{POKR:} Building a Computable Heterogeneous Knowledge Resource for
Precision Oncology},
booktitle = {{MEDINFO} 2021: One World, One Health - Global Partnership for Digital
Innovation - Proceedings of the 18th World Congress on Medical and
Health Informatics, Virtual Event, 2-4 October 2021},
series = {Studies in Health Technology and Informatics},
volume = {290},
pages = {243--247},
publisher = {{IOS} Press},
year = {2021},
url = {https://doi.org/10.3233/SHTI220071},
doi = {10.3233/SHTI220071},
timestamp = {Wed, 15 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/Guo0MLS21.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ijcai/2021ai4function,
editor = {Denis Newman{-}Griffis and
Bart Desmet and
Ayah Zirikly and
Suzanne Tamang and
Hongfang Liu},
title = {Proceedings of the Second Workshop on Artificial Intelligence for
Function, Disability, and Health co-located with the 2021 International
Joint Conference on Artificial Intelligence, AI4Function@IJCAI 2021,
Online, August 20-21, 2021},
series = {{CEUR} Workshop Proceedings},
volume = {2926},
publisher = {CEUR-WS.org},
year = {2021},
url = {https://ceur-ws.org/Vol-2926},
urn = {urn:nbn:de:0074-2926-7},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcai/2021ai4function.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2101-05866,
author = {David Oniani and
Chen Wang and
Yiqing Zhao and
Andrew Wen and
Hongfang Liu and
Feichen Shen},
title = {Comparisons of Graph Neural Networks on Cancer Classification Leveraging
a Joint of Phenotypic and Genetic Features},
journal = {CoRR},
volume = {abs/2101.05866},
year = {2021},
url = {https://arxiv.org/abs/2101.05866},
eprinttype = {arXiv},
eprint = {2101.05866},
timestamp = {Wed, 15 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2101-05866.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2103-16316,
author = {David Oniani and
Chen Wang and
Yiqing Zhao and
Andrew Wen and
Hongfang Liu and
Feichen Shen},
title = {Leveraging a Joint of Phenotypic and Genetic Features on Cancer Patient
Subgrouping},
journal = {CoRR},
volume = {abs/2103.16316},
year = {2021},
url = {https://arxiv.org/abs/2103.16316},
eprinttype = {arXiv},
eprint = {2103.16316},
timestamp = {Wed, 15 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2103-16316.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2108-02255,
author = {Greg M. Silverman and
Raymond L. Finzel and
Michael V. Heinz and
Jake Vasilakes and
Jacob C. Solinsky and
Reed McEwan and
Benjamin C. Knoll and
Christopher J. Tignanelli and
Hongfang Liu and
Hua Xu and
Xiaoqian Jiang and
Genevieve B. Melton and
Serguei V. S. Pakhomov},
title = {An Empirical Study of {UMLS} Concept Extraction from Clinical Notes
using Boolean Combination Ensembles},
journal = {CoRR},
volume = {abs/2108.02255},
year = {2021},
url = {https://arxiv.org/abs/2108.02255},
eprinttype = {arXiv},
eprint = {2108.02255},
timestamp = {Wed, 11 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2108-02255.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2108-11303,
author = {Sicheng Zhou and
Liwei Wang and
Nan Wang and
Hongfang Liu and
Rui Zhang},
title = {CancerBERT: a {BERT} model for Extracting Breast Cancer Phenotypes
from Electronic Health Records},
journal = {CoRR},
volume = {abs/2108.11303},
year = {2021},
url = {https://arxiv.org/abs/2108.11303},
eprinttype = {arXiv},
eprint = {2108.11303},
timestamp = {Wed, 06 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2108-11303.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-2110-10780,
author = {Sijia Liu and
Andrew Wen and
Liwei Wang and
Huan He and
Sunyang Fu and
Robert T. Miller and
Andrew E. Williams and
Daniel R. Harris and
Ramakanth Kavuluru and
Mei Liu and
Noor Abu{-}El{-}Rub and
Rui Zhang and
John D. Osborne and
Masoud Rouhizadeh and
Yongqun He and
Emily R. Pfaff and
Christopher G. Chute and
Tim Duong and
Melissa A. Haendel and
Rafael Fuentes and
Peter Szolovits and
Hua Xu and
Hongfang Liu},
title = {An Open Natural Language Processing Development Framework for EHR-based
Clinical Research: {A} case demonstration using the National {COVID}
Cohort Collaborative {(N3C)}},
journal = {CoRR},
volume = {abs/2110.10780},
year = {2021},
url = {https://arxiv.org/abs/2110.10780},
eprinttype = {arXiv},
eprint = {2110.10780},
timestamp = {Wed, 13 Jul 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-2110-10780.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijseke/WangCWPL20,
author = {Haitao Wang and
Yanli Chen and
Juan Wang and
Hao Peng and
Hongfang Liu},
title = {Mutual Inference Model for User Roles and Urban Functional Zones},
journal = {Int. J. Softw. Eng. Knowl. Eng.},
volume = {30},
number = {4},
pages = {503--521},
year = {2020},
url = {https://doi.org/10.1142/s0218194020400021},
doi = {10.1142/S0218194020400021},
timestamp = {Mon, 28 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijseke/WangCWPL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/KronzerWLDSC20,
author = {Vanessa L. Kronzer and
Liwei Wang and
Hongfang Liu and
John M. Davis III and
Jeffrey A. Sparks and
Cynthia S. Crowson},
title = {Investigating the impact of disease and health record duration on
the eMERGE algorithm for rheumatoid arthritis},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {4},
pages = {601--605},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa014},
doi = {10.1093/JAMIA/OCAA014},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/KronzerWLDSC20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiDHSMRXLCLWL0T20,
author = {Fang Li and
Jingcheng Du and
Yongqun He and
Hsing{-}yi Song and
Mohcine Madkour and
Guozheng Rao and
Yang Xiang and
Yi Luo and
Henry W. Chen and
Sijia Liu and
Liwei Wang and
Hongfang Liu and
Hua Xu and
Cui Tao},
title = {Time event ontology {(TEO):} to support semantic representation and
reasoning of complex temporal relations of clinical events},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {7},
pages = {1046--1056},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa058},
doi = {10.1093/JAMIA/OCAA058},
timestamp = {Wed, 08 Sep 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LiDHSMRXLCLWL0T20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/OnianiJLS20,
author = {David Oniani and
Guoqian Jiang and
Hongfang Liu and
Feichen Shen},
title = {Constructing co-occurrence network embeddings to assist association
extraction for {COVID-19} and other coronavirus infectious diseases},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {8},
pages = {1259--1267},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa117},
doi = {10.1093/JAMIA/OCAA117},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/OnianiJLS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/DongLSBDHLLMNOP20,
author = {Xiao Dong and
Jianfu Li and
Ekin Soysal and
Jiang Bian and
Scott L. DuVall and
Elizabeth Hanchrow and
Hongfang Liu and
Kristine E. Lynch and
Michael E. Matheny and
Karthik Natarajan and
Lucila Ohno{-}Machado and
Serguei Pakhomov and
Ruth Madeleine Reeves and
Amy M. Sitapati and
Swapna Abhyankar and
Theresa Cullen and
Jami Deckard and
Xiaoqian Jiang and
Robert Murphy and
Hua Xu},
title = {{COVID-19} TestNorm: {A} tool to normalize {COVID-19} testing names
to {LOINC} codes},
journal = {J. Am. Medical Informatics Assoc.},
volume = {27},
number = {9},
pages = {1437--1442},
year = {2020},
url = {https://doi.org/10.1093/jamia/ocaa145},
doi = {10.1093/JAMIA/OCAA145},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/DongLSBDHLLMNOP20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WangZTATZALKL20,
author = {Yanshan Wang and
Yiqing Zhao and
Terry M. Therneau and
Elizabeth J. Atkinson and
Ahmad P. Tafti and
Nan Zhang and
Shreyasee Amin and
Andrew H. Limper and
Sundeep Khosla and
Hongfang Liu},
title = {Unsupervised machine learning for the discovery of latent disease
clusters and patient subgroups using electronic health records},
journal = {J. Biomed. Informatics},
volume = {102},
pages = {103364},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2019.103364},
doi = {10.1016/J.JBI.2019.103364},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WangZTATZALKL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/FuCHLMPSWWWZSL20,
author = {Sunyang Fu and
David Chen and
Huan He and
Sijia Liu and
Sungrim Moon and
Kevin J. Peterson and
Feichen Shen and
Liwei Wang and
Yanshan Wang and
Andrew Wen and
Yiqing Zhao and
Sunghwan Sohn and
Hongfang Liu},
title = {Clinical concept extraction: {A} methodology review},
journal = {J. Biomed. Informatics},
volume = {109},
pages = {103526},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2020.103526},
doi = {10.1016/J.JBI.2020.103526},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/FuCHLMPSWWWZSL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/PetersonJL20,
author = {Kevin J. Peterson and
Guoqian Jiang and
Hongfang Liu},
title = {A corpus-driven standardization framework for encoding clinical problems
with {HL7} {FHIR}},
journal = {J. Biomed. Informatics},
volume = {110},
pages = {103541},
year = {2020},
url = {https://doi.org/10.1016/j.jbi.2020.103541},
doi = {10.1016/J.JBI.2020.103541},
timestamp = {Fri, 25 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/PetersonJL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/lre/WangAFWSRL20,
author = {Yanshan Wang and
Naveed Afzal and
Sunyang Fu and
Liwei Wang and
Feichen Shen and
Majid Rastegar{-}Mojarad and
Hongfang Liu},
title = {MedSTS: a resource for clinical semantic textual similarity},
journal = {Lang. Resour. Evaluation},
volume = {54},
number = {1},
pages = {57--72},
year = {2020},
url = {https://doi.org/10.1007/s10579-018-9431-1},
doi = {10.1007/S10579-018-9431-1},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/lre/WangAFWSRL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/FuLRKKNCLKKL20,
author = {Sunyang Fu and
Lester Y. Leung and
Anne{-}Olivia Raulli and
David F. Kallmes and
Kristin A. Kinsman and
Kristoff B. Nelson and
Michael S. Clark and
Patrick H. Luetmer and
Paul R. Kingsbury and
David M. Kent and
Hongfang Liu},
title = {Assessment of the impact of {EHR} heterogeneity for clinical research
through a case study of silent brain infarction},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {20},
number = {1},
pages = {60},
year = {2020},
url = {https://doi.org/10.1186/s12911-020-1072-9},
doi = {10.1186/S12911-020-1072-9},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/FuLRKKNCLKKL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/0002FMWL20,
author = {Sijia Liu and
Sunyang Fu and
Sungrim Moon and
Andrew Wen and
Hongfang Liu},
title = {Predicting Section Location of Clinical Sentences using {BERT} Encoder
- {A} Pilot Study},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t005-1.4604904/t005-1.4604905/3417221-1.4605404/3416786-1.4605401},
timestamp = {Wed, 17 Apr 2024 11:47:01 +0200},
biburl = {https://dblp.org/rec/conf/amia/0002FMWL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/CarlsonJFHMWHSL20,
author = {Luke A. Carlson and
Molly M. Jeffery and
Sunyang Fu and
Huan He and
Rozalina G. McCoy and
Yanshan Wang and
W. M. Hooten and
Jennifer L. St. Sauver and
Hongfang Liu and
Jungwei Fan},
title = {Annotating Chronic Pain Episodes in {EHR} Text: Guideline Development
and Corpus Analysis},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3410998-1.4606171/3414198-1.4606168},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/CarlsonJFHMWHSL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/CarlsonSFTFJMLW20,
author = {Luke A. Carlson and
Jennifer St. Sauver and
Sunyang Fu and
Ahmad P. Tafti and
Jungwei Fan and
Molly M. Jeffery and
Rozalina G. McCoy and
Hongfang Liu and
Yanshan Wang},
title = {Big Impact from Small Data: Unsupervised Machine Learning Approaches
for Chronic Pain Patient Subgrouping},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t005-1.4604904/t005-1.4604905/3411286-1.4605743/3410005-1.4605740},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/CarlsonSFTFJMLW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HeSLL20,
author = {Huan He and
Feichen Shen and
Michael Lin and
Hongfang Liu},
title = {Identifying Rare Disease Studies by Natural Language Processing},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t005-1.4604904/t005-1.4604905/3410630-1.4605536/3416638-1.4605533},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HeSLL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuJPW020,
author = {Hongfang Liu and
Xiaoqian Jiang and
Serguei V. S. Pakhomov and
Chunhua Weng and
Hua Xu},
title = {The Open Health Natural Language Processing Collaboratory},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t002-1.4606605/t002-1.4606606/3417888-1.4606670/3410232-1.4606667},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuJPW020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RiazHZSHVMBML20,
author = {Irbaz Bin Riaz and
Huan He and
Yiqing Zhao and
Rabbia Siddiqi and
Vitaly Herasevich and
Per Olav Vandvik and
Victor Montori and
Allan Bryce and
Mohammad Hassan Murad and
Hongfang Liu},
title = {A Living Network Meta-Analysis of First Line Treatment of Metastatic
Kidney Cancer},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t005-1.4604904/t005-1.4604905/3416966-1.4605215/3417148-1.4605212},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RiazHZSHVMBML20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SaghebYWSRPYLJS20,
author = {Elham Sagheb and
Jungwon Yoon and
Chung{-}Il Wi and
Pragya Shrestha and
Euijung Ryu and
Miguel Park and
Barbara P. Yawn and
Hongfang Liu and
Young J. Juhn and
Sunghwan Sohn},
title = {Assessing Clinician's Adherence to Asthma Guidelines for Asthma Control
Status using Natural Language Processing in a Primary Care Setting},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t005-1.4604904/t005-1.4604905/3409768-1.4605185/3414887-1.4605182},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SaghebYWSRPYLJS20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WenFSL20,
author = {Andrew Wen and
Sunyang Fu and
Feichen Shen and
Hongfang Liu},
title = {Accelerating Development of Learning Healthcare Systems via Distantly
Supervised Knowledge Discovery},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3405622-1.4605892/3416920-1.4605889},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WenFSL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZhaoYCSFLW20,
author = {Yiqing Zhao and
Hanzhong Yu and
Luke A. Carlson and
Feichen Shen and
Sunyang Fu and
Hongfang Liu and
Chen Wang},
title = {Extracting Patient Genetic Information from Unstructured Clinical
Notes},
booktitle = {{AMIA} 2020, American Medical Informatics Association Annual Symposium,
Virtual Event, USA, November 14-18, 2020},
publisher = {{AMIA}},
year = {2020},
url = {https://knowledge.amia.org/72332-amia-1.4602255/t004-1.4605866/t004-1.4605867/3411187-1.4605871/3414884-1.4605868},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZhaoYCSFLW20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/ShenWL20,
author = {Feichen Shen and
Andrew Wen and
Hongfang Liu},
editor = {Alba Garc{\'{\i}}a Seco de Herrera and
Alejandro Rodr{\'{\i}}guez Gonz{\'{a}}lez and
KC Santosh and
Zelalem Temesgen and
Bridget Kane and
Paolo Soda},
title = {Enrich Rare Disease Phenotypic Characterizations via a Graph Convolutional
Network Based Recommendation System},
booktitle = {33rd {IEEE} International Symposium on Computer-Based Medical Systems,
{CBMS} 2020, Rochester, MN, USA, July 28-30, 2020},
pages = {37--40},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/CBMS49503.2020.00015},
doi = {10.1109/CBMS49503.2020.00015},
timestamp = {Mon, 16 Jan 2023 08:52:16 +0100},
biburl = {https://dblp.org/rec/conf/cbms/ShenWL20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/ShenWL20a,
author = {Feichen Shen and
Andrew Wen and
Hongfang Liu},
editor = {Alba Garc{\'{\i}}a Seco de Herrera and
Alejandro Rodr{\'{\i}}guez Gonz{\'{a}}lez and
KC Santosh and
Zelalem Temesgen and
Bridget Kane and
Paolo Soda},
title = {Subgrouping Rare Disease Patients Leveraging the Human Phenotype Ontology
Embeddings},
booktitle = {33rd {IEEE} International Symposium on Computer-Based Medical Systems,
{CBMS} 2020, Rochester, MN, USA, July 28-30, 2020},
pages = {169--172},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/CBMS49503.2020.00039},
doi = {10.1109/CBMS49503.2020.00039},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cbms/ShenWL20a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cbms/WenSMLF20,
author = {Andrew Wen and
Feichen Shen and
Sungrim Moon and
Hongfang Liu and
Jungwei Fan},
editor = {Alba Garc{\'{\i}}a Seco de Herrera and
Alejandro Rodr{\'{\i}}guez Gonz{\'{a}}lez and
KC Santosh and
Zelalem Temesgen and
Bridget Kane and
Paolo Soda},
title = {A Deep Profiling and Visualization Framework to Audit Clinical Assessment
Variation},
booktitle = {33rd {IEEE} International Symposium on Computer-Based Medical Systems,
{CBMS} 2020, Rochester, MN, USA, July 28-30, 2020},
pages = {546--551},
publisher = {{IEEE}},
year = {2020},
url = {https://doi.org/10.1109/CBMS49503.2020.00109},
doi = {10.1109/CBMS49503.2020.00109},
timestamp = {Thu, 10 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cbms/WenSMLF20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/isvc/YanRSFSLLKCTKT20,
author = {Shi Yan and
Taghi Ramazanian and
Elham Sagheb and
Sunyang Fu and
Sunghwan Sohn and
David G. Lewallen and
Hongfang Liu and
Walter K. Kremers and
Vipin Chaudhary and
Michael J. Taunton and
Hilal Maradit Kremers and
Ahmad P. Tafti},
editor = {George Bebis and
Zhaozheng Yin and
Edward Kim and
Jan Bender and
Kartic Subr and
Bum Chul Kwon and
Jian Zhao and
Denis Kalkofen and
George Baciu},
title = {DeepTKAClassifier: Brand Classification of Total Knee Arthroplasty
Implants Using Explainable Deep Convolutional Neural Networks},
booktitle = {Advances in Visual Computing - 15th International Symposium, {ISVC}
2020, San Diego, CA, USA, October 5-7, 2020, Proceedings, Part {II}},
series = {Lecture Notes in Computer Science},
volume = {12510},
pages = {154--165},
publisher = {Springer},
year = {2020},
url = {https://doi.org/10.1007/978-3-030-64559-5\_12},
doi = {10.1007/978-3-030-64559-5\_12},
timestamp = {Fri, 01 Dec 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/isvc/YanRSFSLLKCTKT20.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/wsdm/ChamberlinBCWW020,
author = {Steve Chamberlin and
Steven Bedrick and
Aaron M. Cohen and
Yanshan Wang and
Andrew Wen and
Sijia Liu and
Hongfang Liu and
William R. Hersh},
editor = {Carsten Eickhoff and
Yubin Kim and
Ryen W. White},
title = {A Query Taxonomy Describes Performance of Patient-Level Retrieval
from Electronic Health Record Data},
booktitle = {Proceedings of the {ACM} {WSDM} 2020 Health Search and Data Mining
Workshop, co-located with the 13th {ACM} International {WSDM} Conference,
HSDM@WSDM 2020, Houston, TX, USA, February 3, 2020},
series = {{CEUR} Workshop Proceedings},
volume = {2551},
pages = {27--33},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2551/paper-06.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:20 +0100},
biburl = {https://dblp.org/rec/conf/wsdm/ChamberlinBCWW020.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/ijcai/2020ai4function,
editor = {Denis Newman{-}Griffis and
Serguei V. S. Pakhomov and
Suzanne Tamang and
Ayah Zirikly and
Bart Desmet and
Hongfang Liu and
Junichi Tsujii},
title = {Proceedings of the First Workshop on Artificial Intelligence for Function,
Disability, and Health co-located with the 2020 International Joint
Conference on Artificial Intelligence - Pacific Rim Conference on
Artificial Intelligence {(IJCAI-PRICAI} 2020), Online, January 7-8,
2021},
series = {{CEUR} Workshop Proceedings},
volume = {2760},
publisher = {CEUR-WS.org},
year = {2020},
url = {https://ceur-ws.org/Vol-2760},
urn = {urn:nbn:de:0074-2760-6},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcai/2020ai4function.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/DoganKCWCAMCEPV19,
author = {Rezarta Islamaj Dogan and
Sun Kim and
Andrew Chatr{-}aryamontri and
Chih{-}Hsuan Wei and
Donald C. Comeau and
Rui Antunes and
S{\'{e}}rgio Matos and
Qingyu Chen and
Aparna Elangovan and
Nagesh C. Panyam and
Karin Verspoor and
Hongfang Liu and
Yanshan Wang and
Zhuang Liu and
Berna Altinel and
Zehra Melce H{\"{u}}s{\"{u}}nbeyi and
Arzucan {\"{O}}zg{\"{u}}r and
Aris Fergadis and
Chen{-}Kai Wang and
Hong{-}Jie Dai and
Tung Tran and
Ramakanth Kavuluru and
Ling Luo and
Albert Steppi and
Jinfeng Zhang and
Jinchan Qu and
Zhiyong Lu},
title = {Overview of the BioCreative {VI} Precision Medicine Track: mining
protein interactions and mutations for precision medicine},
journal = {Database J. Biol. Databases Curation},
volume = {2019},
pages = {bay147},
year = {2019},
url = {https://doi.org/10.1093/database/bay147},
doi = {10.1093/DATABASE/BAY147},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/DoganKCWCAMCEPV19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/MoonLSSAGNSCONL19,
author = {Sungrim Moon and
Sijia Liu and
Christopher Scott and
Sujith Samudrala and
Mohamed M. Abidian and
Jeffrey B. Geske and
Peter A. Noseworthy and
Jane L. Shellum and
Rajeev Chaudhry and
Steve Ommen and
Rick Nishimura and
Hongfang Liu and
Adelaide M. Arruda{-}Olson},
title = {Automated extraction of sudden cardiac death risk factors in hypertrophic
cardiomyopathy patients by natural language processing},
journal = {Int. J. Medical Informatics},
volume = {128},
pages = {32--38},
year = {2019},
url = {https://doi.org/10.1016/j.ijmedinf.2019.05.008},
doi = {10.1016/J.IJMEDINF.2019.05.008},
timestamp = {Tue, 11 May 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/MoonLSSAGNSCONL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/ZhouWSTLK19,
author = {Xin Zhou and
Yanshan Wang and
Sunghwan Sohn and
Terry M. Therneau and
Hongfang Liu and
David S. Knopman},
title = {Automatic extraction and assessment of lifestyle exposures for Alzheimer's
disease using natural language processing},
journal = {Int. J. Medical Informatics},
volume = {130},
year = {2019},
url = {https://doi.org/10.1016/j.ijmedinf.2019.08.003},
doi = {10.1016/J.IJMEDINF.2019.08.003},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijmi/ZhouWSTLK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ShenPFWLWWL19,
author = {Feichen Shen and
Suyuan Peng and
Yadan Fan and
Andrew Wen and
Sijia Liu and
Yanshan Wang and
Liwei Wang and
Hongfang Liu},
title = {HPO2Vec+: Leveraging heterogeneous knowledge resources to enrich node
embeddings for the Human Phenotype Ontology},
journal = {J. Biomed. Informatics},
volume = {96},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103246},
doi = {10.1016/J.JBI.2019.103246},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/ShenPFWLWWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HongWSTKRPAWLPL19,
author = {Na Hong and
Andrew Wen and
Daniel J. Stone and
Shintaro Tsuji and
Paul R. Kingsbury and
Luke V. Rasmussen and
Jennifer A. Pacheco and
Prakash Adekkanattu and
Fei Wang and
Yuan Luo and
Jyotishman Pathak and
Hongfang Liu and
Guoqian Jiang},
title = {Developing a FHIR-based {EHR} phenotyping framework: {A} case study
for identification of patients with obesity and multiple comorbidities
from discharge summaries},
journal = {J. Biomed. Informatics},
volume = {99},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103310},
doi = {10.1016/J.JBI.2019.103310},
timestamp = {Tue, 11 Jan 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HongWSTKRPAWLPL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LiuTRLLBSKWSLEF19,
author = {Cong Liu and
Casey N. Ta and
James R. Rogers and
Ziran Li and
Junghwan Lee and
Alex M. Butler and
Ning Shang and
Fabricio Sampaio Peres Kury and
Liwei Wang and
Feichen Shen and
Hongfang Liu and
Lyudmila Ena and
Carol Friedman and
Chunhua Weng},
title = {Ensembles of natural language processing systems for portable phenotyping
solutions},
journal = {J. Biomed. Informatics},
volume = {100},
year = {2019},
url = {https://doi.org/10.1016/j.jbi.2019.103318},
doi = {10.1016/J.JBI.2019.103318},
timestamp = {Tue, 21 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LiuTRLLBSKWSLEF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jhir/ShenCLNL19,
author = {Feichen Shen and
Vipin Chaudhary and
Yan Liu and
Che Ngufor and
Hongfang Liu},
title = {Special Issue on Healthcare Knowledge Discovery and Management},
journal = {J. Heal. Informatics Res.},
volume = {3},
number = {2},
pages = {157--158},
year = {2019},
url = {https://doi.org/10.1007/s41666-019-00054-3},
doi = {10.1007/S41666-019-00054-3},
timestamp = {Thu, 21 Jan 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jhir/ShenCLNL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jhir/MoonLCWWCLK19,
author = {Sungrim Moon and
Sijia Liu and
David Chen and
Yanshan Wang and
Douglas L. Wood and
Rajeev Chaudhry and
Hongfang Liu and
Paul R. Kingsbury},
title = {Salience of Medical Concepts of Inside Clinical Texts and Outside
Medical Records for Referred Cardiovascular Patients},
journal = {J. Heal. Informatics Res.},
volume = {3},
number = {2},
pages = {200--219},
year = {2019},
url = {https://doi.org/10.1007/s41666-019-00044-5},
doi = {10.1007/S41666-019-00044-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jhir/MoonLCWWCLK19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jhir/ShenLNHLS19,
author = {Feichen Shen and
David W. Larson and
James M. Naessens and
Elizabeth B. Habermann and
Hongfang Liu and
Sunghwan Sohn},
title = {Detection of Surgical Site Infection Utilizing Automated Feature Generation
in Clinical Notes},
journal = {J. Heal. Informatics Res.},
volume = {3},
number = {3},
pages = {267--282},
year = {2019},
url = {https://doi.org/10.1007/s41666-018-0042-9},
doi = {10.1007/S41666-018-0042-9},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jhir/ShenLNHLS19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/WangSLSWAAL19,
author = {Yanshan Wang and
Sunghwan Sohn and
Sijia Liu and
Feichen Shen and
Liwei Wang and
Elizabeth J. Atkinson and
Shreyasee Amin and
Hongfang Liu},
title = {A clinical text classification paradigm using weak supervision and
deep representation},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19},
number = {1},
pages = {1:1--1:13},
year = {2019},
url = {https://doi.org/10.1186/s12911-018-0723-6},
doi = {10.1186/S12911-018-0723-6},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/WangSLSWAAL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ShenZWRWLL19,
author = {Feichen Shen and
Yiqing Zhao and
Liwei Wang and
Majid Rastegar{-}Mojarad and
Yanshan Wang and
Sijia Liu and
Hongfang Liu},
title = {Rare disease knowledge enrichment through a data-driven approach},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19},
number = {1},
pages = {32:1--32:11},
year = {2019},
url = {https://doi.org/10.1186/s12911-019-0752-9},
doi = {10.1186/S12911-019-0752-9},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ShenZWRWLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/SadatAMPLJ19,
author = {Md. Nazmus Sadat and
Md Momin Al Aziz and
Noman Mohammed and
Serguei Pakhomov and
Hongfang Liu and
Xiaoqian Jiang},
title = {A privacy-preserving distributed filtering framework for {NLP} artifacts},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19},
number = {1},
pages = {183:1--183:10},
year = {2019},
url = {https://doi.org/10.1186/s12911-019-0867-z},
doi = {10.1186/S12911-019-0867-Z},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/SadatAMPLJ19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/WangWSRL19,
author = {Liwei Wang and
Yanshan Wang and
Feichen Shen and
Majid Rastegar{-}Mojarad and
Hongfang Liu},
title = {Discovering associations between problem list and practice setting},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19-S},
number = {3},
pages = {13--22},
year = {2019},
url = {https://doi.org/10.1186/s12911-019-0779-y},
doi = {10.1186/S12911-019-0779-Y},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/WangWSRL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/WangMSAAL19,
author = {Yanshan Wang and
Saeed Mehrabi and
Sunghwan Sohn and
Elizabeth J. Atkinson and
Shreyasee Amin and
Hongfang Liu},
title = {Natural language processing of radiology reports for identification
of skeletal site-specific fractures},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19-S},
number = {3},
pages = {23--29},
year = {2019},
url = {https://doi.org/10.1186/s12911-019-0780-5},
doi = {10.1186/S12911-019-0780-5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/WangMSAAL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/WangLWWYL19,
author = {Liwei Wang and
Lei Luo and
Yanshan Wang and
Jason A. Wampfler and
Ping Yang and
Hongfang Liu},
title = {Natural language processing for populating lung cancer clinical research
data},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19-S},
number = {5},
pages = {2},
year = {2019},
url = {https://doi.org/10.1186/s12911-019-0931-8},
doi = {10.1186/S12911-019-0931-8},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/WangLWWYL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/LiuWL19,
author = {Sijia Liu and
Yanshan Wang and
Hongfang Liu},
title = {Selected articles from the BioCreative/OHNLP challenge 2018},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {19-S},
number = {10},
pages = {262},
year = {2019},
url = {https://doi.org/10.1186/s12911-019-0994-6},
doi = {10.1186/S12911-019-0994-6},
timestamp = {Fri, 08 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/LiuWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/mlc/ZhouZFLYL19,
author = {Guoqiang Zhou and
Shuai Zhang and
Yi Fan and
Jingjin Li and
Wenbo Yao and
Hongfang Liu},
title = {Recommendations based on user effective point-of-interest path},
journal = {Int. J. Mach. Learn. Cybern.},
volume = {10},
number = {10},
pages = {2887--2899},
year = {2019},
url = {https://doi.org/10.1007/s13042-018-00910-5},
doi = {10.1007/S13042-018-00910-5},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/mlc/ZhouZFLYL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/00030KSSHNLL19,
author = {David Chen and
Sijia Liu and
Paul R. Kingsbury and
Sunghwan Sohn and
Curtis B. Storlie and
Elizabeth B. Habermann and
James M. Naessens and
David W. Larson and
Hongfang Liu},
title = {Deep learning and alternative learning strategies for retrospective
real-world clinical data},
journal = {npj Digit. Medicine},
volume = {2},
year = {2019},
url = {https://doi.org/10.1038/s41746-019-0122-0},
doi = {10.1038/S41746-019-0122-0},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/00030KSSHNLL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/npjdm/WenFMWRK0SLF19,
author = {Andrew Wen and
Sunyang Fu and
Sungrim Moon and
Mohamed El Wazir and
Andrew Rosenbaum and
Vinod C. Kaggal and
Sijia Liu and
Sunghwan Sohn and
Hongfang Liu and
Jungwei Fan},
title = {Desiderata for delivering {NLP} to accelerate healthcare {AI} advancement
and a Mayo Clinic NLP-as-a-service implementation},
journal = {npj Digit. Medicine},
volume = {2},
year = {2019},
url = {https://doi.org/10.1038/s41746-019-0208-8},
doi = {10.1038/S41746-019-0208-8},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/npjdm/WenFMWRK0SLF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ChaudhryMKWRLSC19,
author = {Alisha Chaudhry and
Sungrim Moon and
Vinod Kaggal and
Paul Wennberg and
Thom Rooke and
David Liedl and
Christopher Scott and
Ana Casanegra and
Iftikhar J. Kullo and
Robert McBane and
Jane L. Shellum and
Rick Nishimura and
Rajeev Chaudhry and
Hongfang Liu and
Adelaide M. Arruda{-}Olson},
title = {Usability Evaluation of a Clinical Decision Support Tool for Management
of Peripheral Artery Disease Patients},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3201833-1.4574376/3203230-1.4574373},
timestamp = {Wed, 17 Apr 2024 11:47:08 +0200},
biburl = {https://dblp.org/rec/conf/amia/ChaudhryMKWRLSC19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MoonKSLCA19,
author = {Sungrim Moon and
Vinod Kaggal and
Sunghwan Sohn and
Hongfang Liu and
Rajeev Chaudhry and
Adelaide M. Arruda{-}Olson},
title = {Adaptation of a Natural Language Processing Algorithm Following Implementation
of a New Electronic Health Record},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3202214-1.4573977/3201334-1.4573974},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MoonKSLCA19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PetersonL19,
author = {Kevin J. Peterson and
Hongfang Liu},
title = {A Data-Driven System for Defining Interoperable Semantic Models of
Clinical Concepts using {HL7} {FHIR} Profiles: {A} Proposed Framework},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3201203-1.4573893/3202256-1.4573890},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PetersonL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ShenZL19,
author = {Feichen Shen and
Yiqing Zhao and
Hongfang Liu},
title = {Leveraging a Data-Driven Strategy to Enrich Rare Disease Knowledge},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3203226-1.4573740/3203326-1.4573737},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ShenZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/TaftiCLPH19,
author = {Ahmad P. Tafti and
Edin Cubro and
Hongfang Liu and
Brian W. Pickering and
Vitaly Herasevich},
title = {Privacy-preserving and non-intrusive video recognition technique to
count the number of patient room visits during patient deterioration:
a simulation study},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3200432-1.4573656/3200841-1.4573653},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/TaftiCLPH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangBDKLZL19,
author = {Liwei Wang and
Suzette J. Bielinski and
Paul A. Decker and
Jill M. Killian and
Nicholas B. Larson and
Rui Zhang and
Hongfang Liu},
title = {Association between Cardiotoxic Chemotherapy and Myocardial Infarction},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3203445-1.4573590/3202699-1.4573587},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangBDKLZL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangWD0YL19,
author = {Liwei Wang and
Jason A. Wampfler and
Angela Dispenzieri and
Hua Xu and
Ping Yang and
Hongfang Liu},
title = {Achievability to Extract Specific Date Information for Cancer Research},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t004-1.4574923/t004-1.4574924/3203082-1.4574952/3202666-1.4574949},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangWD0YL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangWLSBWL19,
author = {Yanshan Wang and
Andrew Wen and
Sijia Liu and
Jennifer L. St. Sauver and
Adil E. Bharucha and
Chunhua Weng and
Hongfang Liu},
title = {Clinical Use of an Information Retrieval Framework for Cohort Discovery
from Electronic Health Records},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3203339-1.4573581/3201756-1.4573578},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangWLSBWL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZhaoWKPEL19,
author = {Yiqing Zhao and
Yanshan Wang and
Paul R. Kingsbury and
Michael Panzer and
Richard Van Ert and
Hongfang Liu},
title = {Summarization of Patient Education Material for New Media Platform},
booktitle = {{AMIA} 2019, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2019},
publisher = {{AMIA}},
year = {2019},
url = {https://knowledge.amia.org/69862-amia-1.4570936/t007-1.4573510/t007-1.4573511/3202688-1.4573521/3202682-1.4573518},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZhaoWKPEL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/TaftiWSSKL19,
author = {Ahmad P. Tafti and
Yanshan Wang and
Feichen Shen and
Elham Sagheb and
Paul R. Kingsbury and
Hongfang Liu},
title = {Integrating word embedding neural networks with PubMed abstracts to
extract keyword proximity of chronic diseases},
booktitle = {2019 {IEEE} {EMBS} International Conference on Biomedical {\&}
Health Informatics, {BHI} 2019, Chicago, IL, USA, May 19-22, 2019},
pages = {1--4},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/BHI.2019.8834626},
doi = {10.1109/BHI.2019.8834626},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bhi/TaftiWSSKL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/TaftiFKMPTYL19,
author = {Ahmad P. Tafti and
Sunyang Fu and
Aditya Khurana and
George M. Mastorakos and
Kenneth G. Poole and
Stephen J. Traub and
James A. Yiannias and
Hongfang Liu},
editor = {Illhoi Yoo and
Jinbo Bi and
Xiaohua Hu},
title = {Artificial intelligence to organize patient portal messages: a journey
from an ensemble deep learning text classification to rule-based named
entity recognition},
booktitle = {2019 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2019, San Diego, CA, USA, November 18-21, 2019},
pages = {1380--1387},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/BIBM47256.2019.8982942},
doi = {10.1109/BIBM47256.2019.8982942},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/TaftiFKMPTYL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bigdataconf/WenWK0LF19,
author = {Andrew Wen and
Yanshan Wang and
Vinod C. Kaggal and
Sijia Liu and
Hongfang Liu and
Jungwei Fan},
editor = {Chaitanya K. Baru and
Jun Huan and
Latifur Khan and
Xiaohua Hu and
Ronay Ak and
Yuanyuan Tian and
Roger S. Barga and
Carlo Zaniolo and
Kisung Lee and
Yanfang (Fanny) Ye},
title = {Enhancing Clinical Information Retrieval through Context-Aware Queries
and Indices},
booktitle = {2019 {IEEE} International Conference on Big Data {(IEEE} BigData),
Los Angeles, CA, USA, December 9-12, 2019},
pages = {2800--2807},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/BigData47090.2019.9006241},
doi = {10.1109/BIGDATA47090.2019.9006241},
timestamp = {Tue, 18 Oct 2022 14:44:48 +0200},
biburl = {https://dblp.org/rec/conf/bigdataconf/WenWK0LF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WangLWWYL19,
author = {Liwei Wang and
Lei Luo and
Yanshan Wang and
Jason A. Wampfler and
Ping Yang and
Hongfang Liu},
title = {Information Extraction for Populating Lung Cancer Clinical Research
Data},
booktitle = {2019 {IEEE} International Conference on Healthcare Informatics, {ICHI}
2019, Xi'an, China, June 10-13, 2019},
pages = {1--2},
publisher = {{IEEE}},
year = {2019},
url = {https://doi.org/10.1109/ICHI.2019.8904601},
doi = {10.1109/ICHI.2019.8904601},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/ichi/WangLWWYL19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/SoysalWWJHJDSSW19,
author = {Ergin Soysal and
Jeremy L. Warner and
Jingqi Wang and
Min Jiang and
Krysten Harvey and
Sandeep Kumar Jain and
Xiao Dong and
Hsing{-}yi Song and
Harish Siddhanamatha and
Liwei Wang and
Qi Dai and
Qingxia Chen and
Xianglin Du and
Cui Tao and
Ping Yang and
Joshua Charles Denny and
Hongfang Liu and
Hua Xu},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Developing Customizable Cancer Information Extraction Modules for
Pathology Reports Using {CLAMP}},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {1041--1045},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190383},
doi = {10.3233/SHTI190383},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/SoysalWWJHJDSSW19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/TaftiDHLH19,
author = {Ahmad P. Tafti and
Yue Dong and
Elizabeth B. Habermann and
Hongfang Liu and
Vitaly Herasevich},
editor = {Lucila Ohno{-}Machado and
Brigitte S{\'{e}}roussi},
title = {Relationship Between Very Cold Outside Weather and Surgical Outcome:
Integrating Shallow and Deep Artificial Neural Nets},
booktitle = {{MEDINFO} 2019: Health and Wellbeing e-Networks for All - Proceedings
of the 17th World Congress on Medical and Health Informatics, Lyon,
France, 25-30 August 2019},
series = {Studies in Health Technology and Informatics},
volume = {264},
pages = {1783--1784},
publisher = {{IOS} Press},
year = {2019},
url = {https://doi.org/10.3233/SHTI190646},
doi = {10.3233/SHTI190646},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/TaftiDHLH19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/GonzalezLLWBCDF19,
author = {Graciela Gonzalez and
Zhiyong Lu and
Robert Leaman and
Davy Weissenbacher and
Mary Regina Boland and
Yong Chen and
Jingcheng Du and
Juliane Fluck and
Casey S. Greene and
John H. Holmes and
Aditya Kashyap and
Rikke Linnemann Nielsen and
Zhengqing Ouyang and
Sebastian Schaaf and
Jaclyn N. Taroni and
Cui Tao and
Yuping Zhang and
Hongfang Liu},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Text Mining and Machine Learning for Precision Medicine},
booktitle = {Biocomputing 2019: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2019},
pages = {449--454},
year = {2019},
url = {http://psb.stanford.edu/psb-online/proceedings/psb19/wkshop-text.pdf},
timestamp = {Wed, 09 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/psb/GonzalezLLWBCDF19.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1901-07601,
author = {Sijia Liu and
Yanshan Wang and
Andrew Wen and
Liwei Wang and
Na Hong and
Feichen Shen and
Steven Bedrick and
William R. Hersh and
Hongfang Liu},
title = {{CREATE:} Cohort Retrieval Enhanced by Analysis of Text from Electronic
Health Records using {OMOP} Common Data Model},
journal = {CoRR},
volume = {abs/1901.07601},
year = {2019},
url = {http://arxiv.org/abs/1901.07601},
eprinttype = {arXiv},
eprint = {1901.07601},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1901-07601.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1905-10309,
author = {Yanshan Wang and
Yiqing Zhao and
Terry M. Therneau and
Elizabeth J. Atkinson and
Ahmad P. Tafti and
Nan Zhang and
Shreyasee Amin and
Andrew H. Limper and
Hongfang Liu},
title = {Unsupervised Machine Learning for the Discovery of Latent Disease
Clusters and Patient Subgroups Using Electronic Health Records},
journal = {CoRR},
volume = {abs/1905.10309},
year = {2019},
url = {http://arxiv.org/abs/1905.10309},
eprinttype = {arXiv},
eprint = {1905.10309},
timestamp = {Wed, 29 May 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1905-10309.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1906-09543,
author = {Jun Jiang and
Shumao Pang and
Xia Zhao and
Liwei Wang and
Andrew Wen and
Hongfang Liu and
Qianjin Feng},
title = {Cross-lingual Data Transformation and Combination for Text Classification},
journal = {CoRR},
volume = {abs/1906.09543},
year = {2019},
url = {http://arxiv.org/abs/1906.09543},
eprinttype = {arXiv},
eprint = {1906.09543},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1906-09543.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1908-10678,
author = {Yanshan Wang and
Krishna B. Soundararajan and
Sunyang Fu and
Luke A. Carlson and
Rebecca A. Smith and
David S. Knopman and
Hongfang Liu},
title = {How Good is Artificial Intelligence at Automatically Answering Consumer
Questions Related to Alzheimer's Disease?},
journal = {CoRR},
volume = {abs/1908.10678},
year = {2019},
url = {http://arxiv.org/abs/1908.10678},
eprinttype = {arXiv},
eprint = {1908.10678},
timestamp = {Thu, 29 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1908-10678.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1910-11377,
author = {Sunyang Fu and
David Chen and
Sijia Liu and
Sungrim Moon and
Kevin J. Peterson and
Feichen Shen and
Yanshan Wang and
Liwei Wang and
Andrew Wen and
Yiqing Zhao and
Sunghwan Sohn and
Hongfang Liu},
title = {Development of Clinical Concept Extraction Applications: {A} Methodology
Review},
journal = {CoRR},
volume = {abs/1910.11377},
year = {2019},
url = {http://arxiv.org/abs/1910.11377},
eprinttype = {arXiv},
eprint = {1910.11377},
timestamp = {Thu, 19 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1910-11377.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/aci/RavikumarMSKWLC18,
author = {K. E. Ravikumar and
Kathy L. MacLaughlin and
Marianne R. Scheitel and
Maya Kessler and
Kavishwar B. Wagholikar and
Hongfang Liu and
Rajeev Chaudhry},
title = {Improving the Accuracy of a Clinical Decision Support System for Cervical
Cancer Screening and Surveillance},
journal = {Appl. Clin. Inform.},
volume = {09},
number = {01},
pages = {62--71},
year = {2018},
url = {https://doi.org/10.1055/s-0037-1617451},
doi = {10.1055/S-0037-1617451},
timestamp = {Fri, 04 Jun 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/aci/RavikumarMSKWLC18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/LiuSEWRCL18,
author = {Sijia Liu and
Feichen Shen and
Ravikumar Komandur Elayavilli and
Yanshan Wang and
Majid Rastegar{-}Mojarad and
Vipin Chaudhary and
Hongfang Liu},
title = {Extracting chemical-protein relations using attention-based neural
networks},
journal = {Database J. Biol. Databases Curation},
volume = {2018},
pages = {bay102},
year = {2018},
url = {https://doi.org/10.1093/database/bay102},
doi = {10.1093/DATABASE/BAY102},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/LiuSEWRCL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/AfzalMSLCSKA18,
author = {Naveed Afzal and
Vishnu Priya Mallipeddi and
Sunghwan Sohn and
Hongfang Liu and
Rajeev Chaudhry and
Christopher Scott and
Iftikhar J. Kullo and
Adelaide M. Arruda{-}Olson},
title = {Natural language processing of clinical notes for identification of
critical limb ischemia},
journal = {Int. J. Medical Informatics},
volume = {111},
pages = {83--89},
year = {2018},
url = {https://doi.org/10.1016/j.ijmedinf.2017.12.024},
doi = {10.1016/J.IJMEDINF.2017.12.024},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/AfzalMSLCSKA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SoysalWJWPLX18,
author = {Ergin Soysal and
Jingqi Wang and
Min Jiang and
Yonghui Wu and
Serguei Pakhomov and
Hongfang Liu and
Hua Xu},
title = {{CLAMP} - a toolkit for efficiently building customized clinical natural
language processing pipelines},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {3},
pages = {331--336},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocx132},
doi = {10.1093/JAMIA/OCX132},
timestamp = {Thu, 03 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SoysalWJWPLX18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SohnWWKRAJL18,
author = {Sunghwan Sohn and
Yanshan Wang and
Chung{-}Il Wi and
Elizabeth A. Krusemark and
Euijung Ryu and
Mir H. Ali and
Young J. Juhn and
Hongfang Liu},
title = {Clinical documentation variations and {NLP} system portability: a
case study in asthma birth cohorts across institutions},
journal = {J. Am. Medical Informatics Assoc.},
volume = {25},
number = {3},
pages = {353--359},
year = {2018},
url = {https://doi.org/10.1093/jamia/ocx138},
doi = {10.1093/JAMIA/OCX138},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SohnWWKRAJL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WangWRMSALZMSL18,
author = {Yanshan Wang and
Liwei Wang and
Majid Rastegar{-}Mojarad and
Sungrim Moon and
Feichen Shen and
Naveed Afzal and
Sijia Liu and
Yuqun Zeng and
Saeed Mehrabi and
Sunghwan Sohn and
Hongfang Liu},
title = {Clinical information extraction applications: {A} literature review},
journal = {J. Biomed. Informatics},
volume = {77},
pages = {34--49},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2017.11.011},
doi = {10.1016/J.JBI.2017.11.011},
timestamp = {Tue, 01 Dec 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WangWRMSALZMSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WuLSMWJL18,
author = {Stephen T. Wu and
Sijia Liu and
Sunghwan Sohn and
Sungrim Moon and
Chung{-}Il Wi and
Young J. Juhn and
Hongfang Liu},
title = {Modeling asynchronous event sequences with RNNs},
journal = {J. Biomed. Informatics},
volume = {83},
pages = {167--177},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.05.016},
doi = {10.1016/J.JBI.2018.05.016},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WuLSMWJL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WangLARWSKL18,
author = {Yanshan Wang and
Sijia Liu and
Naveed Afzal and
Majid Rastegar{-}Mojarad and
Liwei Wang and
Feichen Shen and
Paul R. Kingsbury and
Hongfang Liu},
title = {A comparison of word embeddings for the biomedical natural language
processing},
journal = {J. Biomed. Informatics},
volume = {87},
pages = {12--20},
year = {2018},
url = {https://doi.org/10.1016/j.jbi.2018.09.008},
doi = {10.1016/J.JBI.2018.09.008},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/WangLARWSKL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ZhaoFLL18,
author = {Yiqing Zhao and
Nooshin J. Fesharaki and
Hongfang Liu and
Jake Luo},
title = {Using data-driven sublanguage pattern mining to induce knowledge models:
application in medical image reports knowledge representation},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {18},
number = {1},
pages = {61:1--61:13},
year = {2018},
url = {https://doi.org/10.1186/s12911-018-0645-3},
doi = {10.1186/S12911-018-0645-3},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/midm/ZhaoFLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/HongZWLYHLLJ18,
author = {Na Hong and
Ning Zhang and
Huawei Wu and
Shanshan Lu and
Yue Yu and
Li Hou and
Yinying Lu and
Hongfang Liu and
Guoqian Jiang},
title = {Preliminary exploration of survival analysis using the {OHDSI} common
data model: a case study of intrahepatic cholangiocarcinoma},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {18},
number = {{S-5}},
pages = {81--88},
year = {2018},
url = {https://doi.org/10.1186/s12911-018-0686-7},
doi = {10.1186/S12911-018-0686-7},
timestamp = {Sun, 06 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/HongZWLYHLLJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/0002WSXL18,
author = {Sijia Liu and
Liwei Wang and
Sunghwan Sohn and
Liping Xia and
Hongfang Liu},
title = {{ARETA:} {A} Corpus for Asthma Related Event Temporal Association},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2968447-1.4262716/2976942-1.4262713},
timestamp = {Wed, 17 Apr 2024 11:47:15 +0200},
biburl = {https://dblp.org/rec/conf/amia/0002WSXL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Arruda-OlsonAMS18,
author = {Adelaide M. Arruda{-}Olson and
Naveed Afzal and
Vishnu Priya Mallipeddi and
Ahmad Said and
Homam Moussa Pacha and
Sungrim Moon and
Alisha Chaudhry and
Christopher Scott and
Kent Bailey and
Vinod Kaggal and
Gustavo Oderich and
Iftikhar J. Kullo and
Rick Nishimura and
Rajeev Chaudhry and
Hongfang Liu},
title = {Leveraging the Electronic Health Record to Create an Automated Real-time
Prognostic Tool for Peripheral Arterial Disease},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2975612-1.4263187/2976555-1.4263184},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Arruda-OlsonAMS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/FuLRKKNCLKKL18,
author = {Sunyang Fu and
Lester Y. Leung and
Anne{-}Olivia Raulli and
David F. Kallmes and
Kristin A. Kinsman and
Kristoff B. Nelson and
Michael S. Clark and
Patrick H. Luetmer and
Paul R. Kingsbury and
David M. Kent and
Hongfang Liu},
title = {Natural Language Processing for the Identification of Silent Brain
Infractions from Neuroimaging Reports},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t006-1.4263223/t006-1.4263224/2973495-1.4263486/2973775-1.4263483},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/FuLRKKNCLKKL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/HongWRSLJ18,
author = {Na Hong and
Andrew Wen and
Majid Rastegar{-}Mojarad and
Sunghwan Sohn and
Hongfang Liu and
Guoqian Jiang},
title = {Standardizing Heterogeneous Annotation Corpora Using {HL7} {FHIR}
for Facilitating their Reuse and Integration in Clinical {NLP}},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t004-1.4263758/t004-1.4263759/2976947-1.4263952/2977278-1.4263949},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/HongWRSLJ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JacobsonCLPZ18,
author = {Rebecca Crowley Jacobson and
Wendy W. Chapman and
Hongfang Liu and
Olga V. Patterson and
Daniel S. Zisook},
title = {Natural Language Processing at Scale - Perspectives from Five Healthcare
Organizations},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t002-1.4264134/t002-1.4264135/2974818-1.4264205/2976762-1.4264202},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/JacobsonCLPZ18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Moon0SSGNOCNLA18,
author = {Sungrim Moon and
Sijia Liu and
Sujith Samudrala and
Jane L. Shellum and
Jeffrey B. Geske and
Peter A. Noseworthy and
Steve Ommen and
Rajeev Chaudhry and
Rick Nishimura and
Hongfang Liu and
Adelaide M. Arruda{-}Olson},
title = {Leveraging Electronic Health Records for Identification of Features
Associated with Sudden Death for Hypertrophic Cardiomyopathy Patients},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2970037-1.4262638/2976743-1.4262635},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Moon0SSGNOCNLA18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PetersonL18,
author = {Kevin J. Peterson and
Hongfang Liu},
title = {The Sublanguage of Clinical Problem Lists: {A} Corpus Analysis},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t005-1.4263615/t005-1.4263616/2976523-1.4263671/2973843-1.4263668},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PetersonL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ShenL18,
author = {Feichen Shen and
Hongfang Liu},
title = {Incorporating Knowledge-Driven Insights into a Collaborative Filtering
Model to Facilitate the Differential Diagnosis of Rare Diseases},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t005-1.4263615/t005-1.4263616/2975482-1.4263653/2974741-1.4263650},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ShenL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ShenL18a,
author = {Feichen Shen and
Hongfang Liu},
title = {Combining Knowledge and Data Driven Insights to Facilitate the Differential
Diagnosis of Rare Diseases},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2970129-1.4262425/2974655-1.4262422},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ShenL18a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangLWWYL18,
author = {Liwei Wang and
Lei Luo and
Yanshan Wang and
Jason A. Wampfler and
Ping Yang and
Hongfang Liu},
title = {Information Extraction for Data Population in Lung Cancer Clinical
Research},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2968778-1.4262290/2977094-1.4262287},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangLWWYL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangW0L18,
author = {Yanshan Wang and
Andrew Wen and
Sijia Liu and
Hongfang Liu},
title = {{EMIRS:} An Electronic Medical Information Retrieval System by Leveraging
both Structured and Unstructured Electronic Health Records},
booktitle = {{AMIA} 2018, American Medical Informatics Association Annual Symposium,
San Francisco, CA, November 3-7, 2018},
publisher = {{AMIA}},
year = {2018},
url = {https://knowledge.amia.org/67852-amia-1.4259402/t007-1.4262189/t007-1.4262190/2976889-1.4262278/2972889-1.4262275},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangW0L18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Rastegar-Mojarad18,
author = {Majid Rastegar{-}Mojarad and
Sijia Liu and
Yanshan Wang and
Naveed Afzal and
Liwei Wang and
Feichen Shen and
Sunyang Fu and
Hongfang Liu},
editor = {Amarda Shehu and
Cathy H. Wu and
Christina Boucher and
Jing Li and
Hongfang Liu and
Mihai Pop},
title = {BioCreative/OHNLP Challenge 2018},
booktitle = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2018, Washington,
DC, USA, August 29 - September 01, 2018},
pages = {575},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3233547.3233672},
doi = {10.1145/3233547.3233672},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/Rastegar-Mojarad18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/PengFWWLLS18,
author = {Su{-}Yuan Peng and
Yadan Fan and
Liwei Wang and
Andrew Wen and
Xusheng Liu and
Hongfang Liu and
Feichen Shen},
editor = {Huiru Jane Zheng and
Zoraida Callejas and
David Griol and
Haiying Wang and
Xiaohua Hu and
Harald H. H. W. Schmidt and
Jan Baumbach and
Julie Dickerson and
Le Zhang},
title = {Leveraging Association Rule Mining to Detect Pathophysiological Mechanisms
of Chronic Kidney Disease Complicated by Metabolic Syndrome},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2018, Madrid, Spain, December 3-6, 2018},
pages = {1302--1309},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621226},
doi = {10.1109/BIBM.2018.8621226},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/PengFWWLLS18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhaoWWYSPRSL18,
author = {Yiqing Zhao and
Yanshan Wang and
Henry Wang and
Benjamin Yan and
Feichen Shen and
Kevin J. Peterson and
Walter A. Rocca and
Jennifer St. Sauver and
Hongfang Liu},
editor = {Huiru Jane Zheng and
Zoraida Callejas and
David Griol and
Haiying Wang and
Xiaohua Hu and
Harald H. H. W. Schmidt and
Jan Baumbach and
Julie Dickerson and
Le Zhang},
title = {Annotating Cohort Data Elements with {OHDSI} Common Data Model to
Promote Research Reproducibility},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2018, Madrid, Spain, December 3-6, 2018},
pages = {1310--1317},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.ieeecomputersociety.org/10.1109/BIBM.2018.8621269},
doi = {10.1109/BIBM.2018.8621269},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/ZhaoWWYSPRSL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WangREWL18,
author = {Liwei Wang and
Majid Rastegar{-}Mojarad and
Ravikumar Komandur Elayavilli and
Yanshan Wang and
Hongfang Liu},
title = {Identification of Genetic Causality Statements in Medline Abstracts
Leveraging Distant Supervision},
booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
{ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
pages = {1--8},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICHI-W.2018.00008},
doi = {10.1109/ICHI-W.2018.00008},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/WangREWL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/Shen0WWWLL18,
author = {Feichen Shen and
Sijia Liu and
Yanshan Wang and
Liwei Wang and
Andrew Wen and
Andrew H. Limper and
Hongfang Liu},
title = {Constructing Node Embeddings for Human Phenotype Ontology to Assist
Phenotypic Similarity Measurement},
booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
{ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
pages = {29--33},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICHI-W.2018.00011},
doi = {10.1109/ICHI-W.2018.00011},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/Shen0WWWLL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WangWSRL18,
author = {Liwei Wang and
Yanshan Wang and
Feichen Shen and
Majid Rastegar{-}Mojarad and
Hongfang Liu},
title = {Predicting Practice Setting Using Topic Modeling},
booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
{ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
pages = {62--63},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICHI-W.2018.00020},
doi = {10.1109/ICHI-W.2018.00020},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/WangWSRL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/Wang0SAAL18,
author = {Yanshan Wang and
Saeed Mehrabi and
Sunghwan Sohn and
Elizabeth J. Atkinson and
Shreyasee Amin and
Hongfang Liu},
title = {Automatic Extraction of Major Osteoporotic Fractures from Radiology
Reports using Natural Language Processing},
booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
{ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
pages = {64--65},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICHI-W.2018.00021},
doi = {10.1109/ICHI-W.2018.00021},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/Wang0SAAL18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/ZhouLW18,
author = {Xin Zhou and
Hongfang Liu and
Yanshan Wang},
title = {A Comparison of Lifestyle Interventions for Alzheimer's Disease Extracted
from Clinical Notes and Literature},
booktitle = {{IEEE} International Conference on Healthcare Informatics Workshops,
{ICHI} Workshops 2018, New York, NY, USA, June 4-7, 2018},
pages = {74--75},
publisher = {{IEEE} Computer Society},
year = {2018},
url = {https://doi.org/10.1109/ICHI-W.2018.00026},
doi = {10.1109/ICHI-W.2018.00026},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/ZhouLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/Gonzalez-Hernandez18,
author = {Graciela Gonzalez{-}Hernandez and
Abeed Sarker and
Karen O'Connor and
Casey S. Greene and
Hongfang Liu},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Marylyn D. Ritchie and
Teri E. Klein},
title = {Session Introduction},
booktitle = {Biocomputing 2018: Proceedings of the Pacific Symposium, The Big Island
of Hawaii, Hawaii, USA, January 3-7, 2018},
pages = {559--565},
year = {2018},
url = {http://psb.stanford.edu/psb-online/proceedings/psb18/intro-text.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/Gonzalez-Hernandez18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/WangW0L18,
author = {Yanshan Wang and
Andrew Wen and
Sijia Liu and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {MayoNLPTeam at the {TREC} 2018 Precision Medicine Track: Simple Information
Retrieval Approach Is the Best},
booktitle = {Proceedings of the Twenty-Seventh Text REtrieval Conference, {TREC}
2018, Gaithersburg, Maryland, USA, November 14-16, 2018},
series = {{NIST} Special Publication},
volume = {500-331},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2018},
url = {https://trec.nist.gov/pubs/trec27/papers/MayoNLPTeam-PM.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:25 +0100},
biburl = {https://dblp.org/rec/conf/trec/WangW0L18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@proceedings{DBLP:conf/bcb/2018,
editor = {Amarda Shehu and
Cathy H. Wu and
Christina Boucher and
Jing Li and
Hongfang Liu and
Mihai Pop},
title = {Proceedings of the 2018 {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2018, Washington,
DC, USA, August 29 - September 01, 2018},
publisher = {{ACM}},
year = {2018},
url = {https://doi.org/10.1145/3233547},
doi = {10.1145/3233547},
timestamp = {Wed, 21 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/2018.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1802-00400,
author = {Yanshan Wang and
Sijia Liu and
Naveed Afzal and
Majid Rastegar{-}Mojarad and
Liwei Wang and
Feichen Shen and
Paul R. Kingsbury and
Hongfang Liu},
title = {A Comparison of Word Embeddings for the Biomedical Natural Language
Processing},
journal = {CoRR},
volume = {abs/1802.00400},
year = {2018},
url = {http://arxiv.org/abs/1802.00400},
eprinttype = {arXiv},
eprint = {1802.00400},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1802-00400.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1803-08850,
author = {Feichen Shen and
David W. Larson and
James M. Naessens and
Elizabeth B. Habermann and
Hongfang Liu and
Sunghwan Sohn},
title = {Detection of Surgical Site Infection Utilizing Automated Feature Generation
in Clinical Notes},
journal = {CoRR},
volume = {abs/1803.08850},
year = {2018},
url = {http://arxiv.org/abs/1803.08850},
eprinttype = {arXiv},
eprint = {1803.08850},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1803-08850.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1804-07814,
author = {Yanshan Wang and
Sunghwan Sohn and
Sijia Liu and
Feichen Shen and
Liwei Wang and
Elizabeth J. Atkinson and
Shreyasee Amin and
Hongfang Liu},
title = {A Deep Representation Empowered Distant Supervision Paradigm for Clinical
Information Extraction},
journal = {CoRR},
volume = {abs/1804.07814},
year = {2018},
url = {http://arxiv.org/abs/1804.07814},
eprinttype = {arXiv},
eprint = {1804.07814},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/abs-1804-07814.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/abs-1808-09397,
author = {Yanshan Wang and
Naveed Afzal and
Sunyang Fu and
Liwei Wang and
Feichen Shen and
Majid Rastegar{-}Mojarad and
Hongfang Liu},
title = {MedSTS: {A} Resource for Clinical Semantic Textual Similarity},
journal = {CoRR},
volume = {abs/1808.09397},
year = {2018},
url = {http://arxiv.org/abs/1808.09397},
eprinttype = {arXiv},
eprint = {1808.09397},
timestamp = {Thu, 19 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/corr/abs-1808-09397.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/RavikumarRL17,
author = {K. E. Ravikumar and
Majid Rastegar{-}Mojarad and
Hongfang Liu},
title = {BELMiner: adapting a rule-based relation extraction system to extract
biological expression language statements from bio-medical literature
evidence sentences},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {baw156},
year = {2017},
url = {https://doi.org/10.1093/database/baw156},
doi = {10.1093/DATABASE/BAW156},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/RavikumarRL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/WangREL17,
author = {Yanshan Wang and
Majid Rastegar{-}Mojarad and
Ravikumar Komandur Elayavilli and
Hongfang Liu},
title = {Leveraging word embeddings and medical entity extraction for biomedical
dataset retrieval using unstructured texts},
journal = {Database J. Biol. Databases Curation},
volume = {2017},
pages = {bax091},
year = {2017},
url = {https://doi.org/10.1093/database/bax091},
doi = {10.1093/DATABASE/BAX091},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/WangREL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/comsis/WangCL17,
author = {Yanshan Wang and
In{-}Chan Choi and
Hongfang Liu},
title = {Generalized ensemble model for document ranking in information retrieval},
journal = {Comput. Sci. Inf. Syst.},
volume = {14},
number = {1},
pages = {123--151},
year = {2017},
url = {https://doi.org/10.2298/CSIS160229042W},
doi = {10.2298/CSIS160229042W},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/comsis/WangCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/Rastegar-Mojarad17,
author = {Majid Rastegar{-}Mojarad and
Sunghwan Sohn and
Liwei Wang and
Feichen Shen and
Troy C. Bleeker and
William A. Cliby and
Hongfang Liu},
title = {Need of informatics in designing interoperable clinical registries},
journal = {Int. J. Medical Informatics},
volume = {108},
pages = {78--84},
year = {2017},
url = {https://doi.org/10.1016/j.ijmedinf.2017.10.004},
doi = {10.1016/J.IJMEDINF.2017.10.004},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/Rastegar-Mojarad17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jasis/WuLWTUBHL17,
author = {Stephen T. Wu and
Sijia Liu and
Yanshan Wang and
Tamara Timmons and
Harsha Uppili and
Steven Bedrick and
William R. Hersh and
Hongfang Liu},
title = {Intrainstitutional {EHR} collections for patient-level information
retrieval},
journal = {J. Assoc. Inf. Sci. Technol.},
volume = {68},
number = {11},
pages = {2636--2648},
year = {2017},
url = {https://doi.org/10.1002/asi.23884},
doi = {10.1002/ASI.23884},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jasis/WuLWTUBHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/AfzalWSWL17,
author = {Naveed Afzal and
Yanshan Wang and
Feichen Shen and
Liwei Wang and
Hongfang Liu},
title = {A Resource for Clinical Semantic Textual Similarity},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t004-1.4257399/f004-1.4257400/2730825-1.4258372/2731320-1.4258369},
timestamp = {Wed, 17 Apr 2024 11:47:24 +0200},
biburl = {https://dblp.org/rec/conf/amia/AfzalWSWL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/CheSLL17,
author = {Zhengping Che and
Jennifer L. St. Sauver and
Hongfang Liu and
Yan Liu},
title = {Deep Learning Solutions for Classifying Patients on Opioid Use},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2729064-1.4258836/2717579-1.4258833},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/CheSLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/FinleyKMMLXP17,
author = {Gregory P. Finley and
Benjamin C. Knoll and
Reed McEwan and
Genevieve B. Melton and
Hongfang Liu and
Hua Xu and
Serguei V. S. Pakhomov},
title = {{AMICUS:} {A} Metasystem for Interoperation and Combination of {UIMA}
Systems},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t006-1.4257302/f006-1.4257303/2728263-1.4257352/2732068-1.4257349},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/FinleyKMMLXP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MallipeddiAKLCA17,
author = {Vishnu Priya Mallipeddi and
Naveed Afzal and
Iftikhar J. Kullo and
Hongfang Liu and
Rajeev Chaudhry and
Adelaide M. Arruda{-}Olson},
title = {Guideline Based Recommended Therapies in {PAD} Patients Identified
by {NLP:} {A} Quality Assessment Project},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t004-1.4257399/f004-1.4257400/2732281-1.4257869/2731884-1.4257866},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MallipeddiAKLCA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MoonIZL17,
author = {Sungrim Moon and
Donna M. Ihrke and
Yuqun Zeng and
Hongfang Liu},
title = {Distinction between medical and non-medical usages of short forms
in clinical narratives},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2731922-1.4258590/2730479-1.4258587},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MoonIZL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/NguforWMLCSK17,
author = {Che Ngufor and
Matthew A. Warner and
Dennis Murphree and
Hongfang Liu and
Rickey E. Carter and
Curtis B. Storlie and
Daryl J. Kor},
title = {Identification of Clinically Meaningful Plasma Transfusion Subgroups
Using Unsupervised Random Forest Clustering},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2730864-1.4258581/2731988-1.4258578},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/NguforWMLCSK17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PetersonJBSL17,
author = {Kevin J. Peterson and
Guoqian Jiang and
Scott M. Brue and
Feichen Shen and
Hongfang Liu},
title = {Mining Hierarchies and Similarity Clusters from Value Set Repositories},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2730999-1.4258569/2729978-1.4258566},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PetersonJBSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Shen0WWAL17,
author = {Feichen Shen and
Sijia Liu and
Yanshan Wang and
Liwei Wang and
Naveed Afzal and
Hongfang Liu},
title = {Leveraging Collaborative Filtering to Accelerate Rare Disease Diagnosis},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t003-1.4258387/f003-1.4258388/2724756-1.4258512/2731365-1.4258509},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Shen0WWAL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Shen0WWAL17a,
author = {Feichen Shen and
Sijia Liu and
Yanshan Wang and
Liwei Wang and
Naveed Afzal and
Hongfang Liu},
title = {Accelerating Rare Disease Diagnosis with Collaborative Filtering},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t004-1.4257399/f004-1.4257400/2728477-1.4257614/2730645-1.4257611},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Shen0WWAL17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnJMWKRL17,
author = {Sunghwan Sohn and
Young J. Juhn and
Sungrim Moon and
Chung{-}Il Wi and
Katherine S. King and
Euijung Ryu and
Hongfang Liu},
title = {Bayesian Prediction of Asthma Exacerbation in Children},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t004-1.4257399/f004-1.4257400/2731807-1.4257590/2731267-1.4257587},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SohnJMWKRL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangAWSL17,
author = {Yanshan Wang and
Naveed Afzal and
Liwei Wang and
Feichen Shen and
Hongfang Liu},
title = {Semantic Representations of Medical Terms: {A} Comparison Study of
Word Embeddings Trained on Clinical Notes and PubMed Articles},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t004-1.4257399/f004-1.4257400/2729020-1.4257497/2730095-1.4257494},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangAWSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZengWS0WRLL17,
author = {Yuqun Zeng and
Yanshan Wang and
Feichen Shen and
Sijia Liu and
Liwei Wang and
Majid Rastegar{-}Mojarad and
Xusheng Liu and
Hongfang Liu},
title = {Recommending education materials for diabetic questions using information
retrieval approaches},
booktitle = {{AMIA} 2017, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 4-8, 2017},
publisher = {{AMIA}},
year = {2017},
url = {https://knowledge.amia.org/65881-amiab-1.4254737/t004-1.4257399/f004-1.4257400/2731980-1.4257425/2731867-1.4257422},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZengWS0WRLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WangLRWSLL17,
author = {Yanshan Wang and
Sijia Liu and
Majid Rastegar{-}Mojarad and
Liwei Wang and
Feichen Shen and
Fei Liu and
Hongfang Liu},
editor = {Nurit Haspel and
Lenore J. Cowen and
Amarda Shehu and
Tamer Kahveci and
Giuseppe Pozzi},
title = {Dependency and {AMR} Embeddings for Drug-Drug Interaction Extraction
from Biomedical Literature},
booktitle = {Proceedings of the 8th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2017, Boston,
MA, USA, August 20-23, 2017},
pages = {36--43},
publisher = {{ACM}},
year = {2017},
url = {https://doi.org/10.1145/3107411.3107426},
doi = {10.1145/3107411.3107426},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/WangLRWSLL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Moon0KCWSCL17,
author = {Sungrim Moon and
Sijia Liu and
Paul R. Kingsbury and
David Chen and
Yanshan Wang and
Feichen Shen and
Rajeev Chaudhry and
Hongfang Liu},
editor = {Xiaohua Hu and
Chi{-}Ren Shyu and
Yana Bromberg and
Jean Gao and
Yang Gong and
Dmitry Korkin and
Illhoi Yoo and
Huiru Jane Zheng},
title = {Medical concept intersection between outside medical records and consultant
notes: {A} case study in transferred cardiovascular patients},
booktitle = {2017 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2017, Kansas City, MO, USA, November 13-16, 2017},
pages = {1495--1500},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/BIBM.2017.8217883},
doi = {10.1109/BIBM.2017.8217883},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/Moon0KCWSCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/0002WICTWL17,
author = {Sijia Liu and
Liwei Wang and
Donna M. Ihrke and
Vipin Chaudhary and
Cui Tao and
Chunhua Weng and
Hongfang Liu},
title = {Correlating Lab Test Results in Clinical Notes with Structured Lab
Data: {A} Case Study in HbA1c and Glucose},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t002-1.3521687/t002-1.3521688/a034-1.3521720/a035-1.3521717},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cri/0002WICTWL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/AfzalSSLKA17,
author = {Naveed Afzal and
Sunghwan Sohn and
Christopher Scott and
Hongfang Liu and
Iftikhar J. Kullo and
Adelaide M. Arruda{-}Olson},
title = {Surveillance of Peripheral Arterial Disease Cases Using Natural Language
Processing of Clinical Notes},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t002-1.3521687/t002-1.3521688/a014-1.3521781},
timestamp = {Tue, 23 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/AfzalSSLKA17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/Arruda-OlsonAPS17,
author = {Adelaide M. Arruda{-}Olson and
Naveed Afzal and
Homam Moussa Pacha and
Ahmad Said and
Bradley Lewis and
Christopher Scott and
Kent Bailey and
Hongfang Liu and
Iftikhar J. Kullo},
title = {Mortality Prognostic Model for Peripheral Arterial Disease},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a045-1.3521684/a046-1.3521681},
timestamp = {Tue, 23 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/Arruda-OlsonAPS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/FinleyKLXMP17,
author = {Gregory P. Finley and
Benjamin C. Knoll and
Hongfang Liu and
Hua Xu and
Genevieve B. Melton and
Serguei V. S. Pakhomov},
title = {Using ensembles of {NLP} engines without a common type system to improve
abbreviation disambiguation},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a057-1.3521646/a058-1.3521643},
timestamp = {Tue, 20 Mar 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/FinleyKLXMP17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/ShenSR0PHSSSL17,
author = {Feichen Shen and
Sunghwan Sohn and
Majid Rastegar{-}Mojarad and
Sijia Liu and
Joshua J. Pankratz and
Michael Hatton and
Nancy Sowada and
Om Shrestha and
Shawna Shurson and
Hongfang Liu},
title = {Populating Physician Biographical Pages Based on {EMR} Data},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t005-1.3521351/t005-1.3521352/a151-1.3521359/a152-1.3521356},
timestamp = {Tue, 23 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/ShenSR0PHSSSL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/WangWR0SL17,
author = {Yanshan Wang and
Liwei Wang and
Majid Rastegar{-}Mojarad and
Sijia Liu and
Feichen Shen and
Hongfang Liu},
title = {Content Analysis of Free-Text Family History},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t004-1.3521377/t004-1.3521378/a136-1.3521406/a137-1.3521403},
timestamp = {Fri, 05 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/cri/WangWR0SL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/ZhouLHNLS17,
author = {Yangmei Zhou and
David W. Larson and
Elizabeth B. Habermann and
James M. Naessens and
Hongfang Liu and
Sunghwan Sohn},
title = {Prediction of Organ Space Colorectal Surgical Site Infections Using
Prognostic Bayesian Networks},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t003-1.3521532/t003-1.3521533/a093-1.3521537/a094-1.3521534},
timestamp = {Tue, 23 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/ZhouLHNLS17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/ZhouLHNLS17a,
author = {Yangmei Zhou and
David W. Larson and
Elizabeth B. Habermann and
James M. Naessens and
Hongfang Liu and
Sunghwan Sohn},
title = {Locally Generated Bayesian Network Prediction of Colorectal Surgical
Site Infections},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2017, San Francisco,
CA, USA, March 27-30, 2017},
publisher = {{AMIA}},
year = {2017},
url = {http://knowledge.amia.org/amia-64484-cri2017-1.3520710/t004-1.3521377/t004-1.3521378/a144-1.3521382/a145-1.3521379},
timestamp = {Tue, 23 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/ZhouLHNLS17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/Rastegar-Mojarad17,
author = {Majid Rastegar{-}Mojarad and
Jenna K. Lovely and
Joshua J. Pankratz and
Sunghwan Sohn and
Donna M. Ihrke and
Amit Merchea and
David W. Larson and
Hongfang Liu},
title = {Using Unstructured Data to Identify Readmitted Patients},
booktitle = {2017 {IEEE} International Conference on Healthcare Informatics, {ICHI}
2017, Park City, UT, USA, August 23-26, 2017},
pages = {1--4},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/ICHI.2017.99},
doi = {10.1109/ICHI.2017.99},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/Rastegar-Mojarad17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/LiuWHSWHL17,
author = {Sijia Liu and
Yanshan Wang and
Na Hong and
Feichen Shen and
Stephen T. Wu and
William R. Hersh and
Hongfang Liu},
title = {On Mapping Textual Queries to a Common Data Model},
booktitle = {2017 {IEEE} International Conference on Healthcare Informatics, {ICHI}
2017, Park City, UT, USA, August 23-26, 2017},
pages = {21--25},
publisher = {{IEEE} Computer Society},
year = {2017},
url = {https://doi.org/10.1109/ICHI.2017.63},
doi = {10.1109/ICHI.2017.63},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/LiuWHSWHL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/ShenWL17,
author = {Feichen Shen and
Liwei Wang and
Hongfang Liu},
editor = {Adi V. Gundlapalli and
Marie{-}Christine Jaulent and
Dongsheng Zhao},
title = {Phenotypic Analysis of Clinical Narratives Using Human Phenotype Ontology},
booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
of the 16th World Congress on Medical and Health Informatics, Hangzhou,
China, 21-25 August 2017},
series = {Studies in Health Technology and Informatics},
volume = {245},
pages = {581--585},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-830-3-581},
doi = {10.3233/978-1-61499-830-3-581},
timestamp = {Thu, 04 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/ShenWL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/WuWW0L17,
author = {Stephen T. Wu and
Andrew Wen and
Yanshan Wang and
Sijia Liu and
Hongfang Liu},
editor = {Adi V. Gundlapalli and
Marie{-}Christine Jaulent and
Dongsheng Zhao},
title = {Aligned-Layer Text Search in Clinical Notes},
booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
of the 16th World Congress on Medical and Health Informatics, Hangzhou,
China, 21-25 August 2017},
series = {Studies in Health Technology and Informatics},
volume = {245},
pages = {629--633},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-830-3-629},
doi = {10.3233/978-1-61499-830-3-629},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/WuWW0L17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/SohnWJL17,
author = {Sunghwan Sohn and
Chung{-}Il Wi and
Young J. Juhn and
Hongfang Liu},
editor = {Adi V. Gundlapalli and
Marie{-}Christine Jaulent and
Dongsheng Zhao},
title = {Analysis of Clinical Variations in Asthma Care Documented in Electronic
Health Records Between Staff and Resident Physicians},
booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
of the 16th World Congress on Medical and Health Informatics, Hangzhou,
China, 21-25 August 2017},
series = {Studies in Health Technology and Informatics},
volume = {245},
pages = {1170--1174},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-830-3-1170},
doi = {10.3233/978-1-61499-830-3-1170},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/SohnWJL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/ShenWL17a,
author = {Feichen Shen and
Liwei Wang and
Hongfang Liu},
editor = {Adi V. Gundlapalli and
Marie{-}Christine Jaulent and
Dongsheng Zhao},
title = {Using Human Phenotype Ontology for Phenotypic Analysis of Clinical
Notes},
booktitle = {{MEDINFO} 2017: Precision Healthcare through Informatics - Proceedings
of the 16th World Congress on Medical and Health Informatics, Hangzhou,
China, 21-25 August 2017},
series = {Studies in Health Technology and Informatics},
volume = {245},
pages = {1285},
publisher = {{IOS} Press},
year = {2017},
url = {https://doi.org/10.3233/978-1-61499-830-3-1285},
doi = {10.3233/978-1-61499-830-3-1285},
timestamp = {Thu, 04 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/ShenWL17a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/LiuSCL17,
author = {Sijia Liu and
Feichen Shen and
Vipin Chaudhary and
Hongfang Liu},
editor = {Steven Bethard and
Marine Carpuat and
Marianna Apidianaki and
Saif M. Mohammad and
Daniel M. Cer and
David Jurgens},
title = {MayoNLP at SemEval 2017 Task 10: Word Embedding Distance Pattern for
Keyphrase Classification in Scientific Publications},
booktitle = {Proceedings of the 11th International Workshop on Semantic Evaluation,
SemEval@ACL 2017, Vancouver, Canada, August 3-4, 2017},
pages = {956--960},
publisher = {Association for Computational Linguistics},
year = {2017},
url = {https://doi.org/10.18653/v1/S17-2166},
doi = {10.18653/V1/S17-2166},
timestamp = {Fri, 06 Aug 2021 00:39:34 +0200},
biburl = {https://dblp.org/rec/conf/semeval/LiuSCL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/WangERL17,
author = {Yanshan Wang and
Ravikumar Komandur Elayavilli and
Majid Rastegar{-}Mojarad and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {Leveraging both Structured and Unstructured Data for Precision Information
Retrieval},
booktitle = {Proceedings of The Twenty-Sixth Text REtrieval Conference, {TREC}
2017, Gaithersburg, Maryland, USA, November 15-17, 2017},
series = {{NIST} Special Publication},
volume = {500-324},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2017},
url = {https://trec.nist.gov/pubs/trec26/papers/MayoNLPTeam\_PM.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/WangERL17.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bib/OellrichCGRSBBG16,
author = {Anika Oellrich and
Nigel Collier and
Tudor Groza and
Dietrich Rebholz{-}Schuhmann and
Nigam Shah and
Olivier Bodenreider and
Mary Regina Boland and
Ivo I. Georgiev and
Hongfang Liu and
Kevin M. Livingston and
Augustin Luna and
Ann{-}Marie Mallon and
Prashanti Manda and
Peter N. Robinson and
Gabriella Rustici and
Michelle Simon and
Liqin Wang and
Rainer Winnenburg and
Michel Dumontier},
title = {The digital revolution in phenotyping},
journal = {Briefings Bioinform.},
volume = {17},
number = {5},
pages = {819--830},
year = {2016},
url = {https://doi.org/10.1093/bib/bbv083},
doi = {10.1093/BIB/BBV083},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bib/OellrichCGRSBBG16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/Rastegar-Mojarad16,
author = {Majid Rastegar{-}Mojarad and
Ravikumar Komandur Elayavilli and
Hongfang Liu},
title = {BELTracker: evidence sentence retrieval for {BEL} statements},
journal = {Database J. Biol. Databases Curation},
volume = {2016},
year = {2016},
url = {https://doi.org/10.1093/database/baw079},
doi = {10.1093/DATABASE/BAW079},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/Rastegar-Mojarad16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ElayavilliWLKL16,
author = {Ravikumar Komandur Elayavilli and
Kavishwar B. Wagholikar and
Dingcheng Li and
Jean{-}Pierre A. Kocher and
Hongfang Liu},
title = {Erratum to: Text mining facilitates database curation - extraction
of mutation-disease associations from Bio-medical literature},
journal = {{BMC} Bioinform.},
volume = {17},
pages = {162},
year = {2016},
url = {https://doi.org/10.1186/s12859-016-0974-0},
doi = {10.1186/S12859-016-0974-0},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/ElayavilliWLKL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/OnikiZBLCPSMKCH16,
author = {Thomas A. Oniki and
Ning Zhuo and
Calvin E. Beebe and
Hongfang Liu and
Joseph F. Coyle and
Craig G. Parker and
Harold R. Solbrig and
Kyle Marchant and
Vinod Kaggal and
Christopher G. Chute and
Stanley M. Huff},
title = {Clinical element models in the SHARPn consortium},
journal = {J. Am. Medical Informatics Assoc.},
volume = {23},
number = {2},
pages = {248--256},
year = {2016},
url = {https://doi.org/10.1093/jamia/ocv134},
doi = {10.1093/JAMIA/OCV134},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/OnikiZBLCPSMKCH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/HongLYXLJ16,
author = {Na Hong and
Dingcheng Li and
Yue Yu and
Qiongying Xiu and
Hongfang Liu and
Guoqian Jiang},
title = {A computational framework for converting textual clinical diagnostic
criteria into the quality data model},
journal = {J. Biomed. Informatics},
volume = {63},
pages = {11--21},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.07.016},
doi = {10.1016/J.JBI.2016.07.016},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/HongLYXLJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/WangWLML16,
author = {Yanshan Wang and
Stephen T. Wu and
Dingcheng Li and
Saeed Mehrabi and
Hongfang Liu},
title = {A Part-Of-Speech term weighting scheme for biomedical information
retrieval},
journal = {J. Biomed. Informatics},
volume = {63},
pages = {379--389},
year = {2016},
url = {https://doi.org/10.1016/j.jbi.2016.08.026},
doi = {10.1016/J.JBI.2016.08.026},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jbi/WangWLML16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jsjkx/ZhouLW18,
author = {Guoqiang Zhou and
Hongfang Liu and
Ziyuan Wang},
title = {{\unicode{21435}}{\unicode{38543}}{\unicode{24847}}{\unicode{25512}}{\unicode{33616}}{\unicode{30340}}{\unicode{20449}}{\unicode{20219}}{\unicode{35780}}{\unicode{20272}}{\unicode{27169}}{\unicode{22411}}
(Trust Evaluation Model with Eliminating Random Recommendation)},
journal = {{\unicode{35745}}{\unicode{31639}}{\unicode{26426}}{\unicode{31185}}{\unicode{23398}}},
volume = {43},
number = {4},
pages = {155--159},
year = {2016},
url = {https://doi.org/10.11896/j.issn.1002-137X.2016.04.031},
doi = {10.11896/J.ISSN.1002-137X.2016.04.031},
timestamp = {Fri, 20 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jsjkx/ZhouLW18.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiCWLH16,
author = {Mei Li and
Yuying Cao and
Liwei Wang and
Hongfang Liu and
Yongqun He},
title = {Ontology-Based Analysis of Adverse Drug Reactions Associated with
Anti-infection Drugs in China},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2499661-1.3363753/2500010-1.3363748},
timestamp = {Wed, 17 Apr 2024 11:47:32 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiCWLH16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiLRWLCTL16,
author = {Dingcheng Li and
Sijia Liu and
Majid Rastegar{-}Mojarad and
Yanshan Wang and
Xiaodi Li and
Vipin Chaudhary and
Terry M. Therneau and
Hongfang Liu},
title = {A Topic-modeling Based Framework for Drug-drug Interaction Classification
from Biomedical Text},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t004-1.3364525/f004-1.3364526/2499084-1.3364777/2499757-1.3364772},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiLRWLCTL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiLRWLCTL16a,
author = {Dingcheng Li and
Sijia Liu and
Majid Rastegar{-}Mojarad and
Yanshan Wang and
Xiaodi Li and
Vipin Chaudhary and
Terry M. Therneau and
Hongfang Liu},
title = {Drug-drug Interaction Detection with {A} Topic-modeling Based Framework
Augmented with Distant-supervision},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2496521-1.3363763/2499954-1.3363758},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiLRWLCTL16a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MeystreLXAWPSWZ16,
author = {St{\'{e}}phane M. Meystre and
Hongfang Liu and
Rong Xu and
Sivaram Arabandi and
Kavishwar B. Wagholikar and
Jon Patrick and
Guergana K. Savova and
Chunhua Weng and
Pierre Zweigenbaum and
Dina Demner{-}Fushman and
{\"{O}}zlem Uzuner and
Hua Xu},
title = {Natural Language Processing Working Group Pre-Symposium: Graduate
Student Consortium and 'Hackathon'},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t009-1.3369175/f009-1.3369176/2499034-1.3369215/2499356-1.3369212},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MeystreLXAWPSWZ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/PetersonJBL16,
author = {Kevin J. Peterson and
Guoqian Jiang and
Scott M. Brue and
Hongfang Liu},
title = {Leveraging Terminology Services for Extract-Transform-Load Processes:
{A} User-Centered Approach},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t004-1.3364525/f004-1.3364526/2497953-1.3364670/2497334-1.3364665},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/PetersonJBL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnWWKRAJL16,
author = {Sunghwan Sohn and
Yanshan Wang and
Chung{-}Il Wi and
Elizabeth A. Krusemark and
Euijung Ryu and
Mir H. Ali and
Young J. Juhn and
Hongfang Liu},
title = {Asthma Ascertainment {NLP} System Portability across Institutions},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2496288-1.3363185/2498452-1.3363180},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SohnWWKRAJL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangLRL16,
author = {Liwei Wang and
Dingcheng Li and
Majid Rastegar{-}Mojarad and
Hongfang Liu},
title = {Discovering Associations between Problem List and Practice Setting},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2500084-1.3363067/2499921-1.3363062},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangLRL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangWLL16,
author = {Yanshan Wang and
Stephen T. Wu and
Dingcheng Li and
Hongfang Liu},
title = {A Part-Of-Speech Weighting Scheme for Clinical Information Retrieval},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2498548-1.3363057/2498457-1.3363052},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangWLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WuWSWKLJ16,
author = {Stephen T. Wu and
Yanshan Wang and
Sunghwan Sohn and
Chung{-}Il Wi and
Elizabeth A. Krusemark and
Hongfang Liu and
Young J. Juhn},
title = {Probabilistic Population-level Modeling of Disease Event Timelines},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t001-1.3365273/f001-1.3365274/2492306-1.3365303/2500419-1.3365298},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WuWSWKLJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZengWWLL16,
author = {Yuqun Zeng and
Liwei Wang and
Yanshan Wang and
Dingcheng Li and
Hongfang Liu},
title = {Answering patients' questions using expert-vetted online resources:
{A} case study of diabetes},
booktitle = {{AMIA} 2016, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 12-16, 2016},
publisher = {{AMIA}},
year = {2016},
url = {https://knowledge.amia.org/amia-63300-1.3360278/t005-1.3362920/f005-1.3362921/2500170-1.3362941/2500037-1.3362936},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZengWWLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/Rastegar-Mojarad16,
author = {Majid Rastegar{-}Mojarad and
Ravikumar Komandur Elayavilli and
Liwei Wang and
Rashmi Prasad and
Hongfang Liu},
title = {Prioritizing Adverse Drug Reaction and Drug Repositioning Candidates
Generated by Literature-Based Discovery},
booktitle = {Proceedings of the 7th {ACM} International Conference on Bioinformatics,
Computational Biology, and Health Informatics, {BCB} 2016, Seattle,
WA, USA, October 2-5, 2016},
pages = {289--296},
publisher = {{ACM}},
year = {2016},
url = {https://doi.org/10.1145/2975167.2975197},
doi = {10.1145/2975167.2975197},
timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
biburl = {https://dblp.org/rec/conf/bcb/Rastegar-Mojarad16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/AfzalSALKA16,
author = {Naveed Afzal and
Sunghwan Sohn and
Sara Abram and
Hongfang Liu and
Iftikhar J. Kullo and
Adelaide M. Arruda{-}Olson},
title = {Identifying peripheral arterial disease cases using natural language
processing of clinical notes},
booktitle = {2016 {IEEE-EMBS} International Conference on Biomedical and Health
Informatics, {BHI} 2016, Las Vegas, NV, USA, February 24-27, 2016},
pages = {126--131},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/BHI.2016.7455851},
doi = {10.1109/BHI.2016.7455851},
timestamp = {Sat, 30 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bhi/AfzalSALKA16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/KnollMLXP16,
author = {Benjamin C. Knoll and
Genevieve B. Melton and
Hongfang Liu and
Hua Xu and
Serguei V. S. Pakhomov},
title = {Using synthetic clinical data to train an HMM-based {POS} tagger},
booktitle = {2016 {IEEE-EMBS} International Conference on Biomedical and Health
Informatics, {BHI} 2016, Las Vegas, NV, USA, February 24-27, 2016},
pages = {252--255},
publisher = {{IEEE}},
year = {2016},
url = {https://doi.org/10.1109/BHI.2016.7455882},
doi = {10.1109/BHI.2016.7455882},
timestamp = {Tue, 20 Mar 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bhi/KnollMLXP16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZengLWLW16,
author = {Yuqun Zeng and
Xusheng Liu and
Liwei Wang and
Hongfang Liu and
Yanshan Wang},
editor = {Tianhai Tian and
Qinghua Jiang and
Yunlong Liu and
Kevin Burrage and
Jiangning Song and
Yadong Wang and
Xiaohua Hu and
Shinichi Morishita and
Qian Zhu and
Guohua Wang},
title = {Answering diabetic patients' questions using expert-vetted online
resources: {A} case study},
booktitle = {{IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2016, Shenzhen, China, December 15-18, 2016},
pages = {525--528},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/BIBM.2016.7822575},
doi = {10.1109/BIBM.2016.7822575},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/ZengLWLW16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/WangWL16,
author = {Yanshan Wang and
Stephen T. Wu and
Hongfang Liu},
editor = {Krisztian Balog and
Linda Cappellato and
Nicola Ferro and
Craig Macdonald},
title = {MayoNLPTeam at the 2016 {CLEF} eHealth Information Retrieval Task
1},
booktitle = {Working Notes of {CLEF} 2016 - Conference and Labs of the Evaluation
forum, {\'{E}}vora, Portugal, 5-8 September, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1609},
pages = {198--204},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1609/16090198.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:40 +0100},
biburl = {https://dblp.org/rec/conf/clef/WangWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/LiuWMLL16,
author = {Sijia Liu and
Yanshan Wang and
Saeed Mehrabi and
Dingcheng Li and
Hongfang Liu},
editor = {Krisztian Balog and
Linda Cappellato and
Nicola Ferro and
Craig Macdonald},
title = {MayoBMI at ImageCLEF 2016 Handwritten Document Retrieval Task},
booktitle = {Working Notes of {CLEF} 2016 - Conference and Labs of the Evaluation
forum, {\'{E}}vora, Portugal, 5-8 September, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1609},
pages = {347--355},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1609/16090347.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/LiuWMLL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/0002LCL16,
author = {Sijia Liu and
Hongfang Liu and
Vipin Chaudhary and
Dingcheng Li},
title = {An Infinite Mixture Model for Coreference Resolution in Clinical Notes},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t006-1.3012375/f006-1.3012376/a228-1.3012395/a230-1.3012390},
timestamp = {Wed, 20 Jun 2018 17:09:02 +0200},
biburl = {https://dblp.org/rec/conf/cri/0002LCL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/0003WIL16,
author = {Saeed Mehrabi and
Yanshan Wang and
Donna M. Ihrke and
Hongfang Liu},
title = {Exploring Gaps of Family History Documentation in {EHR} for Precision
Medicine - {A} Case Study of Familial Hypercholesterolemia Ascertainment},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t003-1.3012832/f003-1.3012833/a030-1.3012900/a032-1.3012895},
timestamp = {Thu, 25 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/0003WIL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/SohnJWRL16,
author = {Sunghwan Sohn and
Young J. Juhn and
Chung{-}Il Wi and
Euijung Ryu and
Hongfang Liu},
title = {Ascertaining Asthma Predictive Index through Natural Language Processing},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t005-1.3012400/f005-1.3012401/a211-1.3012441/a213-1.3012436},
timestamp = {Thu, 25 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/SohnJWRL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cri/WangLWL16,
author = {Yanshan Wang and
Dingcheng Li and
Stephen T. Wu and
Hongfang Liu},
title = {{POS-MRF:} {A} Part-Of-Speech Weighted Markov Random Field Model for
Clinical Information Retrieval},
booktitle = {Summit on Clinical Research Informatics, {CRI} 2016, San Francisco,
CA, USA, March 21-24, 2016},
publisher = {{AMIA}},
year = {2016},
url = {http://knowledge.amia.org/amia-59309-cri2016-1.3011827/t005-1.3012400/f005-1.3012401/a219-1.3012421/a221-1.3012416},
timestamp = {Thu, 25 Jan 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cri/WangLWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ElayavilliRL16,
author = {Ravikumar Komandur Elayavilli and
Majid Rastegar{-}Mojarad and
Hongfang Liu},
editor = {Pankaj Jaiswal and
Robert Hoehndorf and
Cecilia N. Arighi and
Austin Meier},
title = {MutD - {A} PubMed Scale Resource for Protein Mutation-Disease Relations
through Bio-Medical Literature Mining},
booktitle = {Proceedings of the Joint International Conference on Biological Ontology
and BioCreative, Corvallis, Oregon, United States, August 1-4, 2016},
series = {{CEUR} Workshop Proceedings},
volume = {1747},
publisher = {CEUR-WS.org},
year = {2016},
url = {https://ceur-ws.org/Vol-1747/BT203\_ICBO2016.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:23 +0100},
biburl = {https://dblp.org/rec/conf/icbo/ElayavilliRL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/LiuCWL16,
author = {Sijia Liu and
Vipin Chaudhary and
Liwei Wang and
Hongfang Liu},
title = {LabLinker: Finding Links of Laboratory Test Results between Structured
Records and Clinical Notes},
booktitle = {2016 {IEEE} International Conference on Healthcare Informatics, {ICHI}
2016, Chicago, IL, USA, October 4-7, 2016},
pages = {302},
publisher = {{IEEE} Computer Society},
year = {2016},
url = {https://doi.org/10.1109/ICHI.2016.44},
doi = {10.1109/ICHI.2016.44},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/LiuCWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/WuTYWBHL16,
author = {Stephen T. Wu and
Tamara Timmons and
Amy Yates and
Meikun Wang and
Steven Bedrick and
William R. Hersh and
Hongfang Liu},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Thierry Declerck and
Sara Goggi and
Marko Grobelnik and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Asunci{\'{o}}n Moreno and
Jan Odijk and
Stelios Piperidis},
title = {On Developing Resources for Patient-level Information Retrieval},
booktitle = {Proceedings of the Tenth International Conference on Language Resources
and Evaluation {LREC} 2016, Portoro{\v{z}}, Slovenia, May 23-28, 2016},
publisher = {European Language Resources Association {(ELRA)}},
year = {2016},
url = {http://www.lrec-conf.org/proceedings/lrec2016/summaries/919.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/WuTYWBHL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lrec/WuWSLJ16,
author = {Stephen T. Wu and
Chung{-}Il Wi and
Sunghwan Sohn and
Hongfang Liu and
Young J. Juhn},
editor = {Nicoletta Calzolari and
Khalid Choukri and
Thierry Declerck and
Sara Goggi and
Marko Grobelnik and
Bente Maegaard and
Joseph Mariani and
H{\'{e}}l{\`{e}}ne Mazo and
Asunci{\'{o}}n Moreno and
Jan Odijk and
Stelios Piperidis},
title = {Staggered NLP-assisted refinement for Clinical Annotations of Chronic
Disease Events},
booktitle = {Proceedings of the Tenth International Conference on Language Resources
and Evaluation {LREC} 2016, Portoro{\v{z}}, Slovenia, May 23-28, 2016},
publisher = {European Language Resources Association {(ELRA)}},
year = {2016},
url = {http://www.lrec-conf.org/proceedings/lrec2016/summaries/589.html},
timestamp = {Mon, 19 Aug 2019 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/lrec/WuWSLJ16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/semeval/AfzalWL16,
author = {Naveed Afzal and
Yanshan Wang and
Hongfang Liu},
editor = {Steven Bethard and
Daniel M. Cer and
Marine Carpuat and
David Jurgens and
Preslav Nakov and
Torsten Zesch},
title = {MayoNLP at SemEval-2016 Task 1: Semantic Textual Similarity based
on Lexical Semantic Net and Deep Learning Semantic Model},
booktitle = {Proceedings of the 10th International Workshop on Semantic Evaluation,
SemEval@NAACL-HLT 2016, San Diego, CA, USA, June 16-17, 2016},
pages = {674--679},
publisher = {The Association for Computer Linguistics},
year = {2016},
url = {https://doi.org/10.18653/v1/s16-1103},
doi = {10.18653/V1/S16-1103},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/semeval/AfzalWL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/WangRELL16,
author = {Yanshan Wang and
Majid Rastegar{-}Mojarad and
Ravikumar Komandur Elayavilli and
Sijia Liu and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Angela Ellis},
title = {An Ensemble Model of Clinical Information Extraction and Information
Retrieval for Clinical Decision Support},
booktitle = {Proceedings of The Twenty-Fifth Text REtrieval Conference, {TREC}
2016, Gaithersburg, Maryland, USA, November 15-18, 2016},
series = {{NIST} Special Publication},
volume = {500-321},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2016},
url = {http://trec.nist.gov/pubs/trec25/papers/MayoNLPTeam-CL.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:25 +0100},
biburl = {https://dblp.org/rec/conf/trec/WangRELL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/vldb/OverbyRL16,
author = {Casey Lynnette Overby and
Louiqa Raschid and
Hongfang Liu},
editor = {Fusheng Wang and
Lixia Yao and
Gang Luo},
title = {Exploiting {HPO} to Predict a Ranked List of Phenotype Categories
for LiverTox Case Reports},
booktitle = {Data Management and Analytics for Medicine and Healthcare - Second
International Workshop, {DMAH} 2016, Held at {VLDB} 2016, New Delhi,
India, September 9, 2016, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {10186},
pages = {3--9},
year = {2016},
url = {https://doi.org/10.1007/978-3-319-57741-8\_1},
doi = {10.1007/978-3-319-57741-8\_1},
timestamp = {Wed, 16 Sep 2020 17:11:25 +0200},
biburl = {https://dblp.org/rec/conf/vldb/OverbyRL16.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WangL16c,
author = {Yanshan Wang and
Hongfang Liu},
title = {MatLM: a Matrix Formulation for Probabilistic Language Models},
journal = {CoRR},
volume = {abs/1610.00735},
year = {2016},
url = {http://arxiv.org/abs/1610.00735},
eprinttype = {arXiv},
eprint = {1610.00735},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/WangL16c.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/WangLCZ15,
author = {Liwei Wang and
Hongfang Liu and
Christopher G. Chute and
Qian Zhu},
title = {Cancer based pharmacogenomics network supported with scientific evidences:
from the view of drug repurposing},
journal = {BioData Min.},
volume = {8},
pages = {9},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0042-8},
doi = {10.1186/S13040-015-0042-8},
timestamp = {Mon, 21 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/WangLCZ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/LiOLL15,
author = {Dingcheng Li and
Janet Okamoto and
Hongfang Liu and
Scott Leischow},
title = {A bibliometric analysis on tobacco regulation investigators},
journal = {BioData Min.},
volume = {8},
pages = {11},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0043-7},
doi = {10.1186/S13040-015-0043-7},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/LiOLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/JiangLSC15,
author = {Guoqian Jiang and
Hongfang Liu and
Harold R. Solbrig and
Christopher G. Chute},
title = {Mining severe drug-drug interaction adverse events using Semantic
Web technologies: a case study},
journal = {BioData Min.},
volume = {8},
pages = {12},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0044-6},
doi = {10.1186/S13040-015-0044-6},
timestamp = {Wed, 01 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodatamining/JiangLSC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodatamining/ZhangZL15,
author = {Yuji Zhang and
Qian Zhu and
Hongfang Liu},
title = {Next generation informatics for big data in precision medicine era},
journal = {BioData Min.},
volume = {8},
pages = {34},
year = {2015},
url = {https://doi.org/10.1186/s13040-015-0064-2},
doi = {10.1186/S13040-015-0064-2},
timestamp = {Mon, 21 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodatamining/ZhangZL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RavikumarWLKL15,
author = {Ravikumar Komandur Elayavilli and
Kavishwar B. Wagholikar and
Dingcheng Li and
Jean{-}Pierre A. Kocher and
Hongfang Liu},
title = {Text mining facilitates database curation - extraction of mutation-disease
associations from Bio-medical literature},
journal = {{BMC} Bioinform.},
volume = {16},
pages = {185:1--185:15},
year = {2015},
url = {https://doi.org/10.1186/s12859-015-0609-x},
doi = {10.1186/S12859-015-0609-X},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/RavikumarWLKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/XuACLPDLSXRJLJW15,
author = {Hua Xu and
Melinda C. Aldrich and
Qingxia Chen and
Hongfang Liu and
Neeraja B. Peterson and
Qi Dai and
Mia A. Levy and
Anushi Shah and
Han Xue and
Xiaoyang Ruan and
Min Jiang and
Ying Li and
Jamii St Julien and
Jeremy L. Warner and
Carol Friedman and
Dan M. Roden and
Joshua C. Denny},
title = {Validating drug repurposing signals using electronic health records:
a case study of metformin associated with reduced cancer mortality},
journal = {J. Am. Medical Informatics Assoc.},
volume = {22},
number = {1},
pages = {179--191},
year = {2015},
url = {https://doi.org/10.1136/amiajnl-2014-002649},
doi = {10.1136/AMIAJNL-2014-002649},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/XuACLPDLSXRJLJW15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/MehrabiKSRSKBDS15,
author = {Saeed Mehrabi and
Anand Krishnan and
Sunghwan Sohn and
Alexandra M. Roch and
Heidi Schmidt and
Joe Kesterson and
Chris Beesley and
Paul R. Dexter and
C. Max Schmidt and
Hongfang Liu and
Mathew J. Palakal},
title = {{DEEPEN:} {A} negation detection system for clinical text incorporating
dependency relation into NegEx},
journal = {J. Biomed. Informatics},
volume = {54},
pages = {213--219},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.02.010},
doi = {10.1016/J.JBI.2015.02.010},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/MehrabiKSRSKBDS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhengVLWSUGBARP15,
author = {Kai Zheng and
V. G. Vinod Vydiswaran and
Yang Liu and
Yue Wang and
Amber Stubbs and
{\"{O}}zlem Uzuner and
Anupama E. Gururaj and
Samuel Bayer and
John S. Aberdeen and
Anna Rumshisky and
Serguei Pakhomov and
Hongfang Liu and
Hua Xu},
title = {Ease of adoption of clinical natural language processing software:
An evaluation of five systems},
journal = {J. Biomed. Informatics},
volume = {58},
pages = {S189--S196},
year = {2015},
url = {https://doi.org/10.1016/j.jbi.2015.07.008},
doi = {10.1016/J.JBI.2015.07.008},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/ZhengVLWSUGBARP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jcheminf/KrallingerRL15,
author = {Martin Krallinger and
Obdulia Rabal and
Florian Leitner and
Miguel Vazquez and
David Salgado and
Zhiyong Lu and
Robert Leaman and
Yanan Lu and
Donghong Ji and
Daniel M. Lowe and
Roger A. Sayle and
Riza Theresa Batista{-}Navarro and
Rafal Rak and
Torsten Huber and
Tim Rockt{\"{a}}schel and
S{\'{e}}rgio Matos and
David Campos and
Buzhou Tang and
Hua Xu and
Tsendsuren Munkhdalai and
Keun Ho Ryu and
S. V. Ramanan and
P. Senthil Nathan and
Slavko Zitnik and
Marko Bajec and
Lutz Weber and
Matthias Irmer and
Saber A. Akhondi and
Jan A. Kors and
Shuo Xu and
Xin An and
Utpal Kumar Sikdar and
Asif Ekbal and
Masaharu Yoshioka and
Thaer M. Dieb and
Miji Choi and
Karin Verspoor and
Madian Khabsa and
C. Lee Giles and
Hongfang Liu and
Ravikumar Komandur Elayavilli and
Andre Lamurias and
Francisco M. Couto and
Hong{-}Jie Dai and
Richard Tzong{-}Han Tsai and
Caglar Ata and
Tolga Can and
Anabel Usie and
Rui Alves and
Isabel Segura{-}Bedmar and
Paloma Mart{\'{\i}}nez and
Julen Oyarzabal and
Alfonso Valencia},
title = {The {CHEMDNER} corpus of chemicals and drugs and its annotation principles},
journal = {J. Cheminformatics},
volume = {7},
number = {{S-1}},
pages = {S2},
year = {2015},
url = {https://doi.org/10.1186/1758-2946-7-S1-S2},
doi = {10.1186/1758-2946-7-S1-S2},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jcheminf/KrallingerRL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/midm/ZhuLCF15,
author = {Qian Zhu and
Hongfang Liu and
Christopher G. Chute and
Matthew Ferber},
title = {{EHR} based Genetic Testing Knowledge Base (iGTKB) Development},
journal = {{BMC} Medical Informatics Decis. Mak.},
volume = {15-S},
number = {4},
pages = {S3},
year = {2015},
url = {https://doi.org/10.1186/1472-6947-15-s4-s3},
doi = {10.1186/1472-6947-15-S4-S3},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/midm/ZhuLCF15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiMYL15,
author = {Dingcheng Li and
Saeed Mehrabi and
Yue Yu and
Hongfang Liu},
title = {A Deep Learning Framework for Improving Medical Information Retrieval},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248964-1.2744974/2249166-1.2744971},
timestamp = {Wed, 17 Apr 2024 11:47:40 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiMYL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MacLaughlinEWSL15,
author = {Kathy L. MacLaughlin and
Ravikumar Komandur Elayavilli and
Kavishwar B. Wagholikar and
Marianne R. Scheitel and
Hongfang Liu and
Rajeev Chaudhry},
title = {Evaluation of the accuracy of {CDS} for cervical cancer screening
and surveillance},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248899-1.2744920/2249326-1.2744917},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MacLaughlinEWSL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/MehrabiSKL15,
author = {Saeed Mehrabi and
Mayya S. Safarova and
Iftikhar J. Kullo and
Hongfang Liu},
title = {Exploring Gaps of Family History Documentation in {EHR} for Precision
Medicine - {A} Case Study of Familial Hypercholesterolemia Ascertainment},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248802-1.2744858/2249228-1.2744855},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/MehrabiSKL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/Rastegar-Mojarad15,
author = {Majid Rastegar{-}Mojarad and
Hongfang Liu and
Priya Nambisan},
title = {Social Media use for Drug Repurposing: Understanding the consumer
perspective},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2237306-1.2744688/2248682-1.2744685},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/Rastegar-Mojarad15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RavikumarCMPSPH15,
author = {K. E. Ravikumar and
Rajeev Chaudhry and
James J. Masanz and
Joshua J. Pankratz and
Jane L. Shellum and
Steve G. Peters and
Ronald A. Hankey and
Daniel J. Cronk and
Jennifer J. Boysen and
Kristin Pavek and
Robert Roden and
Hongfang Liu},
title = {Natural Language Processing facilitates delivery of individualized
recommendations at the point of care},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2242603-1.2746119/2248843-1.2746116},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RavikumarCMPSPH15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/RavikumarCMPSPH15a,
author = {K. E. Ravikumar and
Rajeev Chaudhry and
James J. Masanz and
Joshua J. Pankratz and
Jane L. Shellum and
Steve G. Peters and
Ronald A. Hankey and
Daniel J. Cronk and
Jennifer J. Boysen and
Kristin Pavek and
Robert Roden and
Hongfang Liu},
title = {Natural Language Processing facilitates delivery of individualized
recommendations at the point of care},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248293-1.2745094/2249100-1.2745091},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/RavikumarCMPSPH15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ScheitelLSHPC15,
author = {Marianne R. Scheitel and
Hongfang Liu and
Jane L. Shellum and
Ronald A. Hankey and
Steve G. Peters and
Rajeev Chaudhry},
title = {Automating risk score calculations and care recommendations by an
{EMR} agnostic solution and potential time saving for providers},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248590-1.2744616/2245966-1.2744613},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ScheitelLSHPC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnRNHLL15,
author = {Sunghwan Sohn and
Majid Rastegar{-}Mojarad and
James M. Naessens and
Elizabeth B. Habermann and
David W. Larson and
Hongfang Liu},
title = {Detection of Colorectal Surgical Site Infections Using Bayesian Network
and Natural Language Processing},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t001-1.2745946/f001-1.2745947/2246467-1.2745993/2247184-1.2745990},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SohnRNHLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnRNHLL15a,
author = {Sunghwan Sohn and
Majid Rastegar{-}Mojarad and
James M. Naessens and
Elizabeth B. Habermann and
David W. Larson and
Hongfang Liu},
title = {Prediction of Colorectal Surgical Site Infections Using Risk Factors},
booktitle = {{AMIA} 2015, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2015},
publisher = {{AMIA}},
year = {2015},
url = {https://knowledge.amia.org/59310-amia-1.2741865/t005-1.2744350/f005-1.2744351/2248243-1.2744538/2247308-1.2744535},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SohnRNHLL15a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiREWMYSLAL15,
author = {Dingcheng Li and
Majid Rastegar{-}Mojarad and
Ravikumar Komandur Elayavilli and
Yanshan Wang and
Saeed Mehrabi and
Yue Yu and
Sunghwan Sohn and
Yanpeng Li and
Naveed Afzal and
Hongfang Liu},
title = {A frequency-filtering strategy of obtaining PHI-free sentences from
clinical data repository},
booktitle = {Proceedings of the 6th {ACM} Conference on Bioinformatics, Computational
Biology and Health Informatics, {BCB} 2015, Atlanta, GA, USA, September
9-12, 2015},
pages = {315--324},
publisher = {{ACM}},
year = {2015},
url = {https://doi.org/10.1145/2808719.2808752},
doi = {10.1145/2808719.2808752},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bcb/LiREWMYSLAL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/Rastegar-Mojarad15,
author = {Majid Rastegar{-}Mojarad and
Ravikumar Komandur Elayavilli and
Dingcheng Li and
Rashmi Prasad and
Hongfang Liu},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {A new method for prioritizing drug repositioning candidates extracted
by literature-based discovery},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {669--674},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359766},
doi = {10.1109/BIBM.2015.7359766},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/Rastegar-Mojarad15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ShenLSLL15,
author = {Feichen Shen and
Hongfang Liu and
Sunghwan Sohn and
David W. Larson and
Yugyung Lee},
editor = {Jun Huan and
Satoru Miyano and
Amarda Shehu and
Xiaohua Tony Hu and
Bin Ma and
Sanguthevar Rajasekaran and
Vijay K. Gombar and
Matthieu{-}P. Schapranow and
Illhoi Yoo and
Jiayu Zhou and
Brian Chen and
Vinay Pai and
Brian G. Pierce},
title = {BmQGen: Biomedical query generator for knowledge discovery},
booktitle = {2015 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2015, Washington, DC, USA, November 9-12, 2015},
pages = {1092--1097},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/BIBM.2015.7359833},
doi = {10.1109/BIBM.2015.7359833},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/ShenLSLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bionlp/HongLYLCJ15,
author = {Na Hong and
Dingcheng Li and
Yue Yu and
Hongfang Liu and
Christopher G. Chute and
Guoqian Jiang},
editor = {Kevin Bretonnel Cohen and
Dina Demner{-}Fushman and
Sophia Ananiadou and
Jun'ichi Tsujii},
title = {Representing Clinical Diagnostic Criteria in Quality Data Model Using
Natural Language Processing},
booktitle = {Proceedings of the Workshop on Biomedical Natural Language Processing,
BioNLP@IJCNLP 2015, Beijing, China, July 30, 2015},
pages = {177--182},
publisher = {Association for Computational Linguistics},
year = {2015},
url = {https://doi.org/10.18653/v1/W15-3823},
doi = {10.18653/V1/W15-3823},
timestamp = {Fri, 06 Aug 2021 00:41:21 +0200},
biburl = {https://dblp.org/rec/conf/bionlp/HongLYLCJ15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/MehrabiSLPTSLP15,
author = {Saeed Mehrabi and
Sunghwan Sohn and
Dingcheng Li and
Joshua J. Pankratz and
Terry M. Therneau and
Jennifer L. St. Sauver and
Hongfang Liu and
Mathew J. Palakal},
editor = {Prabhakaran Balakrishnan and
Jaideep Srivatsava and
Wai{-}Tat Fu and
Sanda M. Harabagiu and
Fei Wang},
title = {Temporal Pattern and Association Discovery of Diagnosis Codes Using
Deep Learning},
booktitle = {2015 International Conference on Healthcare Informatics, {ICHI} 2015,
Dallas, TX, USA, October 21-23, 2015},
pages = {408--416},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/ICHI.2015.58},
doi = {10.1109/ICHI.2015.58},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/MehrabiSLPTSLP15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ichi/WangMRLL15,
author = {Yanshan Wang and
Saeed Mehrabi and
Majid Rastegar{-}Mojarad and
Dingcheng Li and
Hongfang Liu},
editor = {Prabhakaran Balakrishnan and
Jaideep Srivatsava and
Wai{-}Tat Fu and
Sanda M. Harabagiu and
Fei Wang},
title = {Retrieval of Semantically Similar Healthcare Questions in Healthcare
Forums},
booktitle = {2015 International Conference on Healthcare Informatics, {ICHI} 2015,
Dallas, TX, USA, October 21-23, 2015},
pages = {517--518},
publisher = {{IEEE} Computer Society},
year = {2015},
url = {https://doi.org/10.1109/ICHI.2015.97},
doi = {10.1109/ICHI.2015.97},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ichi/WangMRLL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/Rastegar-Mojarad15,
author = {Majid Rastegar{-}Mojarad and
Ravikumar Komandur Elayavilli and
Dingcheng Li and
Hongfang Liu},
editor = {Indra Neil Sarkar and
Andrew Georgiou and
Paulo Mazzoncini de Azevedo Marques},
title = {Assessing the Need of Discourse-Level Analysis in Identifying Evidence
of Drug-Disease Relations in Scientific Literature},
booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
19-23 August 2015},
series = {Studies in Health Technology and Informatics},
volume = {216},
pages = {539--543},
publisher = {{IOS} Press},
year = {2015},
url = {https://doi.org/10.3233/978-1-61499-564-7-539},
doi = {10.3233/978-1-61499-564-7-539},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/Rastegar-Mojarad15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/MehrabiKRSLKBDS15,
author = {Saeed Mehrabi and
Anand Krishnan and
Alexandra M. Roch and
Heidi Schmidt and
Dingcheng Li and
Joe Kesterson and
Chris Beesley and
Paul R. Dexter and
C. Max Schmidt and
Mathew J. Palakal and
Hongfang Liu},
editor = {Indra Neil Sarkar and
Andrew Georgiou and
Paulo Mazzoncini de Azevedo Marques},
title = {Identification of Patients with Family History of Pancreatic Cancer
- Investigation of an {NLP} System Portability},
booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
19-23 August 2015},
series = {Studies in Health Technology and Informatics},
volume = {216},
pages = {604--608},
publisher = {{IOS} Press},
year = {2015},
url = {https://doi.org/10.3233/978-1-61499-564-7-604},
doi = {10.3233/978-1-61499-564-7-604},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/MehrabiKRSLKBDS15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/LiRLSMEYL15,
author = {Dingcheng Li and
Majid Rastegar{-}Mojarad and
Yanpeng Li and
Sunghwan Sohn and
Saeed Mehrabi and
Ravikumar Komandur Elayavilli and
Yue Yu and
Hongfang Liu},
editor = {Indra Neil Sarkar and
Andrew Georgiou and
Paulo Mazzoncini de Azevedo Marques},
title = {A Frequency-based Strategy of Obtaining Sentences from Clinical Data
Repository for Crowdsourcing},
booktitle = {{MEDINFO} 2015: eHealth-enabled Health - Proceedings of the 15th World
Congress on Health and Biomedical Informatics, S{\~{a}}o Paulo, Brazil,
19-23 August 2015},
series = {Studies in Health Technology and Informatics},
volume = {216},
pages = {1033--1034},
publisher = {{IOS} Press},
year = {2015},
url = {https://doi.org/10.3233/978-1-61499-564-7-1033},
doi = {10.3233/978-1-61499-564-7-1033},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/LiRLSMEYL15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/corr/WangLLC15,
author = {Yanshan Wang and
Dingcheng Li and
Hongfang Liu and
In{-}Chan Choi},
title = {Generalized Ensemble Model for Document Ranking},
journal = {CoRR},
volume = {abs/1507.08586},
year = {2015},
url = {http://arxiv.org/abs/1507.08586},
eprinttype = {arXiv},
eprint = {1507.08586},
timestamp = {Mon, 13 Aug 2018 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/corr/WangLLC15.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/MaoALAMHTSLWGRLKCCYLZLYEGCDL14,
author = {Yuqing Mao and
Kimberly Van Auken and
Donghui Li and
Cecilia N. Arighi and
Peter McQuilton and
G. Thomas Hayman and
Susan Tweedie and
Mary L. Schaeffer and
Stanley J. F. Laulederkind and
Shur{-}Jen Wang and
Julien Gobeill and
Patrick Ruch and
Anh Tuan Luu and
Jung{-}Jae Kim and
Jung{-}Hsien Chiang and
Yu{-}De Chen and
Chia{-}Jung Yang and
Hongfang Liu and
Dongqing Zhu and
Yanpeng Li and
Hong Yu and
Ehsan Emadzadeh and
Graciela Gonzalez and
Jian{-}Ming Chen and
Hong{-}Jie Dai and
Zhiyong Lu},
title = {Overview of the gene ontology task at BioCreative {IV}},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau086},
doi = {10.1093/DATABASE/BAU086},
timestamp = {Mon, 05 Feb 2024 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/biodb/MaoALAMHTSLWGRLKCCYLZLYEGCDL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biodb/ZhuLCL14,
author = {Dongqing Zhu and
Dingcheng Li and
Ben Carterette and
Hongfang Liu},
title = {Integrating information retrieval with distant supervision for Gene
Ontology annotation},
journal = {Database J. Biol. Databases Curation},
volume = {2014},
year = {2014},
url = {https://doi.org/10.1093/database/bau087},
doi = {10.1093/DATABASE/BAU087},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biodb/ZhuLCL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ToriiWL14,
author = {Manabu Torii and
Kavishwar B. Wagholikar and
Hongfang Liu},
title = {Detecting concept mentions in biomedical text using hidden Markov
model: multiple concept types at once or one at a time?},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {3},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-3},
doi = {10.1186/2041-1480-5-3},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ToriiWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ZhangTJNSCL14,
author = {Yuji Zhang and
Cui Tao and
Guoqian Jiang and
Asha A. Nair and
Jian Su and
Christopher G. Chute and
Hongfang Liu},
title = {Network-based analysis reveals distinct association patterns in a
semantic MEDLINE-based drug-disease-gene network},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {33},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-33},
doi = {10.1186/2041-1480-5-33},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ZhangTJNSCL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WangJLL14,
author = {Liwei Wang and
Guoqian Jiang and
Dingcheng Li and
Hongfang Liu},
title = {Standardizing adverse drug event reporting data},
journal = {J. Biomed. Semant.},
volume = {5},
pages = {36},
year = {2014},
url = {https://doi.org/10.1186/2041-1480-5-36},
doi = {10.1186/2041-1480-5-36},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/WangJLL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SohnCHMCL14,
author = {Sunghwan Sohn and
Cheryl Clark and
Scott R. Halgrim and
Sean P. Murphy and
Christopher G. Chute and
Hongfang Liu},
title = {Research and applications: MedXN: an open source medication extraction
and normalization tool for clinical text},
journal = {J. Am. Medical Informatics Assoc.},
volume = {21},
number = {5},
pages = {858--865},
year = {2014},
url = {https://doi.org/10.1136/amiajnl-2013-002190},
doi = {10.1136/AMIAJNL-2013-002190},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SohnCHMCL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WuJSL14,
author = {Stephen T. Wu and
Young J. Juhn and
Sunghwan Sohn and
Hongfang Liu},
title = {Research and applications: Patient-level temporal aggregation for
text-based asthma status ascertainment},
journal = {J. Am. Medical Informatics Assoc.},
volume = {21},
number = {5},
pages = {876--884},
year = {2014},
url = {https://doi.org/10.1136/amiajnl-2013-002463},
doi = {10.1136/AMIAJNL-2013-002463},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WuJSL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhuWCL14,
author = {Dongqing Zhu and
Stephen T. Wu and
Ben Carterette and
Hongfang Liu},
title = {Using large clinical corpora for query expansion in text-based cohort
identification},
journal = {J. Biomed. Informatics},
volume = {49},
pages = {275--281},
year = {2014},
url = {https://doi.org/10.1016/j.jbi.2014.03.010},
doi = {10.1016/J.JBI.2014.03.010},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/ZhuWCL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jdim/XuQL14,
author = {Guixian Xu and
Lirong Qiu and
Hongfang Liu},
title = {Study on Hot Topic Discovery from Chinese Texts},
journal = {J. Digit. Inf. Manag.},
volume = {12},
number = {4},
pages = {267--273},
year = {2014},
url = {http://dline.info/fpaper/jdim/v12i4/5.pdf},
timestamp = {Sat, 25 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jdim/XuQL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ElayavilliWL14,
author = {Ravikumar Komandur Elayavilli and
Kavishwar B. Wagholikar and
Hongfang Liu},
title = {{NLP} enhances Quality Care Measures in Heart Failure},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-383-1.1544522/a-384-1.1544519},
timestamp = {Wed, 17 Apr 2024 11:47:48 +0200},
biburl = {https://dblp.org/rec/conf/amia/ElayavilliWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JonnalagaddaMNL14,
author = {Siddhartha Jonnalagadda and
Soheil Moosavinasab and
Chinmoy Nath and
Dingcheng Li and
Christopher G. Chute and
Hongfang Liu},
title = {An Automated Approach for Ranking Journals to Help in Clinician Decision
Support},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-173-1.1545154/a-174-1.1545151},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/JonnalagaddaMNL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiWSML14,
author = {Dingcheng Li and
Zhen Wang and
Feichen Shen and
Mohammad Hassan Murad and
Hongfang Liu},
title = {Reducing the Screening Burden of Systematic Review with a Multiple-level
Relevance Ranking System},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-422-1.1544405/a-423-1.1544402},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiWSML14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnL14,
author = {Sunghwan Sohn and
Hongfang Liu},
title = {Analysis of Medication and Indication Occurrences in Clinical Notes},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-004-1.1544972/f-004-1.1544973/a-205-1.1545058/a-206-1.1545055},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SohnL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnL14a,
author = {Sunghwan Sohn and
Hongfang Liu},
title = {Exploration of Potential Drug Off-label Uses in Clinical Practice},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-520-1.1544111/a-521-1.1544108},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SohnL14a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WuLML14,
author = {Stephen T. Wu and
Dingcheng Li and
James J. Masanz and
Hongfang Liu},
title = {Layered Spaces for Clinical Information Retrieval},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-001-1.1545410/f-001-1.1545411/a-084-1.1545427/a-085-1.1545424},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WuLML14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ZhuLCF14,
author = {Qian Zhu and
Hongfang Liu and
Christopher G. Chute and
Matthew Ferber},
title = {iGenetics: An Individualized Genetic Test Recommendation System Based
on EHRs},
booktitle = {{AMIA} 2014, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 15-19, 2014},
publisher = {{AMIA}},
year = {2014},
url = {https://knowledge.amia.org/56638-amia-1.1540970/t-005-1.1543914/f-005-1.1543915/a-582-1.1543925/a-583-1.1543922},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/ZhuLCF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/RavikumarWL14,
author = {K. E. Ravikumar and
Kavishwar B. Wagholikar and
Hongfang Liu},
editor = {Pierre Baldi and
Wei Wang},
title = {Challenges in adapting text mining for full text articles to assist
pathway curation},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {551--558},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2649444},
doi = {10.1145/2649387.2649444},
timestamp = {Tue, 06 Nov 2018 16:59:10 +0100},
biburl = {https://dblp.org/rec/conf/bcb/RavikumarWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/LiOLL14,
author = {Dingcheng Li and
Janet Okamoto and
Hongfang Liu and
Scott Leischow},
editor = {Pierre Baldi and
Wei Wang},
title = {An author topic analysis on {NCI} {DCP/DCCPS} PIs},
booktitle = {Proceedings of the 5th {ACM} Conference on Bioinformatics, Computational
Biology, and Health Informatics, {BCB} '14, Newport Beach, California,
USA, September 20-23, 2014},
pages = {607--608},
publisher = {{ACM}},
year = {2014},
url = {https://doi.org/10.1145/2649387.2660798},
doi = {10.1145/2649387.2660798},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/LiOLL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bhi/ShenLLLPCT14,
author = {Feichen Shen and
Dingcheng Li and
Hongfang Liu and
Yugyung Lee and
Jyotishman Pathak and
Christopher G. Chute and
Cui Tao},
title = {Using semantic web technologies for quality measure phenotyping algorithm
representation and automatic execution on {EHR} data},
booktitle = {Proceedings of {IEEE-EMBS} International Conference on Biomedical
and Health Informatics, {BHI} 2014, Valencia, Spain, June 1-4, 2014},
pages = {531--534},
publisher = {{IEEE}},
year = {2014},
url = {https://doi.org/10.1109/BHI.2014.6864419},
doi = {10.1109/BHI.2014.6864419},
timestamp = {Wed, 16 Oct 2019 14:14:51 +0200},
biburl = {https://dblp.org/rec/conf/bhi/ShenLLLPCT14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LiWSML14,
author = {Dingcheng Li and
Zhen Wang and
Feichen Shen and
Mohammad Hassan Murad and
Hongfang Liu},
editor = {Huiru Jane Zheng and
Werner Dubitzky and
Xiaohua Hu and
Jin{-}Kao Hao and
Daniel P. Berrar and
Kwang{-}Hyun Cho and
Yadong Wang and
David R. Gilbert},
title = {Towards a multi-level framework for supporting systematic review -
{A} pilot study},
booktitle = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014},
pages = {43--50},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/BIBM.2014.6999266},
doi = {10.1109/BIBM.2014.6999266},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LiWSML14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhuLCF14,
author = {Qian Zhu and
Hongfang Liu and
Christopher G. Chute and
Matthew Ferber},
editor = {Huiru Jane Zheng and
Werner Dubitzky and
Xiaohua Hu and
Jin{-}Kao Hao and
Daniel P. Berrar and
Kwang{-}Hyun Cho and
Yadong Wang and
David R. Gilbert},
title = {Genetic testing knowledge base {(GTKB)} towards individualized genetic
test recommendation - An experimental study},
booktitle = {2014 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2014, Belfast, United Kingdom, November 2-5, 2014},
pages = {574--577},
publisher = {{IEEE} Computer Society},
year = {2014},
url = {https://doi.org/10.1109/BIBM.2014.6999223},
doi = {10.1109/BIBM.2014.6999223},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/ZhuLCF14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/LiOLL14,
author = {Dingcheng Li and
Janet Okamoto and
Scott Leischow and
Hongfang Liu},
editor = {Wen{-}Chih Peng and
Haixun Wang and
James Bailey and
Vincent S. Tseng and
Tu Bao Ho and
Zhi{-}Hua Zhou and
Arbee L. P. Chen},
title = {An Author Topic Analysis of Tobacco Regulation Investigators},
booktitle = {Trends and Applications in Knowledge Discovery and Data Mining - {PAKDD}
2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD,
MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA,Tainan, Taiwan,
May 13-16, 2014. Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8643},
pages = {616--627},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-13186-3\_55},
doi = {10.1007/978-3-319-13186-3\_55},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/pakdd/LiOLL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/JiangLSC14,
author = {Guoqian Jiang and
Hongfang Liu and
Harold R. Solbrig and
Christopher G. Chute},
editor = {Wen{-}Chih Peng and
Haixun Wang and
James Bailey and
Vincent S. Tseng and
Tu Bao Ho and
Zhi{-}Hua Zhou and
Arbee L. P. Chen},
title = {Mining Severe Drug-Drug Interaction Adverse Events Using Semantic
Web Technologies: {A} Case Study},
booktitle = {Trends and Applications in Knowledge Discovery and Data Mining - {PAKDD}
2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD,
MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA,Tainan, Taiwan,
May 13-16, 2014. Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8643},
pages = {628--638},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-13186-3\_56},
doi = {10.1007/978-3-319-13186-3\_56},
timestamp = {Thu, 25 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/pakdd/JiangLSC14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/WangLCZ14,
author = {Liwei Wang and
Hongfang Liu and
Christopher G. Chute and
Qian Zhu},
editor = {Wen{-}Chih Peng and
Haixun Wang and
James Bailey and
Vincent S. Tseng and
Tu Bao Ho and
Zhi{-}Hua Zhou and
Arbee L. P. Chen},
title = {Cancer Based Pharmacogenomics Network for Drug Repurposing},
booktitle = {Trends and Applications in Knowledge Discovery and Data Mining - {PAKDD}
2014 International Workshops: DANTH, BDM, MobiSocial, BigEC, CloudSD,
MSMV-MBI, SDA, DMDA-Health, ALSIP, SocNet, DMBIH, BigPMA,Tainan, Taiwan,
May 13-16, 2014. Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {8643},
pages = {639--651},
publisher = {Springer},
year = {2014},
url = {https://doi.org/10.1007/978-3-319-13186-3\_57},
doi = {10.1007/978-3-319-13186-3\_57},
timestamp = {Mon, 21 Feb 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/pakdd/WangLCZ14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/RavikumarWL14,
author = {K. E. Ravikumar and
Kavishwar B. Wagholikar and
Hongfang Liu},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein and
Marylyn D. Ritchie},
title = {Towards Pathway Curation Through Literature Mining - {A} Case Study
Using PharmGKB},
booktitle = {Biocomputing 2014: Proceedings of the Pacific Symposium, Kohala Coast,
Hawaii, USA, January 3-7, 2014},
pages = {352--363},
year = {2014},
url = {http://psb.stanford.edu/psb-online/proceedings/psb14/ravikumarke.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/RavikumarWL14.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WuKDMCBCSLC13,
author = {Stephen T. Wu and
Vinod Kaggal and
Dmitriy Dligach and
James J. Masanz and
Pei J. Chen and
Lee Becker and
Wendy Webber Chapman and
Guergana K. Savova and
Hongfang Liu and
Christopher G. Chute},
title = {A common type system for clinical natural language processing},
journal = {J. Biomed. Semant.},
volume = {4},
pages = {1},
year = {2013},
url = {https://doi.org/10.1186/2041-1480-4-1},
doi = {10.1186/2041-1480-4-1},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/WuKDMCBCSLC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/WagholikarTJL13,
author = {Kavishwar B. Wagholikar and
Manabu Torii and
Siddhartha Jonnalagadda and
Hongfang Liu},
title = {Pooling annotated corpora for clinical concept extraction},
journal = {J. Biomed. Semant.},
volume = {4},
pages = {3},
year = {2013},
url = {https://doi.org/10.1186/2041-1480-4-3},
doi = {10.1186/2041-1480-4-3},
timestamp = {Thu, 13 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/WagholikarTJL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/biomedsem/ZhangTHKL13,
author = {Yuji Zhang and
Cui Tao and
Yongqun He and
Pradip Kanjamala and
Hongfang Liu},
title = {Network-based analysis of vaccine-related associations reveals consistent
knowledge with the vaccine ontology},
journal = {J. Biomed. Semant.},
volume = {4},
pages = {33},
year = {2013},
url = {https://doi.org/10.1186/2041-1480-4-33},
doi = {10.1186/2041-1480-4-33},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/biomedsem/ZhangTHKL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WagholikarMKCHGLC13,
author = {Kavishwar B. Wagholikar and
Kathy L. MacLaughlin and
Thomas M. Kastner and
Petra M. Casey and
Michael R. Henry and
Robert A. Greenes and
Hongfang Liu and
Rajeev Chaudhry},
title = {Research and applications: Formative evaluation of the accuracy of
a clinical decision support system for cervical cancer screening},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {4},
pages = {749--757},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2013-001613},
doi = {10.1136/AMIAJNL-2013-001613},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/WagholikarMKCHGLC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/SohnWLJTEL13,
author = {Sunghwan Sohn and
Kavishwar B. Wagholikar and
Dingcheng Li and
Siddhartha Jonnalagadda and
Cui Tao and
Ravikumar Komandur Elayavilli and
Hongfang Liu},
title = {Comprehensive temporal information detection from clinical text: medical
events, time, and {TLINK} identification},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {5},
pages = {836--842},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2013-001622},
doi = {10.1136/AMIAJNL-2013-001622},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/SohnWLJTEL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/JonnalagaddaFMWFML13,
author = {Siddhartha Jonnalagadda and
Guilherme Del Fiol and
Richard Medlin and
Charlene R. Weir and
Marcelo Fiszman and
Javed Mostafa and
Hongfang Liu},
title = {Automatically extracting sentences from Medline citations to support
clinicians' information needs},
journal = {J. Am. Medical Informatics Assoc.},
volume = {20},
number = {5},
pages = {995--1000},
year = {2013},
url = {https://doi.org/10.1136/amiajnl-2012-001347},
doi = {10.1136/AMIAJNL-2012-001347},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/JonnalagaddaFMWFML13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/JonnalagaddaCL13,
author = {Siddhartha Jonnalagadda and
Christopher G. Chute and
Hongfang Liu},
title = {Prioritize journals relevant to a clinical topic: {A} survey of {US}
cardiologists about heart failure},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-243-1.583280/a-244-1.583274},
timestamp = {Wed, 17 Apr 2024 11:47:55 +0200},
biburl = {https://dblp.org/rec/conf/amia/JonnalagaddaCL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiWTCL13,
author = {Dingcheng Li and
Liwei Wang and
Cui Tao and
Christopher G. Chute and
Hongfang Liu},
title = {Coreference Resolution from Medical Corpus with Topic Modeling},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-299-1.583088/a-300-1.583082},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiWTCL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnCHMCL13,
author = {Sunghwan Sohn and
Cheryl Clark and
Scott R. Halgrim and
Sean P. Murphy and
Christopher G. Chute and
Hongfang Liu},
title = {Medication Extraction and Normalization from Clinical Notes},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-02-1.584671/f-002-1.584672/a-489-1.584729/a-492-1.584726},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SohnCHMCL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/SohnCHMCL13a,
author = {Sunghwan Sohn and
Cheryl Clark and
Scott R. Halgrim and
Sean P. Murphy and
Christopher G. Chute and
Hongfang Liu},
title = {Clinical Drug Extraction and Normalization from Clinical Notes},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-491-1.582514/a-493-1.582511},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/SohnCHMCL13a.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WagholikarHLC13,
author = {Kavishwar B. Wagholikar and
Ronald A. Hankey and
Hongfang Liu and
Rajeev Chaudhry},
title = {Decision Support can Improve Time Efficiency of Healthcare Providers
for Deciding Preventive Care Recommendations},
booktitle = {{AMIA} 2013, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 16-20, 2013},
publisher = {{AMIA}},
year = {2013},
url = {https://knowledge.amia.org/amia-55142-a2013e-1.580047/t-06-1.582200/f-006-1.582201/a-536-1.582381/a-537-1.582375},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WagholikarHLC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/JonnalagaddaMLACL13,
author = {Siddhartha Jonnalagadda and
Soheil Moosavinasab and
Dingcheng Li and
Martin D. Abel and
Christopher G. Chute and
Hongfang Liu},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {Prioritizing journals relevant to a topic for addressing clinicians'
information needs},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {5--6},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732590},
doi = {10.1109/BIBM.2013.6732590},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/JonnalagaddaMLACL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/WangL13,
author = {Liwei Wang and
Hongfang Liu},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {Profiling adverse drug events of cancer drug ingredients using normalized
{AERS} data},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {46--52},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732599},
doi = {10.1109/BIBM.2013.6732599},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/WangL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ZhangLTSL13,
author = {Yuji Zhang and
Dingcheng Li and
Cui Tao and
Feichen Shen and
Hongfang Liu},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {An integrative computational approach to identify disease-specific
networks from PubMed literature information},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {72--75},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732738},
doi = {10.1109/BIBM.2013.6732738},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/ZhangLTSL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/LiLCJ13,
author = {Dingcheng Li and
Hongfang Liu and
Christopher G. Chute and
Siddhartha Jonnalagadda},
editor = {Guo{-}Zheng Li and
Sunghoon Kim and
Michael Hughes and
Geoffrey J. McLachlan and
Hongye Sun and
Xiaohua Hu and
Habtom W. Ressom and
Baoyan Liu and
Michael N. Liebman},
title = {Towards assigning references using semantic, journal and citation
relevance},
booktitle = {2013 {IEEE} International Conference on Bioinformatics and Biomedicine,
Shanghai, China, December 18-21, 2013},
pages = {499--503},
publisher = {{IEEE} Computer Society},
year = {2013},
url = {https://doi.org/10.1109/BIBM.2013.6732545},
doi = {10.1109/BIBM.2013.6732545},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/LiLCJ13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/LiuWJS13,
author = {Hongfang Liu and
Kavishwar B. Wagholikar and
Siddhartha Jonnalagadda and
Sunghwan Sohn},
editor = {Pamela Forner and
Roberto Navigli and
Dan Tufis and
Nicola Ferro},
title = {Integrated cTAKES for Concept Mention Detection and Normalization},
booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
23-26, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1179},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFeHealth-LiuEt2013.pdf},
timestamp = {Fri, 10 Mar 2023 16:23:37 +0100},
biburl = {https://dblp.org/rec/conf/clef/LiuWJS13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/ZhuLCL13,
author = {Dongqing Zhu and
Dingcheng Li and
Ben Carterette and
Hongfang Liu},
editor = {Axel{-}Cyrille Ngonga Ngomo and
George Paliouras},
title = {An Incremental Approach for {MEDLINE} MeSH Indexing},
booktitle = {Proceedings of the first Workshop on Bio-Medical Semantic Indexing
and Question Answering, a Post-Conference Workshop of Conference and
Labs of the Evaluation Forum 2013 {(CLEF} 2013) , Valencia, Spain,
September 27th, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1094},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1094/bioasq2013\_submission\_7.pdf},
timestamp = {Mon, 26 Jun 2023 20:45:18 +0200},
biburl = {https://dblp.org/rec/conf/clef/ZhuLCL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/clef/ZhuWMCL13,
author = {Dongqing Zhu and
Stephen T. Wu and
James J. Masanz and
Ben Carterette and
Hongfang Liu},
editor = {Pamela Forner and
Roberto Navigli and
Dan Tufis and
Nicola Ferro},
title = {Using Discharge Summaries to Improve Information Retrieval in Clinical
Domain},
booktitle = {Working Notes for {CLEF} 2013 Conference , Valencia, Spain, September
23-26, 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1179},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1179/CLEF2013wn-CLEFeHealth-ZhuEt2013.pdf},
timestamp = {Fri, 10 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/clef/ZhuWMCL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icbo/ZhangTHKL13,
author = {Yuji Zhang and
Cui Tao and
Yongqun He and
Pradip Kanjamala and
Hongfang Liu},
editor = {Cui Tao and
Yongqun He and
Luca Toldo and
Sivaram Arabandi and
Selja Sepp{\"{a}}l{\"{a}} and
Alan Ruttenberg},
title = {Analysis of Vaccine-related Networks using Semantic {MEDLINE} and
the Vaccine Ontology},
booktitle = {Proceedings of the {ICBO2013} Workshops: International Workshop on
Vaccine and Drug Ontology Studies {(VDOS} 2013), International Workshop
on Definitions in Ontologies {(DO} 2013), part of the Semantic Trilogy
2013 , Montreal, Quebec, Canada, July 6th - 12th 2013},
series = {{CEUR} Workshop Proceedings},
volume = {1061},
publisher = {CEUR-WS.org},
year = {2013},
url = {https://ceur-ws.org/Vol-1061/Paper6\_vdos2013.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:24 +0100},
biburl = {https://dblp.org/rec/conf/icbo/ZhangTHKL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icsh/TaoLSLPLC13,
author = {Cui Tao and
Dingcheng Li and
Feichen Shen and
Zonghui Lian and
Jyotishman Pathak and
Hongfang Liu and
Christopher G. Chute},
editor = {Daniel Zeng and
Christopher C. Yang and
Vincent S. Tseng and
Chunxiao Xing and
Hsinchun Chen and
Fei{-}Yue Wang and
Xiaolong Zheng},
title = {Phenotyping on {EHR} Data Using {OWL} and Semantic Web Technologies},
booktitle = {Smart Health - International Conference, {ICSH} 2013, Beijing, China,
August 3-4, 2013. Proceedings},
series = {Lecture Notes in Computer Science},
volume = {8040},
pages = {31--32},
publisher = {Springer},
year = {2013},
url = {https://doi.org/10.1007/978-3-642-39844-5\_5},
doi = {10.1007/978-3-642-39844-5\_5},
timestamp = {Mon, 15 May 2023 16:24:40 +0200},
biburl = {https://dblp.org/rec/conf/icsh/TaoLSLPLC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/JiangWLSC13,
author = {Guoqian Jiang and
Liwei Wang and
Hongfang Liu and
Harold R. Solbrig and
Christopher G. Chute},
editor = {Christoph Ulrich Lehmann and
Elske Ammenwerth and
Christian N{\o}hr},
title = {Building a Knowledge Base of Severe Adverse Drug Events Based on {AERS}
Reporting Data Using Semantic Web Technologies},
booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
series = {Studies in Health Technology and Informatics},
volume = {192},
pages = {496--500},
publisher = {{IOS} Press},
year = {2013},
url = {https://doi.org/10.3233/978-1-61499-289-9-496},
doi = {10.3233/978-1-61499-289-9-496},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/JiangWLSC13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/ZhangFGJMMWLMF13,
author = {Mingyuan Zhang and
Guilherme Del Fiol and
Randall Grout and
Siddhartha Jonnalagadda and
Richard Medlin and
Rashmi Mishra and
Charlene R. Weir and
Hongfang Liu and
Javed Mostafa and
Marcelo Fiszman},
editor = {Christoph Ulrich Lehmann and
Elske Ammenwerth and
Christian N{\o}hr},
title = {Automatic Identification of Comparative Effectiveness Research from
Medline Citations to Support Clinicians' Treatment Information Needs},
booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
series = {Studies in Health Technology and Informatics},
volume = {192},
pages = {846--850},
publisher = {{IOS} Press},
year = {2013},
url = {https://doi.org/10.3233/978-1-61499-289-9-846},
doi = {10.3233/978-1-61499-289-9-846},
timestamp = {Thu, 23 Jun 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/ZhangFGJMMWLMF13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/WangJLL13,
author = {Liwei Wang and
Guoqian Jiang and
Dingcheng Li and
Hongfang Liu},
editor = {Christoph Ulrich Lehmann and
Elske Ammenwerth and
Christian N{\o}hr},
title = {Standardizing Drug Adverse Event Reporting Data},
booktitle = {{MEDINFO} 2013 - Proceedings of the 14th World Congress on Medical
and Health Informatics, 20-13 August 2013, Copenhagen, Denmark},
series = {Studies in Health Technology and Informatics},
volume = {192},
pages = {1101},
publisher = {{IOS} Press},
year = {2013},
url = {https://doi.org/10.3233/978-1-61499-289-9-1101},
doi = {10.3233/978-1-61499-289-9-1101},
timestamp = {Wed, 03 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/medinfo/WangJLL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/starsem/WuZCL13,
author = {Stephen T. Wu and
Dongqing Zhu and
Ben Carterette and
Hongfang Liu},
editor = {Mona T. Diab and
Timothy Baldwin and
Marco Baroni},
title = {MayoClinicNLP-CORE: Semantic representations for textual similarity},
booktitle = {Proceedings of the Second Joint Conference on Lexical and Computational
Semantics, *SEM 2013, June 13-14, 2013, Atlanta, Georgia, {USA}},
pages = {148--154},
publisher = {Association for Computational Linguistics},
year = {2013},
url = {https://aclanthology.org/S13-1021/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/starsem/WuZCL13.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WagholikarMHGHLC12,
author = {Kavishwar B. Wagholikar and
Kathy L. MacLaughlin and
Michael R. Henry and
Robert A. Greenes and
Ronald A. Hankey and
Hongfang Liu and
Rajeev Chaudhry},
title = {Clinical decision support with automated text processing for cervical
cancer screening},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {5},
pages = {833--839},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2012-000820},
doi = {10.1136/AMIAJNL-2012-000820},
timestamp = {Mon, 26 Oct 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jamia/WagholikarMHGHLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/JonnalagaddaLSWWTL12,
author = {Siddhartha Jonnalagadda and
Dingcheng Li and
Sunghwan Sohn and
Stephen Tze{-}Inn Wu and
Kavishwar B. Wagholikar and
Manabu Torii and
Hongfang Liu},
title = {Coreference analysis in clinical notes: a multi-pass sieve with alternate
anaphora resolution modules},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {5},
pages = {867--874},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000766},
doi = {10.1136/AMIAJNL-2011-000766},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/JonnalagaddaLSWWTL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/WuLLTMCS12,
author = {Stephen T. Wu and
Hongfang Liu and
Dingcheng Li and
Cui Tao and
Mark A. Musen and
Christopher G. Chute and
Nigam H. Shah},
title = {Unified Medical Language System term occurrences in clinical notes:
a large-scale corpus analysis},
journal = {J. Am. Medical Informatics Assoc.},
volume = {19},
number = {e1},
year = {2012},
url = {https://doi.org/10.1136/amiajnl-2011-000744},
doi = {10.1136/AMIAJNL-2011-000744},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/WuLLTMCS12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/BielinskiPLSJCPR12,
author = {Suzette J. Bielinski and
Jyotishman Pathak and
Hongfang Liu and
Sunghwan Sohn and
Gail P. Jarvik and
David Carrell and
Naveen Pereira and
V{\'{e}}ronique L. Roger},
title = {Using Electronic Health Records to Identify Heart Failure Cohorts
with Differentiation for Preserved and Reduced Ejection Fraction},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-302-1.640299/a-303-1.640296},
timestamp = {Wed, 17 Apr 2024 11:48:03 +0200},
biburl = {https://dblp.org/rec/conf/amia/BielinskiPLSJCPR12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuSJPDACBLDX12,
author = {Mei Liu and
Anushi Shah and
Min Jiang and
Neeraja B. Peterson and
Qi Dai and
Melinda Aldrich and
Qingxia Chen and
Erica A. Bowton and
Hongfang Liu and
Joshua C. Denny and
Hua Xu},
title = {A Study of Transportability of an Existing Smoking Status Detection
Module across Institutions},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-003-1.640625/f-001-1.640626/a-068-1.641029/a-069-1.641026},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuSJPDACBLDX12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuWLJSWHHC12,
author = {Hongfang Liu and
Stephen T. Wu and
Dingcheng Li and
Siddhartha Jonnalagadda and
Sunghwan Sohn and
Kavishwar B. Wagholikar and
Peter J. Haug and
Stanley M. Huff and
Christopher G. Chute},
title = {Towards a semantic lexicon for clinical natural language processing},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-003-1.640625/f-001-1.640626/a-067-1.641032/a-068-1.641029},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuWLJSWHHC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WagholikarMHGHLC12,
author = {Kavishwar B. Wagholikar and
Kathy L. MacLaughlin and
Michael R. Henry and
Robert A. Greenes and
Ronald A. Hankey and
Hongfang Liu and
Rajeev Chaudhry},
title = {Clinical Decision Support with Natural Language Processing for Cervical
Cancer Screening},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-598-1.639397/a-599-1.639394},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WagholikarMHGHLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WangJWL12,
author = {Liwei Wang and
Guoqian Jiang and
Wei Wang and
Hongfang Liu},
title = {A Preliminary Study on Normalizing {AERS} Drug Names Using RxNorm},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-604-1.639378/a-605-1.639374},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WangJWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WuJSEWJL12,
author = {Stephen T. Wu and
Young J. Juhn and
Sunghwan Sohn and
Ravikumar Komandur Elayavilli and
Kavishwar B. Wagholikar and
Siddhartha Jonnalagadda and
Hongfang Liu},
title = {Asthma Status Identification with Natural Language Processing},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-006-1.640361/f-001-1.640362/a-277-1.640378/a-278-1.640375},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WuJSEWJL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/WuWKLC12,
author = {Stephen T. Wu and
Mark Wieland and
Vinod Kaggal and
Hongfang Liu and
Christopher G. Chute},
title = {Tracking Immigrant Health with Natural Language Processing},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-007-1.639272/f-001-1.639273/a-618-1.639335/a-619-1.639332},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/WuWKLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/XuACPDLSXLFLD12,
author = {Hua Xu and
Melinda Aldrich and
Qingxia Chen and
Neeraja B. Peterson and
Qi Dai and
Mia A. Levy and
Anushi Shah and
Han Xue and
Ying Li and
Carol Friedman and
Hongfang Liu and
Joshua C. Denny},
title = {Electronic health record data suggests metformin improves cancer survival:
{A} new model for drug repurposing studies},
booktitle = {{AMIA} 2012, American Medical Informatics Association Annual Symposium,
Chicago, Illinois, USA, November 3-7, 2012},
publisher = {{AMIA}},
year = {2012},
url = {https://knowledge.amia.org/amia-55142-a2012a-1.636547/t-006-1.640361/f-001-1.640362/a-278-1.640375/a-279-1.640372},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/XuACPDLSXLFLD12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/XuLYWL12,
author = {Bo Xu and
Hongfei Lin and
Zhihao Yang and
Kavishwar B. Wagholikar and
Hongfang Liu},
title = {Classifying protein complexes from candidate subgraphs using fuzzy
machine learning model},
booktitle = {2012 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2012, Philadelphia, USA, October 4-7, 2012},
pages = {640--647},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/BIBMW.2012.6470213},
doi = {10.1109/BIBMW.2012.6470213},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/XuLYWL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cgc/LiTLC12,
author = {Dingcheng Li and
Cui Tao and
Hongfang Liu and
Christopher G. Chute},
editor = {Jianxun Liu and
Jinjun Chen and
Guandong Xu},
title = {Ontology-Based Temporal Relation Modeling with MapReduce Latent Dirichlet
Allocations for Big {EHR} Data},
booktitle = {2012 Second International Conference on Cloud and Green Computing,
{CGC} 2012, Xiangtan, Hunan, China, November 1-3, 2012},
pages = {708--715},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/CGC.2012.112},
doi = {10.1109/CGC.2012.112},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cgc/LiTLC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/cikm/LiuWTC12,
author = {Hongfang Liu and
Stephen T. Wu and
Cui Tao and
Christopher G. Chute},
editor = {Cui Tao and
Matt{-}Mouley Bouamrane},
title = {Modeling {UIMA} type system using web ontology language: towards interoperability
among UIMA-based {NLP} tools},
booktitle = {Proceedings of the 2nd International Workshop on Managing Interoperability
and compleXity in Health Systems, MIX-HS, Maui, HI, USA, October 29,
2012},
pages = {31--36},
publisher = {{ACM}},
year = {2012},
url = {https://doi.org/10.1145/2389672.2389679},
doi = {10.1145/2389672.2389679},
timestamp = {Tue, 06 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/cikm/LiuWTC12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hisb/WagholikarSWKBGWLLCB12,
author = {Kavishwar B. Wagholikar and
Sunghwan Sohn and
Stephen T. Wu and
Vinod Kaggal and
Sheila Buehler and
Robert A. Greenes and
Tsung{-}Teh Wu and
David W. Larson and
Hongfang Liu and
Rajeev Chaudhry and
Lisa Boardman},
title = {Clinical Decision Support for Colonoscopy Surveillance Using Natural
Language Processing},
booktitle = {2012 {IEEE} Second International Conference on Healthcare Informatics,
Imaging and Systems Biology, {HISB} 2012, La Jolla, CA, USA, September
27-28, 2012},
pages = {12--21},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/HISB.2012.11},
doi = {10.1109/HISB.2012.11},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hisb/WagholikarSWKBGWLLCB12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hisb/JonnalagaddaFMWFML12,
author = {Siddhartha Jonnalagadda and
Guilherme Del Fiol and
Richard Medlin and
Charlene R. Weir and
Marcelo Fiszman and
Javed Mostafa and
Hongfang Liu},
title = {Automatically Extracting Sentences from Medline Citations to Support
Clinicians' Information Needs},
booktitle = {2012 {IEEE} Second International Conference on Healthcare Informatics,
Imaging and Systems Biology, {HISB} 2012, La Jolla, CA, USA, September
27-28, 2012},
pages = {72},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/HISB.2012.22},
doi = {10.1109/HISB.2012.22},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hisb/JonnalagaddaFMWFML12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/hisb/SohnMJWWCLH12,
author = {Sunghwan Sohn and
Sean P. Murphy and
Siddhartha Jonnalagadda and
Kavishwar B. Wagholikar and
Stephen T. Wu and
Christopher G. Chute and
Hongfang Liu and
Scott R. Halgrim},
title = {Systematic Analysis of Cross-Institutional Medication Description
Patterns in Clinical Notes},
booktitle = {2012 {IEEE} Second International Conference on Healthcare Informatics,
Imaging and Systems Biology, {HISB} 2012, La Jolla, CA, USA, September
27-28, 2012},
pages = {118},
publisher = {{IEEE} Computer Society},
year = {2012},
url = {https://doi.org/10.1109/HISB.2012.43},
doi = {10.1109/HISB.2012.43},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/hisb/SohnMJWWCLH12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/WuMRL12,
author = {Stephen T. Wu and
James J. Masanz and
K. E. Ravikumar and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Three Questions About Clinical Information Retrieval},
booktitle = {Proceedings of The Twenty-First Text REtrieval Conference, {TREC}
2012, Gaithersburg, Maryland, USA, November 6-9, 2012},
series = {{NIST} Special Publication},
volume = {500-298},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2012},
url = {http://trec.nist.gov/pubs/trec21/papers/MayoClinicNLP.medical.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/WuMRL12.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ZeebergLKERBBBLRWP11,
author = {Barry Zeeberg and
Hongfang Liu and
Ari B. Kahn and
Martin Ehler and
Vinodh N. Rajapakse and
Robert F. Bonner and
Jacob D. Brown and
Brian P. Brooks and
Vladimir L. Larionov and
William C. Reinhold and
John N. Weinstein and
Yves Pommier},
title = {RedundancyMiner: De-replication of redundant {GO} categories in microarray
and proteomics analysis},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {52},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-52},
doi = {10.1186/1471-2105-12-52},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ZeebergLKERBBBLRWP11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/WangTLHH11,
author = {Jinlian Wang and
Manabu Torii and
Hongfang Liu and
Gerald W. Hart and
Zhang{-}Zhi Hu},
title = {dbOGAP - An Integrated Bioinformatics Resource for Protein O-GlcNAcylation},
journal = {{BMC} Bioinform.},
volume = {12},
pages = {91},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-91},
doi = {10.1186/1471-2105-12-91},
timestamp = {Fri, 09 Apr 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/WangTLHH11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LuKWHLKHTDOCGSALVRRRBSLTMCVLW11,
author = {Zhiyong Lu and
Hung{-}Yu Kao and
Chih{-}Hsuan Wei and
Minlie Huang and
Jingchen Liu and
Cheng{-}Ju Kuo and
Chun{-}Nan Hsu and
Richard Tzong{-}Han Tsai and
Hong{-}Jie Dai and
Naoaki Okazaki and
Han{-}Cheol Cho and
Martin Gerner and
Ill{\'{e}}s Solt and
Shashank Agarwal and
Feifan Liu and
Dina Vishnyakova and
Patrick Ruch and
Martin Romacker and
Fabio Rinaldi and
Sanmitra Bhattacharya and
Padmini Srinivasan and
Hongfang Liu and
Manabu Torii and
S{\'{e}}rgio Matos and
David Campos and
Karin Verspoor and
Kevin M. Livingston and
W. John Wilbur},
title = {The gene normalization task in BioCreative {III}},
journal = {{BMC} Bioinform.},
volume = {12},
number = {{S-8}},
pages = {S2},
year = {2011},
url = {https://doi.org/10.1186/1471-2105-12-S8-S2},
doi = {10.1186/1471-2105-12-S8-S2},
timestamp = {Wed, 07 Dec 2022 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/LuKWHLKHTDOCGSALVRRRBSLTMCVLW11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijmi/ToriiYNMLHN11,
author = {Manabu Torii and
Lanlan Yin and
Thang Nguyen and
Chand T. Mazumdar and
Hongfang Liu and
David M. Hartley and
Noele P. Nelson},
title = {An exploratory study of a text classification framework for Internet-based
surveillance of emerging epidemics},
journal = {Int. J. Medical Informatics},
volume = {80},
number = {1},
pages = {56--66},
year = {2011},
url = {https://doi.org/10.1016/j.ijmedinf.2010.10.015},
doi = {10.1016/J.IJMEDINF.2010.10.015},
timestamp = {Fri, 21 Feb 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/ijmi/ToriiYNMLHN11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ToriiWL11,
author = {Manabu Torii and
Kavishwar B. Wagholikar and
Hongfang Liu},
title = {Using machine learning for concept extraction on clinical documents
from multiple data sources},
journal = {J. Am. Medical Informatics Assoc.},
volume = {18},
number = {5},
pages = {580--587},
year = {2011},
url = {https://doi.org/10.1136/amiajnl-2011-000155},
doi = {10.1136/AMIAJNL-2011-000155},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ToriiWL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bcb/WagholikarTL11,
author = {Kavishwar B. Wagholikar and
Manabu Torii and
Hongfang Liu},
editor = {Robert Grossman and
Andrey Rzhetsky and
Sun Kim and
Wei Wang},
title = {Human gene/protein synonym dictionary from WikiLinks},
booktitle = {{ACM} International Conference on Bioinformatics, Computational Biology
and Biomedicine, BCB' 11, Chicago, IL, {USA} - July 31 - August 03,
2011},
pages = {462--464},
publisher = {{ACM}},
year = {2011},
url = {https://doi.org/10.1145/2147805.2147870},
doi = {10.1145/2147805.2147870},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bcb/WagholikarTL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/ChenTLL11,
author = {Yang Chen and
Manabu Torii and
Chang{-}Tien Lu and
Hongfang Liu},
title = {Learning from positive and unlabeled documents for automated detection
of alternative splicing sentences in medline abstracts},
booktitle = {2011 {IEEE} International Conference on Bioinformatics and Biomedicine
Workshops, {BIBMW} 2011, Atlanta, GA, USA, November 12-15, 2011},
pages = {530--537},
publisher = {{IEEE} Computer Society},
year = {2011},
url = {https://doi.org/10.1109/BIBMW.2011.6112425},
doi = {10.1109/BIBMW.2011.6112425},
timestamp = {Mon, 01 May 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/bibm/ChenTLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icica/LiuLL11,
author = {Hongfang Liu and
Ruijuan Li and
Nana Li},
editor = {Chunfeng Liu and
Jincai Chang and
Aimin Yang},
title = {Hamilton Non-holonomic Momentum Equation of the System and Conclusions},
booktitle = {Information Computing and Applications - Second International Conference,
{ICICA} 2011, Qinhuangdao, China, October 28-31, 2011. Proceedings,
Part {I}},
series = {Communications in Computer and Information Science},
volume = {243},
pages = {23--29},
publisher = {Springer},
year = {2011},
url = {https://doi.org/10.1007/978-3-642-27503-6\_4},
doi = {10.1007/978-3-642-27503-6\_4},
timestamp = {Wed, 29 Aug 2018 17:16:57 +0200},
biburl = {https://dblp.org/rec/conf/icica/LiuLL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/WuWSKL11,
author = {Stephen T. Wu and
Kavishwar B. Wagholikar and
Sunghwan Sohn and
Vinod Kaggal and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Empirical Ontologies for Cohort Identification},
booktitle = {Proceedings of The Twentieth Text REtrieval Conference, {TREC} 2011,
Gaithersburg, Maryland, USA, November 15-18, 2011},
series = {{NIST} Special Publication},
volume = {500-296},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2011},
url = {http://trec.nist.gov/pubs/trec20/papers/Mayo.update.pdf},
timestamp = {Wed, 03 Feb 2021 08:31:23 +0100},
biburl = {https://dblp.org/rec/conf/trec/WuWSKL11.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/artmed/YinXTNMWHL10,
author = {Lanlan Yin and
Guixian Xu and
Manabu Torii and
Zhendong Niu and
Jos{\'{e}} M. Maisog and
Cathy H. Wu and
Zhang{-}Zhi Hu and
Hongfang Liu},
title = {Document classification for mining host pathogen protein-protein interactions},
journal = {Artif. Intell. Medicine},
volume = {49},
number = {3},
pages = {155--160},
year = {2010},
url = {https://doi.org/10.1016/j.artmed.2010.04.003},
doi = {10.1016/J.ARTMED.2010.04.003},
timestamp = {Sat, 09 Apr 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/artmed/YinXTNMWHL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ese/KoruLZE10,
author = {G{\"{u}}nes Koru and
Hongfang Liu and
Dongsong Zhang and
Khaled El Emam},
title = {Testing the theory of relative defect proneness for closed-source
software},
journal = {Empir. Softw. Eng.},
volume = {15},
number = {6},
pages = {577--598},
year = {2010},
url = {https://doi.org/10.1007/s10664-010-9132-x},
doi = {10.1007/S10664-010-9132-X},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ese/KoruLZE10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijcmam/LiuTXG10,
author = {Hongfang Liu and
Manabu Torii and
Guixian Xu and
Johannes Goll},
title = {Classification Systems for Bacterial Protein-Protein Interaction Document
Retrieval},
journal = {Int. J. Comput. Model. Algorithms Medicine},
volume = {1},
number = {1},
pages = {34--44},
year = {2010},
url = {https://doi.org/10.4018/jcmam.2010072003},
doi = {10.4018/JCMAM.2010072003},
timestamp = {Thu, 09 Apr 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijcmam/LiuTXG10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ijfipm/SongL10,
author = {Min Song and
Hongfang Liu},
title = {LFXtractor: Text chunking for long form detection from biomedical
text},
journal = {Int. J. Funct. Informatics Pers. Medicine},
volume = {3},
number = {2},
pages = {89--102},
year = {2010},
url = {https://doi.org/10.1504/IJFIPM.2010.037148},
doi = {10.1504/IJFIPM.2010.037148},
timestamp = {Thu, 18 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ijfipm/SongL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ihi/ToriiBLNJNH10,
author = {Manabu Torii and
Burt{-}Ujin Bayarsaikhan and
Hongfang Liu and
Thang Nguyen and
Kevin Jones and
Noele P. Nelson and
David M. Hartley},
editor = {Tiffany C. Veinot and
{\"{U}}mit V. {\c{C}}ataly{\"{u}}rek and
Gang Luo and
Henrique Andrade and
Neil R. Smalheiser},
title = {An exploratory study of news article clustering for web-based bio-surveillance},
booktitle = {{ACM} International Health Informatics Symposium, {IHI} 2010, Arlington,
VA, USA, November 11 - 12, 2010, Proceedings},
pages = {435--439},
publisher = {{ACM}},
year = {2010},
url = {https://doi.org/10.1145/1882992.1883058},
doi = {10.1145/1882992.1883058},
timestamp = {Wed, 14 Nov 2018 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ihi/ToriiBLNJNH10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/smbm/LeeTHTSL10,
author = {Chong Min Lee and
Manabu Torii and
Zhang{-}Zhi Hu and
Yi{-}Ting Tsai and
Jinesh Shah and
Hongfang Liu},
editor = {Nigel Collier and
Udo Hahn and
Dietrich Rebholz{-}Schuhmann and
Fabio Rinaldi and
Sampo Pyysalo},
title = {Evaluating gene/protein name tagging and mapping for article retrieval},
booktitle = {Proceedings of the Fourth International Symposium for Semantic Mining
in Biomedicine, Cambridge, United Kingdom, October, 2010},
series = {{CEUR} Workshop Proceedings},
volume = {714},
publisher = {CEUR-WS.org},
year = {2010},
url = {https://ceur-ws.org/Vol-714/ShortPaper02\_Lee.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:16 +0100},
biburl = {https://dblp.org/rec/conf/smbm/LeeTHTSL10.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ArighiLNBDBSW09,
author = {Cecilia N. Arighi and
Hongfang Liu and
Darren A. Natale and
Winona C. Barker and
Harold J. Drabkin and
Judith A. Blake and
Barry Smith and
Cathy H. Wu},
title = {TGF-beta signaling proteins and the Protein Ontology},
journal = {{BMC} Bioinform.},
volume = {10},
number = {{S-5}},
year = {2009},
url = {https://doi.org/10.1186/1471-2105-10-S5-S3},
doi = {10.1186/1471-2105-10-S5-S3},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ArighiLNBDBSW09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/ToriiHWL09,
author = {Manabu Torii and
Zhang{-}Zhi Hu and
Cathy H. Wu and
Hongfang Liu},
title = {Research Paper: BioTagger-GM: {A} Gene/Protein Name Recognition System},
journal = {J. Am. Medical Informatics Assoc.},
volume = {16},
number = {2},
pages = {247--255},
year = {2009},
url = {https://doi.org/10.1197/jamia.M2844},
doi = {10.1197/JAMIA.M2844},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/ToriiHWL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/tse/KoruZEL09,
author = {Akif G{\"{u}}nes Koru and
Dongsong Zhang and
Khaled El Emam and
Hongfang Liu},
title = {An Investigation into the Functional Form of the Size-Defect Relationship
for Software Modules},
journal = {{IEEE} Trans. Software Eng.},
volume = {35},
number = {2},
pages = {293--304},
year = {2009},
url = {https://doi.org/10.1109/TSE.2008.90},
doi = {10.1109/TSE.2008.90},
timestamp = {Wed, 17 May 2017 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/tse/KoruZEL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ToriiLH09,
author = {Manabu Torii and
Hongfang Liu and
Zhang{-}Zhi Hu},
title = {Support Vector Machine-Based Mucin-Type O-linked Glycosylation Site
Prediction Using Enhanced Sequence Feature Encoding},
booktitle = {{AMIA} 2009, American Medical Informatics Association Annual Symposium,
San Francisco, CA, USA, November 14-18, 2009},
publisher = {{AMIA}},
year = {2009},
url = {https://knowledge.amia.org/amia-55142-a2009a-1.626575/t-001-1.627318/f-001-1.627319/a-123-1.627382/a-124-1.627379},
timestamp = {Wed, 17 Apr 2024 11:48:10 +0200},
biburl = {https://dblp.org/rec/conf/amia/ToriiLH09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csee/UmarjiSKL09,
author = {Medha Umarji and
Carolyn B. Seaman and
Akif G{\"{u}}nes Koru and
Hongfang Liu},
title = {Software Engineering Education for Bioinformatics},
booktitle = {Proceedings 22nd Conference on Software Engineering Education and
Training, {CSEET} 2009, Hyderabad, India, 17-20 Feb. 2009},
pages = {216--223},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/CSEET.2009.44},
doi = {10.1109/CSEET.2009.44},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csee/UmarjiSKL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/csie/JinZL09,
author = {Hongyong Jin and
Xiuping Zhao and
Hongfang Liu},
editor = {Mark Burgin and
Masud H. Chowdhury and
Chan H. Ham and
Simone A. Ludwig and
Weilian Su and
Sumanth Yenduri},
title = {Testing of the Uniformity of Color Appearance Space},
booktitle = {{CSIE} 2009, 2009 {WRI} World Congress on Computer Science and Information
Engineering, March 31 - April 2, 2009, Los Angeles, California, USA,
7 Volumes},
pages = {307--311},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/CSIE.2009.539},
doi = {10.1109/CSIE.2009.539},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/csie/JinZL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ijcbs/XuNUGQL09,
author = {Guixian Xu and
Zhendong Niu and
Peter Uetz and
Xu Gao and
Xuping Qin and
Hongfang Liu},
editor = {Joe Zhang and
Guo{-}Zheng Li and
Jack Y. Yang},
title = {Semi-supervised Learning of Text Classification on Bacterial Protein-Protein
Interaction Documents},
booktitle = {International Joint Conferences on Bioinformatics, Systems Biology
and Intelligent Computing, {IJCBS} 2009, Shanghai, China, 3-5 August
2009},
pages = {263--270},
publisher = {{IEEE} Computer Society},
year = {2009},
url = {https://doi.org/10.1109/IJCBS.2009.68},
doi = {10.1109/IJCBS.2009.68},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ijcbs/XuNUGQL09.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KestlerMKBGLKZW08,
author = {Hans A. Kestler and
Andr{\'{e}} M{\"{u}}ller and
Johann M. Kraus and
Malte Buchholz and
Thomas M. Gress and
Hongfang Liu and
David W. Kane and
Barry Zeeberg and
John N. Weinstein},
title = {VennMaster: Area-proportional Euler diagrams for functional {GO} analysis
of microarrays},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-67},
doi = {10.1186/1471-2105-9-67},
timestamp = {Sat, 30 Sep 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KestlerMKBGLKZW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/RyanZCCKLW08,
author = {Michael C. Ryan and
Barry Zeeberg and
Natasha J. Caplen and
James A. Cleland and
Ari B. Kahn and
Hongfang Liu and
John N. Weinstein},
title = {SpliceCenter: {A} suite of web-based bioinformatic applications for
evaluating the impact of alternative splicing on RT-PCR, RNAi, microarray,
and peptide-based studies},
journal = {{BMC} Bioinform.},
volume = {9},
year = {2008},
url = {https://doi.org/10.1186/1471-2105-9-313},
doi = {10.1186/1471-2105-9-313},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/RyanZCCKLW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/ese/KoruEZLM08,
author = {Akif G{\"{u}}nes Koru and
Khaled El Emam and
Dongsong Zhang and
Hongfang Liu and
Divya Mathew},
title = {Theory of relative defect proneness},
journal = {Empir. Softw. Eng.},
volume = {13},
number = {5},
pages = {473--498},
year = {2008},
url = {https://doi.org/10.1007/s10664-008-9080-x},
doi = {10.1007/S10664-008-9080-X},
timestamp = {Tue, 25 Aug 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/ese/KoruEZLM08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuLYC08,
author = {Hongfang Liu and
Xin Li and
Victoria Y. Yoon and
Robert Clarke},
title = {Annotating breast cancer microarray samples using ontologies},
booktitle = {{AMIA} 2008, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 8-12, 2008},
publisher = {{AMIA}},
year = {2008},
url = {https://knowledge.amia.org/amia-55142-a2008a-1.625176/t-001-1.626020/f-001-1.626021/a-085-1.626309/a-086-1.626306},
timestamp = {Wed, 17 Apr 2024 11:48:12 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuLYC08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/XuYTNWHL08,
author = {Guixian Xu and
Lanlan Yin and
Manabu Torii and
Zhendong Niu and
Cathy H. Wu and
Zhang{-}Zhi Hu and
Hongfang Liu},
editor = {Xue{-}wen Chen and
Xiaohua Hu and
Sun Kim},
title = {Document Classification for Mining Host Pathogen Protein-Protein Interactions},
booktitle = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
pages = {461--466},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/BIBM.2008.66},
doi = {10.1109/BIBM.2008.66},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/XuYTNWHL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibm/HuCHVLGW08,
author = {Zhang{-}Zhi Hu and
K. Bretonnel Cohen and
Lynette Hirschman and
Alfonso Valencia and
Hongfang Liu and
Michelle G. Giglio and
Cathy H. Wu},
editor = {Xue{-}wen Chen and
Xiaohua Hu and
Sun Kim},
title = {iProLINK: {A} Framework for Linking Text Mining with Ontology and
Systems Biology},
booktitle = {2008 {IEEE} International Conference on Bioinformatics and Biomedicine,
{BIBM} 2008, Philadephia, Pennsylvania, USA, November 3-5, 2008},
pages = {467--472},
publisher = {{IEEE} Computer Society},
year = {2008},
url = {https://doi.org/10.1109/BIBM.2008.73},
doi = {10.1109/BIBM.2008.73},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibm/HuCHVLGW08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/biocomp/BebuSL08,
author = {Ionut Bebu and
Fran{\c{c}}oise Seillier{-}Moiseiwitsch and
Hongfang Liu},
editor = {Hamid R. Arabnia and
Mary Qu Yang and
Jack Y. Yang},
title = {Analysis of Microarray Titration Experiments},
booktitle = {International Conference on Bioinformatics {\&} Computational
Biology, {BIOCOMP} 2008, July 14-17, 2008, Las Vegas Nevada, USA,
2 Volumes},
pages = {942--946},
publisher = {{CSREA} Press},
year = {2008},
timestamp = {Fri, 06 Feb 2009 11:52:50 +0100},
biburl = {https://dblp.org/rec/conf/biocomp/BebuSL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icse/UmarjiPSKL08,
author = {Medha Umarji and
Mark Pohl and
Carolyn Seaman and
Akif G{\"{u}}nes Koru and
Hongfang Liu},
editor = {Robin Abraham and
Margaret Burnett and
Mary Shaw},
title = {Teaching software engineering to end-users},
booktitle = {Proceedings of the 4th international workshop on End-user software
engineering, {WEUSE} '08, Leipzig, Germany, May 12, 2008},
pages = {40--42},
publisher = {{ACM}},
year = {2008},
url = {https://doi.org/10.1145/1370847.1370856},
doi = {10.1145/1370847.1370856},
timestamp = {Tue, 25 Jan 2022 20:30:35 +0100},
biburl = {https://dblp.org/rec/conf/icse/UmarjiPSKL08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ismb/LiuTXHG08,
author = {Hongfang Liu and
Manabu Torii and
Guixian Xu and
Zhang{-}Zhi Hu and
Johannes Goll},
editor = {Christian Blaschke and
Hagit Shatkay},
title = {Learning from Positive and Unlabeled Documents for Retrieval of Bacterial
Protein-Protein Interaction Literature},
booktitle = {Linking Literature, Information, and Knowledge for Biology - Workshop
of the BioLink Special Interest Group, {ISMB/ECCB} 2009, Stockholm,
Sweden, June 28-29, 2009, Revised Selected Papers},
series = {Lecture Notes in Computer Science},
volume = {6004},
pages = {62--70},
publisher = {Springer},
year = {2008},
url = {https://doi.org/10.1007/978-3-642-13131-8\_8},
doi = {10.1007/978-3-642-13131-8\_8},
timestamp = {Tue, 14 May 2019 10:00:52 +0200},
biburl = {https://dblp.org/rec/conf/ismb/LiuTXHG08.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuZQKFKRNMRKW07,
author = {Hongfang Liu and
Barry Zeeberg and
Gang Qu and
Akif G{\"{u}}nes Koru and
Alessandro Ferrucci and
Ari B. Kahn and
Michael C. Ryan and
Antej Nuhanovic and
Peter J. Munson and
William C. Reinhold and
David W. Kane and
John N. Weinstein},
title = {AffyProbeMiner: a web resource for computing or retrieving accurately
redefined Affymetrix probe sets},
journal = {Bioinform.},
volume = {23},
number = {18},
pages = {2385--2390},
year = {2007},
url = {https://doi.org/10.1093/bioinformatics/btm360},
doi = {10.1093/BIOINFORMATICS/BTM360},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuZQKFKRNMRKW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/KahnRLZJW07,
author = {Ari B. Kahn and
Michael C. Ryan and
Hongfang Liu and
Barry Zeeberg and
D. Curtis Jamison and
John N. Weinstein},
title = {SpliceMiner: a high-throughput database implementation of the {NCBI}
Evidence Viewer for microarray splice variant analysis},
journal = {{BMC} Bioinform.},
volume = {8},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-75},
doi = {10.1186/1471-2105-8-75},
timestamp = {Sun, 02 Oct 2022 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/KahnRLZJW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/NataleABBCHLSW07,
author = {Darren A. Natale and
Cecilia N. Arighi and
Winona C. Barker and
Judith A. Blake and
Ti{-}Cheng Chang and
Zhang{-}Zhi Hu and
Hongfang Liu and
Barry Smith and
Cathy H. Wu},
title = {Framework for a Protein Ontology},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-9}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S9-S1},
doi = {10.1186/1471-2105-8-S9-S1},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/NataleABBCHLSW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/ToriiHSWL07,
author = {Manabu Torii and
Zhang{-}Zhi Hu and
Min Song and
Cathy H. Wu and
Hongfang Liu},
title = {A comparison study on algorithms of detecting long forms for short
forms in biomedical text},
journal = {{BMC} Bioinform.},
volume = {8},
number = {{S-9}},
year = {2007},
url = {https://doi.org/10.1186/1471-2105-8-S9-S5},
doi = {10.1186/1471-2105-8-S9-S5},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/ToriiHSWL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jss/KoruL07,
author = {Akif G{\"{u}}nes Koru and
Hongfang Liu},
title = {Identifying and characterizing change-prone classes in two large-scale
open-source products},
journal = {J. Syst. Softw.},
volume = {80},
number = {1},
pages = {63--73},
year = {2007},
url = {https://doi.org/10.1016/j.jss.2006.05.017},
doi = {10.1016/J.JSS.2006.05.017},
timestamp = {Mon, 28 Aug 2023 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jss/KoruL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/ToriiL07,
author = {Manabu Torii and
Hongfang Liu},
title = {Enhancing Acronym/Abbreviation Knowledge Bases with Semantic Information},
booktitle = {{AMIA} 2007, American Medical Informatics Association Annual Symposium,
Chicago, IL, USA, November 10-14, 2007},
publisher = {{AMIA}},
year = {2007},
url = {https://knowledge.amia.org/amia-55142-a2007a-1.623841/t-001-1.624626/f-001-1.624627/a-141-1.624705/a-142-1.624702},
timestamp = {Wed, 17 Apr 2024 11:48:14 +0200},
biburl = {https://dblp.org/rec/conf/amia/ToriiL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/BebuSL07,
author = {Ionut Bebu and
Fran{\c{c}}oise Seillier{-}Moiseiwitsch and
Hongfang Liu},
title = {Semiparametric {RMA} Background-Correction for Oligonucleotide Arrays},
booktitle = {Proceedings of the 7th {IEEE} International Conference on Bioinformatics
and Bioengineering, {BIBE} 2007, October 14-17, 2007, Harvard Medical
School, Boston, MA, {USA}},
pages = {1404--1408},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/BIBE.2007.4375756},
doi = {10.1109/BIBE.2007.4375756},
timestamp = {Wed, 16 Oct 2019 14:14:56 +0200},
biburl = {https://dblp.org/rec/conf/bibe/BebuSL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icdm/LiuTHW07,
author = {Hongfang Liu and
Manabu Torii and
Zhang{-}Zhi Hu and
Cathy H. Wu},
title = {Mapping Gene/Protein Names in Free Text to Biomedical Databases},
booktitle = {Workshops Proceedings of the 7th {IEEE} International Conference on
Data Mining {(ICDM} 2007), October 28-31, 2007, Omaha, Nebraska, {USA}},
pages = {101--106},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ICDMW.2007.94},
doi = {10.1109/ICDMW.2007.94},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icdm/LiuTHW07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/icse/KoruZL07,
author = {Akif G{\"{u}}nes Koru and
Dongsong Zhang and
Hongfang Liu},
title = {Modeling the Effect of Size on Defect Proneness for Open-Source Software},
booktitle = {29th International Conference on Software Engineering {(ICSE} 2007),
Minneapolis, MN, USA, May 20-26, 2007, Companion Volume},
pages = {115--124},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/ICSECOMPANION.2007.54},
doi = {10.1109/ICSECOMPANION.2007.54},
timestamp = {Thu, 23 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/icse/KoruZL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/lbm/ToriiL07,
author = {Manabu Torii and
Hongfang Liu},
editor = {Christopher J. O. Baker and
Jian Su},
title = {Classifier Ensemble for Biomedical Document Retrieval},
booktitle = {Short Paper Proceedings of the 2nd International Symposium on Languages
in Biology and Medicine {(LBM} 2007), Singapore, December 6-7, 2007},
series = {{CEUR} Workshop Proceedings},
volume = {319},
publisher = {CEUR-WS.org},
year = {2007},
url = {https://ceur-ws.org/Vol-319/Paper5.pdf},
timestamp = {Fri, 10 Mar 2023 16:22:16 +0100},
biburl = {https://dblp.org/rec/conf/lbm/ToriiL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/oss/KoruZL07,
author = {Akif G{\"{u}}nes Koru and
Dongsong Zhang and
Hongfang Liu},
editor = {Joseph Feller and
Brian Fitzgerald and
Walt Scacchi and
Alberto Sillitti},
title = {Effect of Coupling on Defect Proneness in Evolutionary Open-Source
Software Development},
booktitle = {Open Source Development, Adoption and Innovation, {IFIP} Working Group
2.13 on Open Source Software, June 11-14, 2007, Limerick, Ireland},
series = {{IFIP}},
volume = {234},
pages = {271--276},
publisher = {Springer},
year = {2007},
url = {https://doi.org/10.1007/978-0-387-72486-7\_27},
doi = {10.1007/978-0-387-72486-7\_27},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/oss/KoruZL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/promise/KoruZL07,
author = {Akif G{\"{u}}nes Koru and
Dongsong Zhang and
Hongfang Liu},
title = {Modeling the Effect of Size on Defect Proneness for Open-Source Software},
booktitle = {Proceedings of the Third International Workshop on Predictor Models
in Software Engineering, {PROMISE} '07, Minneapolis, MN, USA, May
2007},
pages = {10},
publisher = {{IEEE} Computer Society},
year = {2007},
url = {https://doi.org/10.1109/PROMISE.2007.9},
doi = {10.1109/PROMISE.2007.9},
timestamp = {Wed, 26 Jan 2022 15:01:19 +0100},
biburl = {https://dblp.org/rec/conf/promise/KoruZL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/RuizSWL07,
author = {Miguel E. Ruiz and
Ying Sun and
Jianqiang Wang and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Exploring Traits of Adjectives to Predict Polarity Opinion in Blogs
and Semantic Filters in Genomics},
booktitle = {Proceedings of The Sixteenth Text REtrieval Conference, {TREC} 2007,
Gaithersburg, Maryland, USA, November 5-9, 2007},
series = {{NIST} Special Publication},
volume = {500-274},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2007},
url = {http://trec.nist.gov/pubs/trec16/papers/unorth-texas.blog.final.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/RuizSWL07.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/LiuHZW06,
author = {Hongfang Liu and
Zhang{-}Zhi Hu and
Jian Zhang and
Cathy H. Wu},
title = {BioThesaurus: a web-based thesaurus of protein and gene names},
journal = {Bioinform.},
volume = {22},
number = {1},
pages = {103--105},
year = {2006},
url = {https://doi.org/10.1093/bioinformatics/bti749},
doi = {10.1093/BIOINFORMATICS/BTI749},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bioinformatics/LiuHZW06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/XuMDLF06,
author = {Hua Xu and
Marianthi Markatou and
Rositsa Dimova and
Hongfang Liu and
Carol Friedman},
title = {Machine learning and word sense disambiguation in the biomedical domain:
design and evaluation issues},
journal = {{BMC} Bioinform.},
volume = {7},
pages = {334},
year = {2006},
url = {https://doi.org/10.1186/1471-2105-7-334},
doi = {10.1186/1471-2105-7-334},
timestamp = {Sun, 15 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bmcbi/XuMDLF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuHTWF06,
author = {Hongfang Liu and
Zhang{-}Zhi Hu and
Manabu Torii and
Cathy H. Wu and
Carol Friedman},
title = {Research Paper: Quantitative Assessment of Dictionary-based Protein
Named Entity Tagging},
journal = {J. Am. Medical Informatics Assoc.},
volume = {13},
number = {5},
pages = {497--507},
year = {2006},
url = {https://doi.org/10.1197/jamia.M2085},
doi = {10.1197/JAMIA.M2085},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LiuHTWF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/ZhouTCCLLHF06,
author = {Li Zhou and
Ying Tao and
James J. Cimino and
Elizabeth S. Chen and
Hongfang Liu and
Yves A. Lussier and
George Hripcsak and
Carol Friedman},
title = {Terminology model discovery using natural language processing and
visualization techniques},
journal = {J. Biomed. Informatics},
volume = {39},
number = {6},
pages = {626--636},
year = {2006},
url = {https://doi.org/10.1016/j.jbi.2005.10.006},
doi = {10.1016/J.JBI.2005.10.006},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/ZhouTCCLLHF06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/pakdd/ToriiL06,
author = {Manabu Torii and
Hongfang Liu},
editor = {Eric G. Bremer and
J{\"{o}}rg Hakenberg and
Eui{-}Hong Han and
Daniel P. Berrar and
Werner Dubitzky},
title = {Headwords and Suffixes in Biomedical Names},
booktitle = {Knowledge Discovery in Life Science Literature, {PAKDD} 2006 International
Workshop, {KDLL} 2006, Singapore, April 9, 2006, Proceedings},
series = {Lecture Notes in Computer Science},
volume = {3886},
pages = {29--41},
publisher = {Springer},
year = {2006},
url = {https://doi.org/10.1007/11683568\_3},
doi = {10.1007/11683568\_3},
timestamp = {Tue, 14 May 2019 10:00:51 +0200},
biburl = {https://dblp.org/rec/conf/pakdd/ToriiL06.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bioinformatics/ChenLF05,
author = {Lifeng Chen and
Hongfang Liu and
Carol Friedman},
title = {Gene name ambiguity of eukaryotic nomenclatures},
journal = {Bioinform.},
volume = {21},
number = {2},
pages = {248--256},
year = {2005},
url = {https://doi.org/10.1093/bioinformatics/bth496},
doi = {10.1093/BIOINFORMATICS/BTH496},
timestamp = {Mon, 02 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/bioinformatics/ChenLF05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/bmcbi/LiuHW05,
author = {Hongfang Liu and
Zhang{-}Zhi Hu and
Cathy H. Wu},
title = {DynGO: a tool for visualizing and mining of Gene Ontology and its
associations},
journal = {{BMC} Bioinform.},
volume = {6},
pages = {201},
year = {2005},
url = {https://doi.org/10.1186/1471-2105-6-201},
doi = {10.1186/1471-2105-6-201},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/bmcbi/LiuHW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/sigsoft/KoruL05,
author = {Akif G{\"{u}}nes Koru and
Hongfang Liu},
title = {An investigation of the effect of module size on defect prediction
using static measures},
journal = {{ACM} {SIGSOFT} Softw. Eng. Notes},
volume = {30},
number = {4},
pages = {1--5},
year = {2005},
url = {https://doi.org/10.1145/1082983.1083172},
doi = {10.1145/1082983.1083172},
timestamp = {Thu, 17 Sep 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/sigsoft/KoruL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/software/KoruL05,
author = {Akif G{\"{u}}nes Koru and
Hongfang Liu},
title = {Building Effective Defect-Prediction Models in Practice},
journal = {{IEEE} Softw.},
volume = {22},
number = {6},
pages = {23--29},
year = {2005},
url = {https://doi.org/10.1109/MS.2005.149},
doi = {10.1109/MS.2005.149},
timestamp = {Mon, 08 Jun 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/software/KoruL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/acl/LiuHW05,
author = {Hongfang Liu and
Zhang{-}Zhi Hu and
Cathy H. Wu},
editor = {Kevin Knight and
Hwee Tou Ng and
Kemal Oflazer},
title = {Dynamically Generating a Protein Entity Dictionary Using Online Resources},
booktitle = {{ACL} 2005, 43rd Annual Meeting of the Association for Computational
Linguistics, Proceedings of the Conference, 25-30 June 2005, University
of Michigan, {USA}},
pages = {17--20},
publisher = {The Association for Computer Linguistics},
year = {2005},
url = {https://aclanthology.org/P05-3005/},
timestamp = {Fri, 06 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/acl/LiuHW05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/promise/KoruL05,
author = {Akif G{\"{u}}nes Koru and
Hongfang Liu},
title = {An investigation of the effect of module size on defect prediction
using static measures},
booktitle = {Proceedings of the 2005 workshop on Predictor models in software engineering,
{PROMISE} '05, St. Louis, Missouri, USA, May 15, 2005},
pages = {7:1--7:5},
publisher = {{ACM}},
year = {2005},
url = {https://doi.org/10.1145/1083165.1083172},
doi = {10.1145/1083165.1083172},
timestamp = {Wed, 26 Jan 2022 14:47:43 +0100},
biburl = {https://dblp.org/rec/conf/promise/KoruL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/AronsonDHLRRSTWL05,
author = {Alan R. Aronson and
Dina Demner{-}Fushman and
Susanne M. Humphrey and
Jimmy Lin and
Patrick Ruch and
Miguel E. Ruiz and
Lawrence H. Smith and
Lorraine K. Tanabe and
W. John Wilbur and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Fusion of Knowledge-Intensive and Statistical Approaches for Retrieving
and Annotating Textual Genomics Documents},
booktitle = {Proceedings of the Fourteenth Text REtrieval Conference, {TREC} 2005,
Gaithersburg, Maryland, USA, November 15-18, 2005},
series = {{NIST} Special Publication},
volume = {500-266},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2005},
url = {http://trec.nist.gov/pubs/trec14/papers/nlm-umd.geo.pdf},
timestamp = {Fri, 27 Aug 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/trec/AronsonDHLRRSTWL05.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/candc/HuMHLW04,
author = {Zhang{-}Zhi Hu and
Inderjeet Mani and
Vincent Hermoso and
Hongfang Liu and
Cathy H. Wu},
title = {iProLINK: an integrated protein resource for literature mining},
journal = {Comput. Biol. Chem.},
volume = {28},
number = {5-6},
pages = {409--416},
year = {2004},
url = {https://doi.org/10.1016/j.compbiolchem.2004.09.010},
doi = {10.1016/J.COMPBIOLCHEM.2004.09.010},
timestamp = {Thu, 14 Oct 2021 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/candc/HuMHLW04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuTF04,
author = {Hongfang Liu and
Virginia Teller and
Carol Friedman},
title = {Research Paper: {A} Multi-aspect Comparison Study of Supervised Word
Sense Disambiguation},
journal = {J. Am. Medical Informatics Assoc.},
volume = {11},
number = {4},
pages = {320--331},
year = {2004},
url = {https://doi.org/10.1197/jamia.M1533},
doi = {10.1197/JAMIA.M1533},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LiuTF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/bibe/ChuangLBMKH04,
author = {Han{-}Yu Chuang and
Hongfang Liu and
Stuart M. Brown and
Cameron McMunn{-}Coffran and
Cheng{-}Yan Kao and
D. Frank Hsu},
title = {Identifying Significant Genes from Microarray Data},
booktitle = {4th {IEEE} International Symposium on BioInformatics and BioEngineering
{(BIBE} 2004), 19-21 March 2004, Taichung, Taiwan},
pages = {358--365},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/BIBE.2004.1317366},
doi = {10.1109/BIBE.2004.1317366},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/bibe/ChuangLBMKH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/ispan/ChuangLCKH04,
author = {Han{-}Yu Chuang and
Hongfang Liu and
Fang{-}An Chen and
Cheng{-}Yan Kao and
D. Frank Hsu},
title = {Combination Methods in Microarray Analysis},
booktitle = {7th International Symposium on Parallel Architectures, Algorithms,
and Networks {(I-SPAN} 2004), 10-12 May 2004, Hong Kong, SAR, China},
pages = {625--630},
publisher = {{IEEE} Computer Society},
year = {2004},
url = {https://doi.org/10.1109/ISPAN.2004.1300548},
doi = {10.1109/ISPAN.2004.1300548},
timestamp = {Fri, 24 Mar 2023 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/ispan/ChuangLCKH04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/medinfo/LiuF04,
author = {Hongfang Liu and
Carol Friedman},
editor = {Marius Fieschi and
Enrico W. Coiera and
Yu{-}Chuan (Jack) Li},
title = {CliniViewer: {A} Tool for Viewing Electronic Medical Records Based
on Natural Language Processing and {XML}},
booktitle = {{MEDINFO} 2004 - Proceedings of the 11th World Congress on Medical
Informatics, San Francisco, California, USA, September 7-11, 2004},
series = {Studies in Health Technology and Informatics},
volume = {107},
pages = {639--643},
publisher = {{IOS} Press},
year = {2004},
url = {https://doi.org/10.3233/978-1-60750-949-3-639},
doi = {10.3233/978-1-60750-949-3-639},
timestamp = {Wed, 17 Aug 2022 16:35:51 +0200},
biburl = {https://dblp.org/rec/conf/medinfo/LiuF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/TuasonCLBF04,
author = {Olivia Tuason and
Lifeng Chen and
Hongfang Liu and
Judith A. Blake and
Carol Friedman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Tiffany A. Jung and
Teri E. Klein},
title = {Biological Nomenclatures: {A} Source of Lexical Knowledge and Ambiguity},
booktitle = {Biocomputing 2004, Proceedings of the Pacific Symposium, Hawaii, USA,
6-10 January 2004},
pages = {238--249},
publisher = {World Scientific},
year = {2004},
url = {http://psb.stanford.edu/psb-online/proceedings/psb04/tuason.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/TuasonCLBF04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/trec/AronsonHIKLMSTWXDL04,
author = {Alan R. Aronson and
Susanne M. Humphrey and
Nicholas C. Ide and
Won Kim and
Russell F. Loane and
James G. Mork and
Lawrence H. Smith and
Lorraine K. Tanabe and
W. John Wilbur and
Natalie Xie and
Dina Demner{-}Fushman and
Hongfang Liu},
editor = {Ellen M. Voorhees and
Lori P. Buckland},
title = {Knowledge-Intensive and Statistical Approaches to the Retrieval and
Annotation of Genomics {MEDLINE} Citations},
booktitle = {Proceedings of the Thirteenth Text REtrieval Conference, {TREC} 2004,
Gaithersburg, Maryland, USA, November 16-19, 2004},
series = {{NIST} Special Publication},
volume = {500-261},
publisher = {National Institute of Standards and Technology {(NIST)}},
year = {2004},
url = {http://trec.nist.gov/pubs/trec13/papers/nlm-umd-ul.geo.pdf},
timestamp = {Wed, 07 Jul 2021 16:44:22 +0200},
biburl = {https://dblp.org/rec/conf/trec/AronsonHIKLMSTWXDL04.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/FriedmanLS03,
author = {Carol Friedman and
Hongfang Liu and
Lyudmila Shagina},
title = {A vocabulary development and visualization tool based on natural language
processing and the mining of textual patient reports},
journal = {J. Biomed. Informatics},
volume = {36},
number = {3},
pages = {189--201},
year = {2003},
url = {https://doi.org/10.1016/j.jbi.2003.08.005},
doi = {10.1016/J.JBI.2003.08.005},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/FriedmanLS03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/psb/LiuF03,
author = {Hongfang Liu and
Carol Friedman},
editor = {Russ B. Altman and
A. Keith Dunker and
Lawrence Hunter and
Teri E. Klein},
title = {Mining Terminological Knowledge in Large Biomedical Corpora},
booktitle = {Proceedings of the 8th Pacific Symposium on Biocomputing, {PSB} 2003,
Lihue, Hawaii, USA, January 3-7, 2003},
pages = {415--426},
year = {2003},
url = {http://psb.stanford.edu/psb-online/proceedings/psb03/liu.pdf},
timestamp = {Thu, 12 Mar 2020 00:00:00 +0100},
biburl = {https://dblp.org/rec/conf/psb/LiuF03.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/LiuJF02,
author = {Hongfang Liu and
Stephen B. Johnson and
Carol Friedman},
title = {Research Paper: Automatic Resolution of Ambiguous Terms Based on Machine
Learning and Conceptual Relations in the {UMLS}},
journal = {J. Am. Medical Informatics Assoc.},
volume = {9},
number = {6},
pages = {621--636},
year = {2002},
url = {https://doi.org/10.1197/jamia.M1101},
doi = {10.1197/JAMIA.M1101},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/LiuJF02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuAF02,
author = {Hongfang Liu and
Alan R. Aronson and
Carol Friedman},
title = {A study of abbreviations in {MEDLINE} abstracts},
booktitle = {{AMIA} 2002, American Medical Informatics Association Annual Symposium,
San Antonio, TX, USA, November 9-13, 2002},
publisher = {{AMIA}},
year = {2002},
url = {https://knowledge.amia.org/amia-55142-a2002a-1.610020/t-001-1.612667/f-001-1.612668/a-093-1.612970/a-094-1.612967},
timestamp = {Wed, 17 Apr 2024 11:48:33 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuAF02.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jbi/LiuLF01,
author = {Hongfang Liu and
Yves A. Lussier and
Carol Friedman},
title = {Disambiguating Ambiguous Biomedical Terms in Biomedical Narrative
Text: An Unsupervised Method},
journal = {J. Biomed. Informatics},
volume = {34},
number = {4},
pages = {249--261},
year = {2001},
url = {https://doi.org/10.1006/jbin.2001.1023},
doi = {10.1006/JBIN.2001.1023},
timestamp = {Tue, 16 Feb 2021 00:00:00 +0100},
biburl = {https://dblp.org/rec/journals/jbi/LiuLF01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/FriedmanLSJH01,
author = {Carol Friedman and
Hongfang Liu and
Lyudmila Shagina and
Stephen B. Johnson and
George Hripcsak},
title = {Evaluating the {UMLS} as a source of lexical knowledge for medical
language processing},
booktitle = {{AMIA} 2001, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 3-7, 2001},
publisher = {{AMIA}},
year = {2001},
url = {https://knowledge.amia.org/amia-55142-a2001a-1.597057/t-001-1.599654/f-001-1.599655/a-038-1.600023/a-039-1.600020},
timestamp = {Wed, 17 Apr 2024 11:48:39 +0200},
biburl = {https://dblp.org/rec/conf/amia/FriedmanLSJH01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuLF01,
author = {Hongfang Liu and
Yves A. Lussier and
Carol Friedman},
title = {A study of abbreviations in the {UMLS}},
booktitle = {{AMIA} 2001, American Medical Informatics Association Annual Symposium,
Washington, DC, USA, November 3-7, 2001},
publisher = {{AMIA}},
year = {2001},
url = {https://knowledge.amia.org/amia-55142-a2001a-1.597057/t-001-1.599654/f-001-1.599655/a-079-1.599902/a-080-1.599899},
timestamp = {Wed, 17 Apr 2024 01:00:00 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuLF01.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/amia/LiuF00,
author = {Hongfang Liu and
Carol Friedman},
title = {A method for vocabulary development and visualization based on medical
language processing and {XML}},
booktitle = {{AMIA} 2000, American Medical Informatics Association Annual Symposium,
Los Angeles, CA, USA, November 4-8, 2000},
publisher = {{AMIA}},
year = {2000},
url = {https://knowledge.amia.org/amia-55142-a2000a-1.606968/t-001-1.609408/f-001-1.609409/a-101-1.609674/a-102-1.609671},
timestamp = {Wed, 17 Apr 2024 11:48:44 +0200},
biburl = {https://dblp.org/rec/conf/amia/LiuF00.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@article{DBLP:journals/jamia/FriedmanHSL99,
author = {Carol Friedman and
George Hripcsak and
Lyudmila Shagina and
Hongfang Liu},
title = {Research Paper: Representing Information in Patient Reports Using
Natural Language Processing and the Extensible Markup Language},
journal = {J. Am. Medical Informatics Assoc.},
volume = {6},
number = {1},
pages = {76--87},
year = {1999},
url = {https://doi.org/10.1136/jamia.1999.0060076},
doi = {10.1136/JAMIA.1999.0060076},
timestamp = {Mon, 11 May 2020 01:00:00 +0200},
biburl = {https://dblp.org/rec/journals/jamia/FriedmanHSL99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
@inproceedings{DBLP:conf/iscas/LiuHH99,
author = {Hongfang Liu and
D. Frank Hsu and
S. Horiguchi},
title = {Generalized shuffle-exchange digraphs: Hamiltonian properties},
booktitle = {Proceedings of the 1999 International Symposium on Circuits and Systems,
{ISCAS} 1999, Orlando, Florida, USA, May 30 - June 2, 1999},
pages = {157--160},
publisher = {{IEEE}},
year = {1999},
url = {https://doi.org/10.1109/ISCAS.1999.780119},
doi = {10.1109/ISCAS.1999.780119},
timestamp = {Wed, 16 Oct 2019 14:14:49 +0200},
biburl = {https://dblp.org/rec/conf/iscas/LiuHH99.bib},
bibsource = {dblp computer science bibliography, https://dblp.org}
}
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