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Jonathan Shapey
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2020 – today
- 2023
- [j6]Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren:
Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: application to surgical imaging. Int. J. Comput. Assist. Radiol. Surg. 18(6): 981-988 (2023) - [j5]Jianghao Wu, Dong Guo, Lu Wang, Shuojue Yang, Yuanjie Zheng, Jonathan Shapey, Tom Vercauteren, Sotirios Bisdas, Robert Bradford, Shakeel R. Saeed, Neil Kitchen, Sébastien Ourselin, Shaoting Zhang, Guotai Wang:
TISS-net: Brain tumor image synthesis and segmentation using cascaded dual-task networks and error-prediction consistency. Neurocomputing 544: 126295 (2023) - [j4]Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, M. Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
CrossMoDA 2021 challenge: Benchmark of cross-modality domain adaptation techniques for vestibular schwannoma and cochlea segmentation. Medical Image Anal. 83: 102628 (2023) - [c5]Charlie Budd, Jianrong Qiu, Oscar MacCormac, Martin Huber, Christopher E. Mower, Mirek Janatka, Théo Trotouin, Jonathan Shapey, Mads S. Bergholt, Tom Vercauteren:
Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing. MICCAI (9) 2023: 658-667 - [i10]Peichao Li, Muhammad Asad, Conor C. Horgan, Oscar MacCormac, Jonathan Shapey, Tom Vercauteren:
Spatial gradient consistency for unsupervised learning of hyperspectral demosaicking: Application to surgical imaging. CoRR abs/2302.10927 (2023) - [i9]Charlie Budd, Jianrong Qiu, Oscar MacCormac, Martin Huber, Christopher E. Mower, Mirek Janatka, Théo Trotouin, Jonathan Shapey, Mads S. Bergholt, Tom Vercauteren:
Deep Reinforcement Learning Based System for Intraoperative Hyperspectral Video Autofocusing. CoRR abs/2307.11638 (2023) - [i8]Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque R. Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, et al.:
MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision. CoRR abs/2308.16139 (2023) - [i7]Navodini Wijethilake, Steve Connor, Anna Oviedova, Rebecca Burger, Tom Vercauteren, Jonathan Shapey:
A Clinical Guideline Driven Automated Linear Feature Extraction for Vestibular Schwannoma. CoRR abs/2310.19392 (2023) - 2022
- [j3]Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Deep learning approach for hyperspectral image demosaicking, spectral correction and high-resolution RGB reconstruction. Comput. methods Biomech. Biomed. Eng. Imaging Vis. 10(4): 409-417 (2022) - [c4]Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey:
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. MLCN@MICCAI 2022: 73-82 - [i6]Reuben Dorent, Aaron Kujawa, Marina Ivory, Spyridon Bakas, Nicola Rieke, Samuel Joutard, Ben Glocker, Jorge Cardoso, Marc Modat, Kayhan Batmanghelich, Arseniy Belkov, Maria G. Baldeon Calisto, Jae Won Choi, Benoit M. Dawant, Hexin Dong, Sergio Escalera, Yubo Fan, Lasse Hansen, Mattias P. Heinrich, Smriti Joshi, Victoriya Kashtanova, Hyeongyu Kim, Satoshi Kondo, Christian N. Kruse, Susana K. Lai-Yuen, Hao Li, Han Liu, Buntheng Ly, Ipek Oguz, Hyungseob Shin, Boris Shirokikh, Zixian Su, Guotai Wang, Jianghao Wu, Yanwu Xu, Kai Yao, Li Zhang, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
CrossMoDA 2021 challenge: Benchmark of Cross-Modality Domain Adaptation techniques for Vestibular Schwnannoma and Cochlea Segmentation. CoRR abs/2201.02831 (2022) - [i5]Navodini Wijethilake, Aaron Kujawa, Reuben Dorent, Muhammad Asad, Anna Oviedova, Tom Vercauteren, Jonathan Shapey:
Boundary Distance Loss for Intra-/Extra-meatal Segmentation of Vestibular Schwannoma. CoRR abs/2208.04680 (2022) - 2021
- [j2]Jonathan Shapey, Thomas Dowrick, Rémi Delaunay, Eleanor C. Mackle, Stephen A. Thompson, Mirek Janatka, Roland Guichard, Anastasis Georgoulas, David Pérez-Suárez, Robert Bradford, Shakeel R. Saeed, Sébastien Ourselin, Matthew J. Clarkson, Tom Vercauteren:
Integrated multi-modality image-guided navigation for neurosurgery: open-source software platform using state-of-the-art clinical hardware. Int. J. Comput. Assist. Radiol. Surg. 16(8): 1347-1356 (2021) - [c3]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for End-to-End Weakly Supervised Image Segmentation. MICCAI (2) 2021: 615-624 - [i4]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Aaron Kujawa, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Inter Extreme Points Geodesics for Weakly Supervised Segmentation. CoRR abs/2107.00583 (2021) - [i3]Peichao Li, Michael Ebner, Philip J. Noonan, Conor C. Horgan, Anisha Bahl, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Deep Learning Approach for Hyperspectral Image Demosaicking, Spectral Correction and High-resolution RGB Reconstruction. CoRR abs/2109.01403 (2021) - 2020
- [j1]Hari McGrath, Peichao Li, Reuben Dorent, Robert Bradford, Shakeel R. Saeed, Sotirios Bisdas, Sébastien Ourselin, Jonathan Shapey, Tom Vercauteren:
Manual segmentation versus semi-automated segmentation for quantifying vestibular schwannoma volume on MRI. Int. J. Comput. Assist. Radiol. Surg. 15(9): 1445-1455 (2020) - [c2]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel R. Saeed, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Scribble-Based Domain Adaptation via Co-segmentation. MICCAI (1) 2020: 479-489 - [i2]Reuben Dorent, Samuel Joutard, Jonathan Shapey, Sotirios Bisdas, Neil Kitchen, Robert Bradford, Shakeel R. Saeed, Marc Modat, Sébastien Ourselin, Tom Vercauteren:
Scribble-based Domain Adaptation via Co-segmentation. CoRR abs/2007.03632 (2020)
2010 – 2019
- 2019
- [c1]Guotai Wang, Jonathan Shapey, Wenqi Li, Reuben Dorent, Alex Demitriadis, Sotirios Bisdas, Ian Paddick, Robert Bradford, Shaoting Zhang, Sébastien Ourselin, Tom Vercauteren:
Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. MICCAI (2) 2019: 264-272 - [i1]Guotai Wang, Jonathan Shapey, Wenqi Li, Reuben Dorent, Alex Demitriadis, Sotirios Bisdas, Ian Paddick, Robert Bradford, Sébastien Ourselin, Tom Vercauteren:
Automatic Segmentation of Vestibular Schwannoma from T2-Weighted MRI by Deep Spatial Attention with Hardness-Weighted Loss. CoRR abs/1906.03906 (2019)
Coauthor Index
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