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Michael J. Holst
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Publications
- 2020
- [j28]Christopher T. Lee, Justin G. Laughlin, Nils Angliviel de La Beaumelle, Rommie E. Amaro, James Andrew McCammon, Ravi Ramamoorthi, Michael J. Holst, Padmini Rangamani:
3D mesh processing using GAMer 2 to enable reaction-diffusion simulations in realistic cellular geometries. PLoS Comput. Biol. 16(4) (2020) - [i3]Padmini Rangamani, Ali Behzadan, Michael J. Holst:
Local sensitivity analysis of the 'Membrane shape equation' derived from the Helfrich energy. CoRR abs/2005.12550 (2020) - 2019
- [j27]Christopher T. Lee, John B. Moody, Rommie E. Amaro, James Andrew McCammon, Michael J. Holst:
The Implementation of the Colored Abstract Simplicial Complex and Its Application to Mesh Generation. ACM Trans. Math. Softw. 45(3): 28:1-28:20 (2019) - 2018
- [i1]Christopher T. Lee, John B. Moody, Rommie E. Amaro, James Andrew McCammon, Michael J. Holst:
The Implementation of the Colored Abstract Simplicial Complex and its Application to Mesh Generation. CoRR abs/1807.01417 (2018) - 2015
- [j26]Michael J. Holst, Sara N. Pollock, Yunrong Zhu:
Convergence of goal-oriented adaptive finite element methods for semilinear problems. Comput. Vis. Sci. 17(1): 43-63 (2015) - 2014
- [j25]Blanca Ayuso de Dios, Michael J. Holst, Yunrong Zhu, Ludmil T. Zikatanov:
Multilevel preconditioners for discontinuous, Galerkin approximations of elliptic problems, with jump coefficients. Math. Comput. 83(287): 1083-1120 (2014) - 2013
- [j24]Zhanheng Gao, Zeyun Yu, Michael J. Holst:
Feature-preserving surface mesh smoothing via suboptimal Delaunay triangulation. Graph. Model. 75(1): 23-38 (2013) - [p2]Michael J. Holst, Ryan Szypowski, Yunrong Zhu:
Adaptive Finite Element Methods with Inexact Solvers for the Nonlinear Poisson-Boltzmann Equation. Domain Decomposition Methods in Science and Engineering XX 2013: 167-174 - [p1]Blanca Ayuso de Dios, Michael J. Holst, Yunrong Zhu, Ludmil T. Zikatanov:
Multigrid Preconditioner for Nonconforming Discretization of Elliptic Problems with Jump Coefficients. Domain Decomposition Methods in Science and Engineering XX 2013: 183-190 - [e1]Randolph E. Bank, Michael J. Holst, Olof B. Widlund, Jinchao Xu:
Domain Decomposition Methods in Science and Engineering XX. Lecture Notes in Computational Science and Engineering 91, Springer 2013, ISBN 978-3-642-35274-4 [contents] - 2012
- [j23]Zhanheng Gao, Zeyun Yu, Michael J. Holst:
Quality tetrahedral mesh smoothing via boundary-optimized Delaunay triangulation. Comput. Aided Geom. Des. 29(9): 707-721 (2012) - [j22]Long Chen, Michael J. Holst, Jinchao Xu, Yunrong Zhu:
Local multilevel preconditioners for elliptic equations with jump coefficients on bisection grids. Comput. Vis. Sci. 15(5): 271-289 (2012) - 2011
- [j18]Zeyun Yu, Guangming Yao, Masahiko Hoshijima, Anushka Michailova, Michael J. Holst:
Multiscale Modeling of Calcium Dynamics in Ventricular Myocytes With Realistic Transverse Tubules. IEEE Trans. Biomed. Eng. 58(10): 2947-2951 (2011) - 2010
- [j17]Benzhuo Lu, Michael J. Holst, James Andrew McCammon, Yongcheng Zhou:
Poisson-Nernst-Planck equations for simulating biomolecular diffusion-reaction processes I: Finite element solutions. J. Comput. Phys. 229(19): 6979-6994 (2010) - [j15]Yuhui Cheng, Zeyun Yu, Masahiko Hoshijima, Michael J. Holst, Andrew D. McCulloch, James Andrew McCammon, Anushka Michailova:
Numerical Analysis of Ca2+ Signaling in Rat Ventricular Myocytes with Realistic Transverse-Axial Tubular Geometry and Inhibited Sarcoplasmic Reticulum. PLoS Comput. Biol. 6(10) (2010) - 2009
- [j14]Long Chen, Michael J. Holst, Jinchao Xu:
Convergence and optimality of adaptive mixed finite element methods. Math. Comput. 78(265): 35-53 (2009) - [c1]Yuhui Cheng, Michael J. Holst, James Andrew McCammon:
Finite Element Analysis of Drug Electrostatic Diffusion: Inhibition Rate Studies in N1 Neuraminidase. Pacific Symposium on Biocomputing 2009: 281-292 - 2007
- [j13]Long Chen, Michael J. Holst, Jinchao Xu:
The Finite Element Approximation of the Nonlinear Poisson-Boltzmann Equation. SIAM J. Numer. Anal. 45(6): 2298-2320 (2007) - 2003
- [j10]Randolph E. Bank, Michael J. Holst:
A New Paradigm for Parallel Adaptive Meshing Algorithms. SIAM Rev. 45(2): 291-323 (2003) - 2001
- [j7]Nathan A. Baker, David Sept, Michael J. Holst, James Andrew McCammon:
The adaptive multilevel finite element solution of the Poisson-Boltzmann equation on massively parallel computers. IBM J. Res. Dev. 45(3): 427-438 (2001) - [j6]Michael J. Holst, Nathan A. Baker, Feng Wang:
ErratumAdaptive multilevel finite element solution of the Poisson-Boltzmann equation I. Algorithms and examples. J. Comput. Chem. 22(4): 475 (2001) - 2000
- [j5]Michael J. Holst, Nathan A. Baker, Feng Wang:
Adaptive multilevel finite element solution of the Poisson-Boltzmann equation I. Algorithms and examples. J. Comput. Chem. 21(15): 1319-1342 (2000) - [j4]Michael J. Holst, Nathan A. Baker, Feng Wang:
Adaptive multilevel finite element solution of the Poisson-Boltzmann equation II. Refinement at solvent-accessible surfaces in biomolecular systems. J. Comput. Chem. 21(15): 1343-1352 (2000) - [j3]Randolph E. Bank, Michael J. Holst:
A New Paradigm for Parallel Adaptive Meshing Algorithms. SIAM J. Sci. Comput. 22(4): 1411-1443 (2000)
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