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Denis Thieffry
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Publications
- 2021
- [j31]Anna Niarakis, Martin Kuiper, Marek Ostaszewski, Rahuman S. Malik-Sheriff, Cristina Casals-Casas, Denis Thieffry, Tom C. Freeman, Paul D. Thomas, Vasundra Touré, Vincent Noël, Gautier Stoll, Julio Saez-Rodriguez, Aurélien Naldi, Eugenia Oshurko, Ioannis Xenarios, Sylvain Soliman, Claudine Chaouiya, Tomás Helikar, Laurence Calzone:
Setting the basis of best practices and standards for curation and annotation of logical models in biology - highlights of the [BC]2 2019 CoLoMoTo/SysMod Workshop. Briefings Bioinform. 22(2): 1848-1859 (2021) - 2015
- [j24]Aurélien Naldi, Pedro T. Monteiro, Christoph Müssel, Hans A. Kestler, Denis Thieffry, Ioannis Xenarios, Julio Saez-Rodriguez, Tomás Helikar, Claudine Chaouiya:
Cooperative development of logical modelling standards and tools with CoLoMoTo. Bioinform. 31(7): 1154-1159 (2015) - [j23]Claudine Chaouiya, Sarah M. Keating, Duncan Bérenguier, Aurélien Naldi, Denis Thieffry, Martijn P. van Iersel, Nicolas Le Novère, Tomás Helikar:
The Systems Biology Markup Language (SBML) Level 3 Package: Qualitative Models, Version 1, Release 1. J. Integr. Bioinform. 12(2) (2015) - 2013
- [j20]Claudine Chaouiya, Duncan Bérenguier, Sarah M. Keating, Aurélien Naldi, Martijn P. van Iersel, Nicolas Rodriguez, Andreas Dräger, Finja Büchel, Thomas Cokelaer, Bryan M. Kowal, Benjamin Wicks, Emanuel J. V. Gonçalves, Julien Dorier, Michel Page, Pedro T. Monteiro, Axel von Kamp, Ioannis Xenarios, Hidde de Jong, Michael Hucka, Steffen Klamt, Denis Thieffry, Nicolas Le Novère, Julio Saez-Rodriguez, Tomás Helikar:
SBML qualitative models: a model representation format and infrastructure to foster interactions between qualitative modelling formalisms and tools. BMC Syst. Biol. 7: 135 (2013) - 2011
- [j17]Claudine Chaouiya, Aurélien Naldi, Elisabeth Remy, Denis Thieffry:
Petri net representation of multi-valued logical regulatory graphs. Nat. Comput. 10(2): 727-750 (2011) - [j16]Aurélien Naldi, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya:
Dynamically consistent reduction of logical regulatory graphs. Theor. Comput. Sci. 412(21): 2207-2218 (2011) - 2010
- [j14]Aurélien Naldi, Jorge Carneiro, Claudine Chaouiya, Denis Thieffry:
Diversity and Plasticity of Th Cell Types Predicted from Regulatory Network Modelling. PLoS Comput. Biol. 6(9) (2010) - [c10]Claudine Chaouiya, Aurélien Naldi, Elisabeth Remy, Denis Thieffry:
Reduction of Logical Models of Regulatory Networks Yields Insight into Dynamical properties. CCA 2010: 524-529 - 2009
- [j12]Aurélien Naldi, Duncan Bérenguier, Adrien Fauré, F. Lopez, Denis Thieffry, Claudine Chaouiya:
Logical modelling of regulatory networks with GINsim 2.3. Biosyst. 97(2): 134-139 (2009) - [c9]Aurélien Naldi, Elisabeth Remy, Denis Thieffry, Claudine Chaouiya:
A Reduction of Logical Regulatory Graphs Preserving Essential Dynamical Properties. CMSB 2009: 266-280 - 2007
- [c7]Aurélien Naldi, Denis Thieffry, Claudine Chaouiya:
Decision Diagrams for the Representation and Analysis of Logical Models of Genetic Networks. CMSB 2007: 233-247 - 2006
- [c6]Adrien Fauré, Aurélien Naldi, Claudine Chaouiya, Denis Thieffry:
Dynamical analysis of a generic Boolean model for the control of the mammalian cell cycle. ISMB (Supplement of Bioinformatics) 2006: 124-131
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