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ORCIDIna Koch
Publications
- 2024
[j48]Florian J. Gisdon
, Mariella Zunker, Jan Niclas Wolf, Kai Prüfer, Jörg Ackermann, Christoph Welsch, Ina Koch:
Graph-theoretical prediction of biological modules in quaternary structures of large protein complexes. Bioinform. 40(3) (2024)- 2023
- [j47]Yauheniya Zhdanovich, Jörg Ackermann, Peter J. Wild, Jens Köllermann, Katrin Bankov, Claudia Döring, Nadine Flinner, Henning Reis, Mike Wenzel, Benedikt Höh, Philipp Mandel, Thomas J. Vogl, Patrick Harter, Katharina Filipski, Ina Koch, Simon Bernatz:
Evaluation of automatic discrimination between benign and malignant prostate tissue in the era of high precision digital pathology. BMC Bioinform. 24(1): 1 (2023) - [j46]Simon Bernatz, Ines Böth, Jörg Ackermann, Iris Burck, Scherwin Mahmoudi, Lukas Lenga, Simon S. Martin, Jan-Erik Scholtz, Vitali Koch, Leon D. Grünewald, Ina Koch, Timo Stöver, Peter J. Wild, Ria Winkelmann, Thomas J. Vogl, Daniel Pinto dos Santos:
Radiomics for therapy-specific head and neck squamous cell carcinoma survival prognostication (part I). BMC Medical Imaging 23(1): 71 (2023) - [j45]Julienne Siptroth, Olga Moskalenko, Carsten Krumbiegel, Jörg Ackermann, Ina Koch, Heike Pospisil:
Investigation of metabolic pathways from gut microbiome analyses regarding type 2 diabetes mellitus using artificial neural networks. Discov. Artif. Intell. 3(1) (2023) - 2022
- [j44]Kira Trares, Jörg Ackermann, Ina Koch:
The canonical and non-canonical NF-κB pathways and their crosstalk: A comparative study based on Petri nets. Biosyst. 211: 104564 (2022) - [j42]Leonie Amstein, Jörg Ackermann, Jennifer Hannig, Ivan Dikic, Simone Fulda, Ina Koch:
Mathematical modeling of the molecular switch of TNFR1-mediated signaling pathways applying Petri net formalism and in silico knockout analysis. PLoS Comput. Biol. 18(8) (2022) - 2021
- [j41]Jan Niclas Wolf, Marcus Keßler, Jörg Ackermann, Ina Koch:
PTGL: extension to graph-based topologies of cryo-EM data for large protein structures. Bioinform. 37(7): 1032-1034 (2021) - [j40]Scherwin Mahmoudi, Simon S. Martin, Jörg Ackermann, Yauheniya Zhdanovich, Ina Koch, Thomas J. Vogl, Moritz H. Albrecht, Lukas Lenga, Simon Bernatz:
Potential of high dimensional radiomic features to assess blood components in intraaortic vessels in non-contrast CT scans. BMC Medical Imaging 21(1): 123 (2021) - 2020
- [j39]Jennifer Hannig, Hendrik Schäfer, Jörg Ackermann, Marie Hebel, Tim Schäfer, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch:
Bioinformatics analysis of whole slide images reveals significant neighborhood preferences of tumor cells in Hodgkin lymphoma. PLoS Comput. Biol. 16(1) (2020) - 2019
- [j38]Jennifer Hannig, Heiko Giese, Börje Schweizer, Leonie Amstein, Jörg Ackermann, Ina Koch:
isiKnock: in silico knockouts in signaling pathways. Bioinform. 35(5): 892-894 (2019) - 2017
- [j36]Leonie Amstein, Jörg Ackermann, Jennifer Scheidel, Simone Fulda, Ivan Dikic, Ina Koch:
Manatee invariants reveal functional pathways in signaling networks. BMC Syst. Biol. 11(1): 72:1-72:11 (2017) - 2016
- [j35]Hendrik Schäfer, Tim Schäfer, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch:
CD30 cell graphs of Hodgkin lymphoma are not scale-free - an image analysis approach. Bioinform. 32(1): 122-129 (2016) - [j32]Melanie Laßek, Jens Weingarten, Martin Wegner, Benjamin F. Mueller, Marion Rohmer, Dominic Baeumlisberger, Tabiwang N. Arrey, Meike Hick, Jörg Ackermann, Amparo Acker-Palmer, Ina Koch, Ulrike Müller, Michael Karas, Walter Volknandt:
APP Is a Context-Sensitive Regulator of the Hippocampal Presynaptic Active Zone. PLoS Comput. Biol. 12(4) (2016) - [j31]Jennifer Scheidel, Leonie Amstein, Jörg Ackermann, Ivan Dikic, Ina Koch:
In Silico Knockout Studies of Xenophagic Capturing of Salmonella. PLoS Comput. Biol. 12(12) (2016) - [p1]Jörg Ackermann, Ina Koch:
Quantitative Analysis. Modeling in Systems Biology, The Petri Net Approach 2016: 153-178 - 2015
- [j30]Heiko Giese, Jörg Ackermann, Heinrich Heide, Lea Bleier, Stefan Dröse, Ilka Wittig, Ulrich Brandt, Ina Koch:
NOVA: a software to analyze complexome profiling data. Bioinform. 31(3): 440-441 (2015) - [j29]Pavel Balazki, Klaus Lindauer, Jens Einloft, Jörg Ackermann, Ina Koch:
MONALISA for stochastic simulations of Petri net models of biochemical systems. BMC Bioinform. 16: 215:1-215:11 (2015) - [j28]Pavel Balazki, Klaus Lindauer, Jens Einloft, Jörg Ackermann, Ina Koch:
Erratum to: MONALISA for stochastic simulations of Petri net models of biochemical systems. BMC Bioinform. 16: 371:1 (2015) - [j27]Bogdan Belean, Monica Borda, Jörg Ackermann, Ina Koch, Ovidiu Balacescu:
Unsupervised image segmentation for microarray spots with irregular contours and inner holes. BMC Bioinform. 16: 412:1-412:12 (2015) - [i1]Heiko Giese, Jörg Ackermann, Ulrich Brandt, Ilka Wittig, Ina Koch:
Cluster analysis and visualization techniques for large datasets in complexome profiling. PeerJ Prepr. 3: e1303 (2015) - 2013
- [j22]Jens Einloft, Jörg Ackermann, Joachim Nöthen, Ina Koch:
MonaLisa - visualization and analysis of functional modules in biochemical networks. Bioinform. 29(11): 1469-1470 (2013) - [j20]Tim Schäfer, Hendrik Schäfer, Alexander Schmitz, Jörg Ackermann, Norbert Dichter, Claudia Döring, Sylvia Hartmann, Martin-Leo Hansmann, Ina Koch:
Image database analysis of Hodgkin lymphoma. Comput. Biol. Chem. 46: 1-7 (2013) - 2008
- [j14]Stefanie Grunwald, Astrid Speer, Jörg Ackermann, Ina Koch:
Petri net modelling of gene regulation of the Duchenne muscular dystrophy. Biosyst. 92(2): 189-205 (2008)
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