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Arvind Gupta
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Publications
- 2012
- [j23]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Algorithm for Haplotype Inference via Galled-Tree Networks with Simple Galls. J. Comput. Biol. 19(4): 439-454 (2012) - 2011
- [c41]Javad Safaei, Ján Manuch, Arvind Gupta, Ladislav Stacho, Steven Pelech:
Evolutionary Conservation of Human Phosphorylation Sites. BIBM 2011: 222-227 - [c39]Ján Manuch, Murray Patterson, Arvind Gupta:
Towards a Characterisation of the Generalised Cladistic Character Compatibility Problem for Non-branching Character Trees. ISBRA 2011: 440-451 - 2010
- [j20]Arvind Gupta, Mohammad M. Karimi, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Haplotype Inferring via Galled-Tree Networks Is NP-Complete. J. Comput. Biol. 17(10): 1435-1449 (2010) - [c38]Javad Safaei, Ján Manuch, Arvind Gupta, Ladislav Stacho, Steven Pelech:
Prediction of human protein kinase substrate specificities. BIBM 2010: 259-264 - 2009
- [j19]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Haplotype inferring via galled-tree networks using a hypergraph covering problem for special genotype matrices. Discret. Appl. Math. 157(10): 2310-2324 (2009) - [j18]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Stable Structure-Approximating Inverse Protein Folding in 2D Hydrophobic-Polar-Cysteine (HPC) Model. J. Comput. Biol. 16(1): 19-30 (2009) - [j17]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Inverse Protein Folding in 3D Hexagonal Prism Lattice under HPC Model. J. Comput. Biol. 16(6): 769-802 (2009) - [c36]Ján Manuch, Murray Patterson, Arvind Gupta:
On the Generalised Character Compatibility Problem for Non-branching Character Trees. COCOON 2009: 268-276 - 2008
- [j16]Arvind Gupta, Jan van den Heuvel, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
On the Complexity of Ordered Colorings. SIAM J. Discret. Math. 22(2): 832-847 (2008) - [c35]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Structure-Approximating Design of Stable Proteins in 2D HP Model Fortified by Cysteine Monomers. APBC 2008: 49-58 - [c34]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
Inverse protein folding in 3D hexagonal prism lattice under HP model. BIOCOMP 2008: 619-625 - [c33]Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey, Arvind Gupta:
A Robust Class of Stable Proteins in the 2D HPC Model. BIRD 2008: 180-192 - [c31]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Haplotype Inferring Via Galled-Tree Networks Is NP-Complete. COCOON 2008: 287-298 - 2007
- [c28]Arvind Gupta, Mehdi Karimi, Alireza Hadj Khodabakhshi, Ján Manuch, Arash Rafiey:
Design of Artificial Tubular Protein Structures in 3D Hexagonal Prism Lattice Under HP Model. BIOCOMP 2007: 362-369 - [c26]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Algorithm for Haplotype Inferring Via Galled-Tree Networks with Simple Galls. ISBRA 2007: 121-132 - 2006
- [j15]Arvind Gupta, Ján Manuch, Xiaohong Zhao, Ladislav Stacho:
Characterization of the Existence of Galled-tree Networks. J. Bioinform. Comput. Biol. 4(6): 1309-1328 (2006) - [c25]Ján Manuch, Xiaohong Zhao, Ladislav Stacho, Arvind Gupta:
Characterization of the Existence of Galled-Tree Networks. APBC 2006: 297-306 - [c24]Jonathan Kavanagh, David G. Mitchell, Eugenia Ternovska, Ján Manuch, Xiaohong Zhao, Arvind Gupta:
Constructing Camin-Sokal Phylogenies Via Answer Set Programming. LPAR 2006: 452-466 - 2005
- [j13]Arvind Gupta, Ján Manuch, Ladislav Stacho, Xiaohong Zhao:
Ordered 3-colorings. Electron. Notes Discret. Math. 22: 299-300 (2005) - [j12]Arvind Gupta, Ján Manuch, Ladislav Stacho:
Structure-Approximating Inverse Protein Folding Problem in the 2D HP Model. J. Comput. Biol. 12(10): 1328-1345 (2005) - 2004
- [c22]Arvind Gupta, Ján Manuch, Ladislav Stacho, Chenchen Zhu:
Small Phylogeny Problem: Character Evolution Trees. CPM 2004: 230-243 - [c21]Arvind Gupta, Ján Manuch, Ladislav Stacho:
Inverse Protein Folding in 2D HP Mode (Extended Abstract). CSB 2004: 311-318 - [c20]Arvind Gupta, Ján Manuch, Ladislav Stacho:
Fault Tolerant Forwarding and Optical Indexes: A Design Theory Approach. SIROCCO 2004: 197-208
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