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Leonid Oliker
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Publications
- 2023
- [i12]Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Extreme-scale many-against-many protein similarity search. CoRR abs/2303.01845 (2023) - 2022
- [c96]Giulia Guidi, Gabriel Raulet, Daniel Rokhsar, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly. ICPP 2022: 82:1-82:11 - [c93]Oguz Selvitopi, Saliya Ekanayake, Giulia Guidi, Muaaz G. Awan, Georgios A. Pavlopoulos, Ariful Azad, Nikos Kyrpides, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Extreme-Scale Many-against-Many Protein Similarity Search. SC 2022: 1:1-1:12 - [i10]Giulia Guidi, Gabriel Raulet, Daniel Rokhsar, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Distributed-Memory Parallel Contig Generation for De Novo Long-Read Genome Assembly. CoRR abs/2207.04350 (2022) - 2021
- [c92]Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. IPDPS 2021: 517-526 - [c91]Israt Nisa, Prashant Pandey, Marquita Ellis, Leonid Oliker, Aydin Buluç, Katherine A. Yelick:
Distributed-Memory k-mer Counting on GPUs. IPDPS 2021: 527-536 - [c89]Muaaz Gul Awan, Steven A. Hofmeyr, Rob Egan, Nan Ding, Aydin Buluç, Jack Deslippe, Leonid Oliker, Katherine A. Yelick:
Accelerating large scale de novo metagenome assembly using GPUs. SC 2021: 7 - 2020
- [j32]Muaaz G. Awan, Jack Deslippe, Aydin Buluç, Oguz Selvitopi, Steven A. Hofmeyr, Leonid Oliker, Katherine A. Yelick:
ADEPT: a domain independent sequence alignment strategy for gpu architectures. BMC Bioinform. 21(1): 406 (2020) - [c88]Francesco Peverelli, Lorenzo Di Tucci, Marco D. Santambrogio, Nan Ding, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
GPU accelerated partial order multiple sequence alignment for long reads self-correction. IPDPS Workshops 2020: 174-182 - [c87]Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. IPDPS 2020: 462-471 - [i9]Katherine A. Yelick, Aydin Buluç, Muaaz G. Awan, Ariful Azad, Benjamin Brock, Rob Egan, Saliya Ekanayake, Marquita Ellis, Evangelos Georganas, Giulia Guidi, Steven A. Hofmeyr, Oguz Selvitopi, Cristina Teodoropol, Leonid Oliker:
The Parallelism Motifs of Genomic Data Analysis. CoRR abs/2001.06989 (2020) - [i8]Marquita Ellis, Giulia Guidi, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
diBELLA: Distributed Long Read to Long Read Alignment. CoRR abs/2001.10049 (2020) - [i7]Alberto Zeni, Giulia Guidi, Marquita Ellis, Nan Ding, Marco D. Santambrogio, Steven A. Hofmeyr, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
LOGAN: High-Performance GPU-Based X-Drop Long-Read Alignment. CoRR abs/2002.05200 (2020) - [i6]Giulia Guidi, Oguz Selvitopi, Marquita Ellis, Leonid Oliker, Katherine A. Yelick, Aydin Buluç:
Parallel String Graph Construction and Transitive Reduction for De Novo Genome Assembly. CoRR abs/2010.10055 (2020) - 2019
- [c83]Marquita Ellis, Giulia Guidi, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
diBELLA: Distributed Long Read to Long Read Alignment. ICPP 2019: 70:1-70:11 - 2018
- [c82]Penporn Koanantakool, Alnur Ali, Ariful Azad, Aydin Buluç, Dmitriy Morozov, Leonid Oliker, Katherine A. Yelick, Sang-Yun Oh:
Communication-Avoiding Optimization Methods for Distributed Massive-Scale Sparse Inverse Covariance Estimation. AISTATS 2018: 1376-1386 - [c80]Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
Extreme scale de novo metagenome assembly. SC 2018: 10:1-10:13 - [i5]Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Eugene Goltsman, Bill Arndt, Andrew Tritt, Aydin Buluç, Leonid Oliker, Katherine A. Yelick:
Extreme Scale De Novo Metagenome Assembly. CoRR abs/1809.07014 (2018) - 2017
- [c78]Marquita Ellis, Evangelos Georganas, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick:
Performance Characterization of De Novo Genome Assembly on Leading Parallel Systems. Euro-Par 2017: 79-91 - [c76]Evangelos Georganas, Marquita Ellis, Rob Egan, Steven A. Hofmeyr, Aydin Buluç, Brandon Cook, Leonid Oliker, Katherine A. Yelick:
MerBench: PGAS Benchmarks for High Performance Genome Assembly. PAW@SC 2017: 5:1-5:4 - [i4]Evangelos Georganas, Steven A. Hofmeyr, Rob Egan, Aydin Buluç, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick:
Extreme-Scale De Novo Genome Assembly. CoRR abs/1705.11147 (2017) - [i3]Penporn Koanantakool, Alnur Ali, Ariful Azad, Aydin Buluç, Dmitriy Morozov, Sang-Yun Oh, Leonid Oliker, Katherine A. Yelick:
Communication-Avoiding Optimization Methods for Massive-Scale Graphical Model Structure Learning. CoRR abs/1710.10769 (2017) - 2016
- [c74]Penporn Koanantakool, Ariful Azad, Aydin Buluç, Dmitriy Morozov, Sang-Yun Oh, Leonid Oliker, Katherine A. Yelick:
Communication-Avoiding Parallel Sparse-Dense Matrix-Matrix Multiplication. IPDPS 2016: 842-853 - [i2]Veronika Strnadová-Neeley, Aydin Buluç, John R. Gilbert, Leonid Oliker, Weimin Ouyang:
LiRa: A New Likelihood-Based Similarity Score for Collaborative Filtering. CoRR abs/1608.08646 (2016) - 2015
- [j28]Adam Lugowski, Shoaib Kamil, Aydin Buluç, Samuel Williams, Erika Duriakova, Leonid Oliker, Armando Fox, John R. Gilbert:
Parallel processing of filtered queries in attributed semantic graphs. J. Parallel Distributed Comput. 79-80: 115-131 (2015) - [j27]Aydin Buluç, Leonid Oliker, John R. Gilbert:
Special issue "Graph analysis for scientific discovery". Parallel Comput. 47: 1-2 (2015) - [c70]Veronika Strnadová-Neeley, Aydin Buluç, Jarrod Chapman, John R. Gilbert, Joseph Gonzalez, Leonid Oliker:
Efficient data reduction for large-scale genetic mapping. BCB 2015: 126-135 - [c67]Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick:
merAligner: A Fully Parallel Sequence Aligner. IPDPS 2015: 561-570 - [c65]Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Steven A. Hofmeyr, Chaitanya Aluru, Rob Egan, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick:
HipMer: an extreme-scale de novo genome assembler. SC 2015: 14:1-14:11 - 2014
- [c64]Veronika Strnadova, Aydin Buluç, Jarrod Chapman, John R. Gilbert, Joseph Gonzalez, Stefanie Jegelka, Daniel Rokhsar, Leonid Oliker:
Efficient and accurate clustering for large-scale genetic mapping. BIBM 2014: 3-10 - [c62]Evangelos Georganas, Aydin Buluç, Jarrod Chapman, Leonid Oliker, Daniel Rokhsar, Katherine A. Yelick:
Parallel De Bruijn Graph Construction and Traversal for De Novo Genome Assembly. SC 2014: 437-448 - 2013
- [c60]Aydin Buluç, Erika Duriakova, Armando Fox, John R. Gilbert, Shoaib Kamil, Adam Lugowski, Leonid Oliker, Samuel Williams:
High-Productivity and High-Performance Analysis of Filtered Semantic Graphs. IPDPS 2013: 237-248 - 2012
- [c57]Aydin Buluç, Armando Fox, John R. Gilbert, Shoaib Kamil, Adam Lugowski, Leonid Oliker, Samuel Williams:
High-performance analysis of filtered semantic graphs. PACT 2012: 463-464 - [c56]Krishna Chaitanya Kandalla, Aydin Buluç, Hari Subramoni, Karen Tomko, Jérôme Vienne, Leonid Oliker, Dhabaleswar K. Panda:
Can Network-Offload Based Non-blocking Neighborhood MPI Collectives Improve Communication Overheads of Irregular Graph Algorithms? CLUSTER Workshops 2012: 222-230 - 2011
- [c51]Aydin Buluç, Samuel Williams, Leonid Oliker, James Demmel:
Reduced-Bandwidth Multithreaded Algorithms for Sparse Matrix-Vector Multiplication. IPDPS 2011: 721-733
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last updated on 2023-12-18 20:28 CET by the dblp team
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