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ORCIDAbdullah N. Arslan
Person information
- affiliation: Texas A&M University Commerce, USA
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Journal Articles
- 2018
[j15]Abdullah N. Arslan:
A fast algorithm for all-pairs Hamming distances. Inf. Process. Lett. 139: 49-52 (2018)- 2017
- [j14]Abdullah N. Arslan, Jithendar Anandan, Eric Fry, Keith Monschke, Nitin Ganneboina, Jason Bowerman:
Efficient RNA structure comparison algorithms. J. Bioinform. Comput. Biol. 15(6): 1740009:1-1740009:27 (2017) - 2015
- [j13]Abdullah N. Arslan, Betsy George, Kirsten Stor:
New algorithms for pattern matching with wildcards and length constraints. Discret. Math. Algorithms Appl. 7(3): 1550032:1-1550032:13 (2015) - [j12]Abdullah N. Arslan:
Fast Algorithms for Local Similarity Queries in Two Sequences. Int. J. Found. Comput. Sci. 26(5): 625-642 (2015) - [j11]Abdullah N. Arslan, Dan He, Yu He, Xindong Wu:
Pattern matching with wildcards and length constraints using maximum network flow. J. Discrete Algorithms 35: 9-16 (2015) - 2013
- [j10]Xindong Wu, Xingquan Zhu
, Yu He, Abdullah N. Arslan:
PMBC: Pattern mining from biological sequences with wildcard constraints. Comput. Biol. Medicine 43(5): 481-492 (2013) - 2008
- [j9]Abdullah N. Arslan:
An algorithm with linear expected running time for string editing with substitutions and substring reversals. Inf. Process. Lett. 106(5): 213-218 (2008) - 2007
- [j8]Abdullah N. Arslan:
Regular expression constrained sequence alignment. J. Discrete Algorithms 5(4): 647-661 (2007) - 2006
- [j7]Dan He, Abdullah N. Arslan, Alan C. H. Ling:
A Fast Algorithm for the Constrained Multiple Sequence Alignment Problem. Acta Cybern. 17(4): 701-717 (2006) - [j6]Gong Chen, Xindong Wu, Xingquan Zhu, Abdullah N. Arslan, Yu He:
Efficient string matching with wildcards and length constraints. Knowl. Inf. Syst. 10(4): 399-419 (2006) - 2005
- [j5]Abdullah N. Arslan, Ömer Egecioglu:
Algorithms For The Constrained Longest Common Subsequence Problems. Int. J. Found. Comput. Sci. 16(6): 1099-1109 (2005) - 2004
- [j4]Abdullah N. Arslan, Ömer Egecioglu:
Dictionary Look-Up Within Small Edit Distance. Int. J. Found. Comput. Sci. 15(1): 57-71 (2004) - [j3]Abdullah N. Arslan, Ömer Egecioglu:
Dynamic Programming Based Approximation Algorithms for Sequence Alignment with Constraints. INFORMS J. Comput. 16(4): 441-458 (2004) - 2002
- [j2]Abdullah N. Arslan, Ömer Egecioglu:
Approximation Algorithms for Local Alignment with Length Constraints. Int. J. Found. Comput. Sci. 13(5): 751-767 (2002) - 2001
- [j1]Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner:
A new approach to sequence comparison: normalized sequence alignment. Bioinform. 17(4): 327-337 (2001)
Conference and Workshop Papers
- 2021
- [c27]Abdullah N. Arslan, Mutlu Mete, Anjali Kumari:
RNA Secondary Structure Database, Analysis Tool-Set, and Case-Study Results on SARS-CoV-2. BIBM 2021: 2471-2478 - 2018
- [c26]Keith A. Monschke, Abdullah N. Arslan:
RNA secondary structure graphical rendering library. CIBCB 2018: 1-6 - 2017
- [c25]Abdullah N. Arslan, Nikolay Metodiev Sirakov:
Shape Matching for Rigid Objects by Aligning Sequences Based on Boundary Change Points. IWCIA 2017: 308-321 - 2012
- [c24]Abdullah N. Arslan, Nikolay Metodiev Sirakov, Salvatore Attardo:
Weapon ontology annotation using boundary describing sequences. SSIAI 2012: 101-104 - 2010
- [c23]Abdullah N. Arslan, Arvind Chidri:
An Efficient Multiplication Algorithm for Thin Matrices and for Matrices with Similar Rows and Columns. CSC 2010: 147-152 - [c22]Abdullah N. Arslan:
A Fast Longest Common Subsequence Algorithm for Similar Strings. LATA 2010: 82-93 - 2007
- [c21]Abdullah N. Arslan, Peyman Bizargity:
Phylogeny By Top Down Clustering Using a Given Multiple Alignment. BIBE 2007: 809-814 - [c20]Dan He, Abdullah N. Arslan, Yu He, Xindong Wu:
Iterative Refinement of Repeat Sequence Specification Using Constrained Pattern Matching. BIBE 2007: 1199-1203 - [c19]Abdullah N. Arslan:
A Largest Common d-Dimensional Subsequence of Two d-Dimensional Strings. FCT 2007: 40-51 - [c18]Yu He, Xindong Wu, Xingquan Zhu, Abdullah N. Arslan:
Mining Frequent Patterns with Wildcards from Biological Sequences. IRI 2007: 329-334 - 2006
- [c17]Abdullah N. Arslan, Dan He:
An improved algorithm for the regular expression constrained multiple sequence alignment problem. BIBE 2006: 121-126 - [c16]Abdullah N. Arslan:
An algorithm for string edit distance allowing substring reversals. BIBE 2006: 220-226 - [c15]Dan He, Abdullah N. Arslan:
Space-Efficient Parallel Algorithms for the Constrained Multiple Sequence Alignment Problem. BIOCOMP 2006: 10-16 - [c14]Elena Zheleva, Abdullah N. Arslan:
Fast Motif Search in Protein Sequence Databases. CSR 2006: 670-681 - [c13]Dan He, Abdullah N. Arslan:
FastPCMSA: An Improved Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem. FCS 2006: 88-94 - [c12]Dan He, Abdullah N. Arslan:
A* Algorithms for the Constrained Multiple Sequence Alignment Problem. IC-AI 2006: 479-485 - [c11]Abdullah N. Arslan:
Efficient Approximate Dictionary Look-Up for Long Words over Small Alphabets. LATIN 2006: 118-129 - 2005
- [c10]Dan He, Abdullah N. Arslan:
A Parallel Algorithm for the Constrained Multiple Sequence Alignment Problem. BIBE 2005: 258-262 - [c9]Abdullah N. Arslan:
Multiple Sequence Alignment Containing a Sequence of Regular Expressions. CIBCB 2005: 230-236 - [c8]Abdullah N. Arslan:
Regular Expression Constrained Sequence Alignment. CPM 2005: 322-333 - 2004
- [c7]Abdullah N. Arslan, Ömer Egecioglu:
Algorithms for the Constrained Longest Common Subsequence Problems. Stringology 2004: 24-32 - 2002
- [c6]Abdullah N. Arslan, Ömer Egecioglu:
Dictionary Look-Up within Small Edit Distance. COCOON 2002: 127-136 - [c5]Abdullah N. Arslan, Ömer Egecioglu:
Algorithms for Local Alignment with Length Constraints. LATIN 2002: 38-51 - [c4]Abdullah N. Arslan, Ömer Egecioglu:
Efficient Computation of Long Similar Subsequences. SPIRE 2002: 77-90 - 2001
- [c3]Abdullah N. Arslan, Ömer Egecioglu:
An Improved Upper Bound on the Size of Planar Convex-Hulls. COCOON 2001: 111-120 - [c2]Abdullah N. Arslan, Ömer Egecioglu, Pavel A. Pevzner:
A new approach to sequence comparison: normalized sequence alignment. RECOMB 2001: 2-11 - 1999
- [c1]Abdullah N. Arslan, Ömer Egecioglu:
An Efficient Uniform-Cost Normalized Edit Distance Algorithm. SPIRE/CRIWG 1999: 8-15
Parts in Books or Collections
- 2018
- [p1]Abdullah N. Arslan, Ömer Egecioglu:
Dynamic and Fractional Programming Based Approximation Algorithms for Sequence Alignment with Constraints. Handbook of Approximation Algorithms and Metaheuristics (2) 2018
Reference Works
- 2009
- [r2]Abdullah N. Arslan:
Guided Sequence Alignment. Encyclopedia of Data Warehousing and Mining 2009: 964-969 - 2007
- [r1]Ömer Egecioglu, Abdullah N. Arslan:
Dynamic and Fractional Programming-Based Approximation Algorithms for Sequence Alignment with Constraints. Handbook of Approximation Algorithms and Metaheuristics 2007
Coauthor Index
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