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- affiliation: Boston University, Department of Electrical and Computer Engineering, MA, USA
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Journal Articles
- 2023
[j28]Jing Li
, Martin C. Herbordt:
Introduction to the Special Section on FCCM 2022. ACM Trans. Reconfigurable Technol. Syst. 16(4): 51:1-51:2 (2023)- 2022
- [j27]Pouya Haghi, Anqi Guo, Qingqing Xiong, Chen Yang, Tong Geng, Justin T. Broaddus, Ryan J. Marshall, Derek Schafer, Anthony Skjellum, Martin C. Herbordt:
Reconfigurable switches for high performance and flexible MPI collectives. Concurr. Comput. Pract. Exp. 34(6) (2022) - [j26]Christophe Bobda, Joel Mandebi Mbongue, Paul Chow, Mohammad Ewais, Naif Tarafdar, Juan Camilo Vega, Ken Eguro, Dirk Koch, Suranga Handagala, Miriam Leeser, Martin C. Herbordt, Hafsah Shahzad, H. Peter Hofstee, Burkhard Ringlein, Jakub Szefer, Ahmed Sanaullah, Russell Tessier:
The Future of FPGA Acceleration in Datacenters and the Cloud. ACM Trans. Reconfigurable Technol. Syst. 15(3): 34:1-34:42 (2022) - 2021
- [j25]Tong Geng, Ang Li, Tianqi Wang, Chunshu Wu, Yanfei Li, Runbin Shi, Wei Wu, Martin C. Herbordt:
O3BNN-R: An Out-of-Order Architecture for High-Performance and Regularized BNN Inference. IEEE Trans. Parallel Distributed Syst. 32(1): 199-213 (2021) - 2020
- [j24]Tianqi Wang, Tong Geng, Ang Li, Xi Jin, Martin C. Herbordt:
FPDeep: Scalable Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters. IEEE Trans. Computers 69(8): 1143-1158 (2020) - 2018
- [j23]Ahmed Sanaullah, Chen Yang, Yuri Alexeev, Kazutomo Yoshii, Martin C. Herbordt:
Real-time data analysis for medical diagnosis using FPGA-accelerated neural networks. BMC Bioinform. 19-S(18): 19-31 (2018) - 2016
- [j22]Jie Meng, Eduard Llamosí, Fulya Kaplan, Chulian Zhang, Jiayi Sheng, Martin C. Herbordt, Gunar Schirner, Ayse K. Coskun:
Communication and cooling aware job allocation in data centers for communication-intensive workloads. J. Parallel Distributed Comput. 96: 181-193 (2016) - [j21]Jiayi Sheng, Qingqing Xiong, Chen Yang, Martin C. Herbordt:
Collective Communication on FPGA Clusters with Static Scheduling. SIGARCH Comput. Archit. News 44(4): 2-7 (2016) - 2015
- [j20]Atabak Mahram, Martin C. Herbordt:
NCBI BLASTP on High-Performance Reconfigurable Computing Systems. ACM Trans. Reconfigurable Technol. Syst. 7(4): 33:1-33:20 (2015) - 2013
- [j19]Atabak Mahram, Martin C. Herbordt:
NCBI BLASTP on the convey HC1-EX. SIGARCH Comput. Archit. News 41(5): 41-46 (2013) - 2011
- [j18]Md. Ashfaquzzaman Khan, Martin C. Herbordt:
Parallel discrete molecular dynamics simulation with speculation and in-order commitment. J. Comput. Phys. 230(17): 6563-6582 (2011) - 2010
- [j17]Bharat Sukhwani, Martin C. Herbordt:
FPGA acceleration of rigid-molecule docking codes. IET Comput. Digit. Tech. 4(3): 184-195 (2010) - [j16]Matt Chiu, Martin C. Herbordt:
Molecular Dynamics Simulations on High-Performance Reconfigurable Computing Systems. ACM Trans. Reconfigurable Technol. Syst. 3(4): 23:1-23:37 (2010) - 2009
- [j15]Tom Van Court, Martin C. Herbordt:
Elements of High-Performance Reconfigurable Computing. Adv. Comput. 75: 113-157 (2009) - 2008
- [j14]Martin C. Herbordt, Yongfeng Gu, Tom Van Court, Josh Model, Bharat Sukhwani, Matt Chiu:
Computing Models for FPGA-Based Accelerators. Comput. Sci. Eng. 10(6): 35-45 (2008) - [j13]Yongfeng Gu, Tom Van Court, Martin C. Herbordt:
Explicit design of FPGA-based coprocessors for short-range force computations in molecular dynamics simulations. Parallel Comput. 34(4-5): 261-277 (2008) - 2007
- [j12]Martin C. Herbordt, Tom Van Court, Yongfeng Gu, Bharat Sukhwani, Al Conti, Josh Model, Douglas DiSabello:
Achieving High Performance with FPGA-Based Computing. Computer 40(3): 50-57 (2007) - [j11]Tom Van Court, Martin C. Herbordt:
Families of FPGA-based accelerators for approximate string matching. Microprocess. Microsystems 31(2): 135-145 (2007) - [j10]Martin C. Herbordt, Josh Model, Bharat Sukhwani, Yongfeng Gu, Tom Van Court:
Single pass streaming BLAST on FPGAs. Parallel Comput. 33(10-11): 741-756 (2007) - 2006
- [j9]Tom Van Court, Yongfeng Gu, Vikas Mundada, Martin C. Herbordt:
Rigid Molecule Docking: FPGA Reconfiguration for Alternative Force Laws. EURASIP J. Adv. Signal Process. 2006 (2006) - 2004
- [j8]Martin C. Herbordt, Jade Cravy, Honghai Zhang:
Array control for high-performance SIMD systems. J. Parallel Distributed Comput. 64(3): 400-413 (2004) - [j7]Tom Van Court, Martin C. Herbordt, Richard J. Barton:
Case study of a functional genomics application for an FPGA-based coprocessor. Microprocess. Microsystems 28(5-6): 213-222 (2004) - 2000
- [j6]Martin C. Herbordt, Jade Cravy, Renoy Sam, Owais Kidwai, Calvin Lin:
A System for Evaluating Performance and Cost of SIMD Array Designs. J. Parallel Distributed Comput. 60(2): 217-246 (2000) - 1999
- [j5]Bojana Obrenic, Martin C. Herbordt, Arnold L. Rosenberg, Charles C. Weems:
Using Emulations to Enhance the Performance of Parallel Architectures. IEEE Trans. Parallel Distributed Syst. 10(10): 1067-1081 (1999) - 1995
- [j4]Martin C. Herbordt, Charles C. Weems:
Enpassant: An Environment for Evaluating Massively Parallel Array Architectures for Spatially Mapped Applications. Int. J. Pattern Recognit. Artif. Intell. 9(2): 175-200 (1995) - 1994
- [j3]Martin C. Herbordt, James C. Corbett, Charles C. Weems, John Spalding:
Practical Algorithms for Online Routing on Fixed and Reconfigurable Meshes. J. Parallel Distributed Comput. 20(3): 341-356 (1994) - 1992
- [j2]Martin C. Herbordt, Charles C. Weems, Michael J. Scudder:
Nonuniform region processing on SIMD arrays using the coterie network. Mach. Vis. Appl. 5(2): 105-125 (1992) - 1991
- [j1]Martin C. Herbordt, Charles C. Weems, James C. Corbett:
Message-passing algorithms for a SIMD torus with coteries. SIGARCH Comput. Archit. News 19(1): 69-78 (1991)
Conference and Workshop Papers
- 2023
- [c112]Robert Munafo, Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Ulrich Drepper, Martin C. Herbordt:
Improved Models for Policy-Agent Learning of Compiler Directives in HLS. HPEC 2023: 1-8 - [c111]Anqi Guo, Yuchen Hao, Chunshu Wu, Pouya Haghi, Zhenyu Pan, Min Si, Dingwen Tao, Ang Li, Martin C. Herbordt, Tong Geng:
Software-Hardware Co-design of Heterogeneous SmartNIC System for Recommendation Models Inference and Training. ICS 2023: 336-347 - [c110]Pouya Haghi, William Krska, Cheng Tan, Tong Geng, Po-Hao Chen, Connor Greenwood, Anqi Guo, Thomas M. Hines, Chunshu Wu, Ang Li, Anthony Skjellum, Martin C. Herbordt:
FLASH: FPGA-Accelerated Smart Switches with GCN Case Study. ICS 2023: 450-462 - [c109]Chunshu Wu, Tong Geng, Anqi Guo, Sahan Bandara, Pouya Haghi, Chuan Liu, Ang Li, Martin C. Herbordt:
FASDA: An FPGA-Aided, Scalable and Distributed Accelerator for Range-Limited Molecular Dynamics. SC 2023: 98:1-98:14 - 2022
- [c108]Anqi Guo, Tong Geng, Yongan Zhang, Pouya Haghi, Chunshu Wu, Cheng Tan, Yingyan Lin, Ang Li, Martin C. Herbordt:
FCsN: A FPGA-Centric SmartNIC Framework for Neural Networks. FCCM 2022: 1-2 - [c107]Rushi Patel, Pouya Haghi, Shweta Jain, Andriy Kot, Venkata Krishnan, Mayank Varia, Martin C. Herbordt:
COPA Use Case: Distributed Secure Joint Computation. FCCM 2022: 1-2 - [c106]Anqi Guo, Tong Geng, Yongan Zhang, Pouya Haghi, Chunshu Wu, Cheng Tan, Yingyan Lin, Ang Li, Martin C. Herbordt:
A Framework for Neural Network Inference on FPGA-Centric SmartNICs. FPL 2022: 1-8 - [c105]Chunshu Wu, Sahan Bandara, Tong Geng, Anqi Guo, Pouya Haghi, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Optimized Mappings for Symmetric Range-Limited Molecular Force Calculations on FPGAs. FPL 2022: 101-108 - [c104]Chengming Zhang, Tong Geng, Anqi Guo, Jiannan Tian, Martin C. Herbordt, Ang Li, Dingwen Tao:
H-GCN: A Graph Convolutional Network Accelerator on Versal ACAP Architecture. FPL 2022: 200-208 - [c103]Sahan Bandara, Ahmed Sanaullah, Zaid Tahir, Ulrich Drepper, Martin C. Herbordt:
Enabling VirtIO Driver Support on FPGAs. H2RC@SC 2022: 1-8 - [c102]Po-Hao Chen, Pouya Haghi, Jae Yoon Chung, Tong Geng, Richard West, Anthony Skjellum, Martin C. Herbordt:
The Viability of Using Online Prediction to Perform Extra Work while Executing BSP Applications. HPEC 2022: 1-7 - [c101]Rushi Patel, Pouya Haghi, Shweta Jain, Andriy Kot, Venkata Krishnan, Mayank Varia, Martin C. Herbordt:
Distributed Hardware Accelerated Secure Joint Computation on the COPA Framework. HPEC 2022: 1-7 - [c100]Hafsah Shahzad, Ahmed Sanaullah, Sanjay Arora, Robert Munafo, Xiteng Yao, Ulrich Drepper, Martin C. Herbordt:
Reinforcement Learning Strategies for Compiler Optimization in High level Synthesis. LLVM-HPC@SC 2022: 13-22 - 2021
- [c99]Michael Zink, David E. Irwin, Emmanuel Cecchet, Hakan Saplakoglu, Orran Krieger, Martin C. Herbordt, Michael Daitzman, Peter Desnoyers, Miriam Leeser, Suranga Handagala:
The Open Cloud Testbed (OCT): A Platform for Research into new Cloud Technologies. CloudNet 2021: 140-147 - [c98]Chunshu Wu, Tong Geng, Sahan Bandara, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Upgrade of FPGA Range-Limited Molecular Dynamics to Handle Hundreds of Processors. FCCM 2021: 142-151 - [c97]Lawrence C. Stewart, Carlo Pascoe, Emery Davis, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva:
Particle Mesh Ewald for Molecular Dynamics in OpenCL on an FPGA Cluster. FCCM 2021: 270 - [c96]Tong Geng, Chunshu Wu, Cheng Tan, Chenhao Xie, Anqi Guo, Pouya Haghi, Sarah Yuan He, Jiajia Li, Martin C. Herbordt, Ang Li:
A Survey: Handling Irregularities in Neural Network Acceleration with FPGAs. HPEC 2021: 1-8 - [c95]Pouya Haghi, Anqi Guo, Tong Geng, Anthony Skjellum, Martin C. Herbordt:
Workload Imbalance in HPC Applications: Effect on Performance of In-Network Processing. HPEC 2021: 1-8 - [c94]Hafsah Shahzad, Ahmed Sanaullah, Martin C. Herbordt:
Survey and Future Trends for FPGA Cloud Architectures. HPEC 2021: 1-10 - [c93]Chunshu Wu, Sahan Bandara, Tong Geng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
System-Level Modeling of GPU/FPGA Clusters for Molecular Dynamics Simulations. HPEC 2021: 1-8 - [c92]Tong Geng, Chunshu Wu, Yongan Zhang, Cheng Tan, Chenhao Xie, Haoran You, Martin C. Herbordt, Yingyan Lin, Ang Li:
I-GCN: A Graph Convolutional Network Accelerator with Runtime Locality Enhancement through Islandization. MICRO 2021: 1051-1063 - 2020
- [c91]Pouya Haghi, Tong Geng, Anqi Guo, Tianqi Wang, Martin C. Herbordt:
FP-AMG: FPGA-Based Acceleration Framework for Algebraic Multigrid Solvers. FCCM 2020: 148-156 - [c90]Qingqing Xiong, Chen Yang, Pouya Haghi, Anthony Skjellum, Martin C. Herbordt:
Accelerating MPI Collectives with FPGAs in the Network and Novel Communicator Support. FCCM 2020: 215 - [c89]Pierre-Francois Wolfe, Rushi Patel, Robert Munafo, Mayank Varia, Martin C. Herbordt:
Secret Sharing MPC on FPGAs in the Datacenter. FPL 2020: 236-242 - [c88]Tong Geng, Chunshu Wu, Cheng Tan, Bo Fang, Ang Li, Martin C. Herbordt:
CQNN: a CGRA-based QNN Framework. HPEC 2020: 1-7 - [c87]Pouya Haghi, Anqi Guo, Qingqing Xiong, Rushi Patel, Chen Yang, Tong Geng, Justin T. Broaddus, Ryan J. Marshall, Anthony Skjellum, Martin C. Herbordt:
FPGAs in the Network and Novel Communicator Support Accelerate MPI Collectives. HPEC 2020: 1-10 - [c86]Carlo Pascoe, Lawrence C. Stewart, Brian W. Sherman, Vipin Sachdeva, Martin C. Herbordt:
Execution of Complete Molecular Dynamics Simulations on Multiple FPGAs. HPEC 2020: 1-2 - [c85]Rushi Patel, Pierre-Francois Wolfe, Robert Munafo, Mayank Varia, Martin C. Herbordt:
Arithmetic and Boolean Secret Sharing MPC on FPGAs in the Data Center. HPEC 2020: 1-8 - [c84]Chunshu Wu, Tong Geng, Chen Yang, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
A Communication-Efficient Multi-Chip Design for Range-Limited Molecular Dynamics. HPEC 2020: 1-8 - [c83]Pouya Haghi, Anqi Guo, Tong Geng, Justin T. Broaddus, Derek Schafer, Anthony Skjellum, Martin C. Herbordt:
A Reconfigurable Compute-in-the-Network FPGA Assistant for High-Level Collective Support with Distributed Matrix Multiply Case Study. FPT 2020: 159-164 - [c82]Runbin Shi, Peiyan Dong, Tong Geng, Yuhao Ding, Xiaolong Ma, Hayden Kwok-Hay So, Martin C. Herbordt, Ang Li, Yanzhi Wang:
CSB-RNN: a faster-than-realtime RNN acceleration framework with compressed structured blocks. ICS 2020: 24:1-24:12 - [c81]Tong Geng, Ang Li, Runbin Shi, Chunshu Wu, Tianqi Wang, Yanfei Li, Pouya Haghi, Antonino Tumeo, Shuai Che, Steven K. Reinhardt, Martin C. Herbordt:
AWB-GCN: A Graph Convolutional Network Accelerator with Runtime Workload Rebalancing. MICRO 2020: 922-936 - 2019
- [c80]Tong Geng, Tianqi Wang, Chunshu Wu, Chen Yang, Shuaiwen Leon Song, Ang Li, Martin C. Herbordt:
LP-BNN: Ultra-low-Latency BNN Inference with Layer Parallelism. ASAP 2019: 9-16 - [c79]Tianqi Wang, Tong Geng, Xi Jin, Martin C. Herbordt:
Accelerating AP3M-Based Computational Astrophysics Simulations with Reconfigurable Clusters. ASAP 2019: 181-184 - [c78]Chen Yang, Tong Geng, Tianqi Wang, Charles Lin, Jiayi Sheng, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Molecular Dynamics Range-Limited Force Evaluation Optimized for FPGAs. ASAP 2019: 263-271 - [c77]Tianqi Wang, Tong Geng, Xi Jin, Martin C. Herbordt:
FP-AMR: A Reconfigurable Fabric Framework for Adaptive Mesh Refinement Applications. FCCM 2019: 245-253 - [c76]Qingqing Xiong, Rushi Patel, Chen Yang, Tong Geng, Anthony Skjellum, Martin C. Herbordt:
GhostSZ: A Transparent FPGA-Accelerated Lossy Compression Framework. FCCM 2019: 258-266 - [c75]Tong Geng, Tianqi Wang, Chunshu Wu, Chen Yang, Wei Wu, Ang Li, Martin C. Herbordt:
O3BNN: an out-of-order architecture for high-performance binarized neural network inference with fine-grained pruning. ICS 2019: 461-472 - [c74]Ang Li, Tong Geng, Tianqi Wang, Martin C. Herbordt, Shuaiwen Leon Song, Kevin J. Barker:
BSTC: a novel binarized-soft-tensor-core design for accelerating bit-based approximated neural nets. SC 2019: 38:1-38:30 - [c73]Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Chunshu Wu, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Fully integrated FPGA molecular dynamics simulations. SC 2019: 67:1-67:31 - 2018
- [c72]Tong Geng, Tianqi Wang, Ahmed Sanaullah, Chen Yang, Rui Xu, Rushi Patel, Martin C. Herbordt:
FPDeep: Acceleration and Load Balancing of CNN Training on FPGA Clusters. FCCM 2018: 81-84 - [c71]Jiayi Sheng, Chen Yang, Tianqi Wang, Martin C. Herbordt:
High Performance Dynamic Communication on Reconfigurable Clusters. FCCM 2018: 219 - [c70]Qingqing Xiong, Anthony Skjellum, Martin C. Herbordt:
Accelerating MPI Message Matching through FPGA Offload. FPL 2018: 191-195 - [c69]Jiayi Sheng, Chen Yang, Martin C. Herbordt:
High Performance Communication on Reconfigurable Clusters. FPL 2018: 219-223 - [c68]Tong Geng, Tianqi Wang, Ahmed Sanaullah, Chen Yang, Rushi Patel, Martin C. Herbordt:
A Framework for Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters with Work and Weight Load Balancing. FPL 2018: 394-398 - [c67]Ahmed Sanaullah, Rushi Patel, Martin C. Herbordt:
An Empirically Guided Optimization Framework for FPGA OpenCL. FPT 2018: 46-53 - [c66]Ahmed Sanaullah, Martin C. Herbordt:
FPGA HPC using OpenCL: Case Study in 3D FFT. HEART 2018: 7:1-7:6 - [c65]Tong Geng, Erkan Diken, Tianqi Wang, Lech Józwiak, Martin C. Herbordt:
An Access-Pattern-Aware On-Chip Vector Memory System with Automatic Loading for SIMD Architectures. HPEC 2018: 1-7 - [c64]Peter Jamieson, Ahmed Sanaullah, Martin C. Herbordt:
Benchmarking Heterogeneous HPC Systems Including Reconfigurable Fabrics: Community Aspirations for Ideal Comparisons. HPEC 2018: 1-6 - [c63]Ahmed Sanaullah, Martin C. Herbordt:
Unlocking Performance-Programmability by Penetrating the Intel FPGA OpenCL Toolflow. HPEC 2018: 1-8 - [c62]Ahmed Sanaullah, Chen Yang, Yuri Alexeev, Kazutomo Yoshii, Martin C. Herbordt:
Application Aware Tuning of Reconfigurable Multi-Layer Perceptron Architectures. HPEC 2018: 1-9 - [c61]Zikun Xiang, Tianqi Wang, Tong Geng, Tian Xiang, Xi Jin, Martin C. Herbordt:
Soft-Core. Multiple-Lane, FPGA-based ADCs for a Liquid Helium Environment. HPEC 2018: 1-6 - [c60]Qingqing Xiong, Emre Ates, Martin C. Herbordt, Ayse K. Coskun:
Tangram: Colocating HPC Applications with Oversubscription. HPEC 2018: 1-7 - [c59]Qingqing Xiong, Purushotham V. Bangalore, Anthony Skjellum, Martin C. Herbordt:
MPI Derived Datatypes: Performance and Portability Issues. EuroMPI 2018: 15:1-15:10 - 2017
- [c58]Qingqing Xiong, Martin C. Herbordt:
Bonded Force Computations on FPGAs. FCCM 2017: 72-75 - [c57]Jiayi Sheng, Chen Yang, Ahmed Sanaullah, Michael Papamichael, Adrian M. Caulfield, Martin C. Herbordt:
HPC on FPGA clouds: 3D FFTs and implications for molecular dynamics. FPL 2017: 1-4 - [c56]Chen Yang, Jiayi Sheng, Rushi Patel, Ahmed Sanaullah, Vipin Sachdeva, Martin C. Herbordt:
OpenCL for HPC with FPGAs: Case study in molecular electrostatics. HPEC 2017: 1-8 - [c55]Chen Yang, Jiayi Sheng, Aravind Sridhar, Martin C. Herbordt, Catherine Nicoloff, James B. R. Battat:
An FPGA-based data acquisition system for directional dark matter detection. HPEC 2017: 1-8 - 2016
- [c54]Ahmed Sanaullah, Arash Khoshparvar, Martin C. Herbordt:
FPGA-Accelerated Particle-Grid Mapping. FCCM 2016: 192-195 - [c53]Jiayi Sheng, Qingqing Xiong, Chen Yang, Martin C. Herbordt:
Application-Aware Collective Communication (Extended Abstract). FCCM 2016: 197 - [c52]Alan D. George, Martin C. Herbordt, Herman Lam, Abhijeet G. Lawande, Jiayi Sheng, Chen Yang:
Novo-G#: Large-scale reconfigurable computing with direct and programmable interconnects. HPEC 2016: 1-7 - [c51]Yinan Liu, Jiayi Sheng, Martin C. Herbordt:
A hardware design for in-brain neural spike sorting. HPEC 2016: 1-6 - [c50]Ahmed Sanaullah, Saiful A. Mojumder, Kathleen M. Lewis, Martin C. Herbordt:
GPU-accelerated charge mapping. HPEC 2016: 1-7 - 2015
- [c49]Jiayi Sheng, Chen Yang, Martin C. Herbordt:
Hardware-efficient compressed sensing encoder designs for WBSNs. HPEC 2015: 1-7 - 2014
- [c48]Benjamin Humphries, Hansen Zhang, Jiayi Sheng, Raphael Landaverde, Martin C. Herbordt:
3D FFTs on a Single FPGA. FCCM 2014: 68-71 - [c47]Raphael Landaverde, Martin C. Herbordt:
GPU optimizations for a production molecular docking code. HPEC 2014: 1-6 - [c46]Raphael Landaverde, Tiansheng Zhang, Ayse K. Coskun, Martin C. Herbordt:
An investigation of Unified Memory Access performance in CUDA. HPEC 2014: 1-6 - [c45]Jiayi Sheng, Ben Humphries, Hansen Zhang, Martin C. Herbordt:
Design of 3D FFTs with FPGA clusters. HPEC 2014: 1-6 - 2013
- [c44]Martin C. Herbordt:
Architecture/algorithm codesign of molecular dynamics processors. ACSSC 2013: 1442-1446 - [c43]Ben Humphries, Martin C. Herbordt:
3D FFT for FPGAs. HPEC 2013: 1-2 - 2012
- [c42]Atabak Mahram, Martin C. Herbordt:
FMSA: FPGA-Accelerated ClustalW-Based Multiple Sequence Alignment through Pipelined Prefiltering. FCCM 2012: 177-183 - [c41]Atabak Mahram, Martin C. Herbordt:
CAAD BLASTP 2.0: NCBI BLASTP accelerated with pipelined filters. FPL 2012: 217-223 - 2011
- [c40]Matt Chiu, Md. Ashfaquzzaman Khan, Martin C. Herbordt:
Efficient Calculation of Pairwise Nonbonded Forces. FCCM 2011: 73-76 - [c39]Md. Ashfaquzzaman Khan, Can Hankendi, Ayse Kivilcim Coskun, Martin C. Herbordt:
Software optimization for performance, energy, and thermal distribution: Initial case studies. IGCC 2011: 1-6 - 2010
- [c38]Atabak Mahram, Martin C. Herbordt:
Fast and accurate NCBI BLASTP: acceleration with multiphase FPGA-based prefiltering. ICS 2010: 73-82 - [c37]Bharat Sukhwani, Martin C. Herbordt:
Fast binding site mapping using GPUs and CUDA. IPDPS Workshops 2010: 1-8 - [c36]Jin H. Park, Yunfei Qiu, Martin C. Herbordt:
CAAD BLASTn: Accelerated NCBI BLASTn with FPGA prefiltering. ISCAS 2010: 3797-3800 - [c35]Matt Chiu, Martin C. Herbordt:
Towards production FPGA-accelerated molecular dynamics: Progress and challenges. HPRCTA@SC 2010: 1-8 - 2009
- [c34]Martin C. Herbordt, Md. Ashfaquzzaman Khan, Tony Dean:
Parallel Discrete Event Simulation of Molecular Dynamics Through Event-Based Decomposition. ASAP 2009: 129-136 - [c33]Bharat Sukhwani, Martin C. Herbordt:
GPU acceleration of a production molecular docking code. GPGPU 2009: 19-27 - [c32]Jin H. Park, Yunfei Qiu, Martin C. Herbordt:
CAAD BLASTP: NCBI BLASTP Accelerated with FPGA-Based Accelerated Pre-Filtering. FCCM 2009: 81-87 - [c31]Matt Chiu, Martin C. Herbordt:
Efficient particle-pair filtering for acceleration of molecular dynamics simulation. FPL 2009: 345-352 - [c30]Bharat Sukhwani, Martin C. Herbordt:
FPGA-based acceleration of CHARMM-potential minimization. HPRCTA@SC 2009: 1-10 - 2008
- [c29]Martin C. Herbordt, Francois Kosie, Josh Model:
An Efficient O(1) Priority Queue for Large FPGA-Based Discrete Event Simulations of Molecular Dynamics. FCCM 2008: 248-257 - [c28]Bharat Sukhwani, Martin C. Herbordt:
Acceleration of a production rigid molecule docking code. FPL 2008: 341-346 - [c27]Matt Chiu, Martin C. Herbordt, Martin Langhammer:
Performance potential of molecular dynamics simulations on high performance reconfigurable computing systems. HPRCTA@SC 2008: 1-10 - 2007
- [c26]Yongfeng Gu, Martin C. Herbordt:
FPGA-Based Multigrid Computation for Molecular Dynamics Simulations. FCCM 2007: 117-126 - [c25]Josh Model, Martin C. Herbordt:
Discrete Event Simulation of Molecular Dynamics with Configurable Logic. FPL 2007: 151-158 - 2006
- [c24]Martin C. Herbordt, Josh Model, Yongfeng Gu, Bharat Sukhwani, Tom Van Court:
Single Pass, BLAST-Like, Approximate String Matching on FPGAs. FCCM 2006: 217-226 - [c23]Tom Van Court, Martin C. Herbordt:
Application-Specific Memory Interleaving Enables High Performance in FPGA-based Grid Computations. FCCM 2006: 305-306 - [c22]Yongfeng Gu, Tom Van Court, Martin C. Herbordt:
Integrating FPGA Acceleration into the Protomol Molecular Dynamics Code: Preliminary Report. FCCM 2006: 315-316 - [c21]Tom Van Court, Martin C. Herbordt:
Application-Specific Memory Interleaving for FPGA-Based Grid Computations: A General Design Technique. FPL 2006: 1-7 - [c20]Tom Van Court, Martin C. Herbordt:
Sizing of Processing Arrays for FPGA-Based Computation. FPL 2006: 1-6 - [c19]Yongfeng Gu, Tom Van Court, Martin C. Herbordt:
Improved Interpolation and System Integration for FPGA-Based Molecular Dynamics Simulations. FPL 2006: 1-8 - 2005
- [c18]Tom Van Court, Yongfeng Gu, Martin C. Herbordt:
Three-Dimensional Template Correlation: Object Recognition in 3D Voxel Data. CAMP 2005: 153-158 - [c17]Yongfeng Gu, Tom Van Court, Douglas DiSabello, Martin C. Herbordt:
Preliminary Report: FPGA Acceleration of Molecular Dynamics Computations. FCCM 2005: 269-270 - [c16]Yongfeng Gu, Tom Van Court, Martin C. Herbordt:
Accelerating Molecular Dynamics Simulations With Configurable Circuits. FPL 2005: 475-480 - [c15]Tom Van Court, Martin C. Herbordt:
LAMP: A Tool Suite for Families of FPGA-Based Application Accelerators. FPL 2005: 612-617 - 2004
- [c14]Tom Van Court, Martin C. Herbordt:
Families of FPGA-Based Algorithms for Approximate String Matching. ASAP 2004: 354-364 - [c13]Tom Van Court, Yongfeng Gu, Martin C. Herbordt:
FPGA Acceleration of Rigid Molecule Interactions. FCCM 2004: 300-301 - [c12]Tom Van Court, Yongfeng Gu, Martin C. Herbordt:
FPGA Acceleration of Rigid Molecule Interactions. FPL 2004: 862-867 - [c11]Albert A. Conti, Tom Van Court, Martin C. Herbordt:
Processing Repetitive Sequence Structures with Mismatches at Streaming Rate. FPL 2004: 1080-1083 - 2003
- [c10]Tom Van Court, Martin C. Herbordt, Richard J. Barton:
Case Study of a Functional Genomics Application. FPL 2003: 365-374 - 2000
- [c9]Martin C. Herbordt, Honghai Zhang, Calvin Lin, Hong Rao, Jade Cravy:
Control for High-Speed PE Arrays. ASAP 2000: 247-257 - [c8]Martin C. Herbordt, Jade Cravy, Honghai Zhang, Calvin Lin, Hong Rao:
An Array Control Unit for High Performance SIMD Arrays. CAMP 2000: 293-301 - 1997
- [c7]Martin C. Herbordt, Owais Kidwai, Charles C. Weems:
Preprototyping SIMD Coprocessors Using Virtual Machine Emulation and Trace Compilation. SIGMETRICS 1997: 88-99 - 1995
- [c6]Martin C. Herbordt, Charles C. Weems:
An empirical study of datapath, memory hierarchy, and network in SIMD array architectures. ICCD 1995: 546-551 - [c5]Martin C. Herbordt, Charles C. Weems:
Experimental Analysis of Some SIMD Array Memory Hierarchies. ICPP (1) 1995: 210-214 - 1991
- [c4]Martin C. Herbordt, Charles C. Weems, Michael J. Scudder:
A computational framework and SIMD algorithms for low-level support of intermediate level vision processing. CVPR 1991: 740-741 - [c3]Martin C. Herbordt, Charles C. Weems:
Multi-associativity: A Framework for Solving Multiple Non-uniform Problem Instances Simultaneously on SIMD Arrays. ICPP (3) 1991: 219-223 - 1990
- [c2]Martin C. Herbordt, Charles C. Weems, David B. Shu:
Routing on the CAAPP. ICPR (2) 1990: 467-471 - [c1]Martin C. Herbordt, Charles C. Weems, James C. Corbett:
Message-Passing Algorithms for a SIMD Torus with Coteries. SPAA 1990: 11-20
Parts in Books or Collections
- 2014
- [p1]Bharat Sukhwani, Martin C. Herbordt:
Increasing Parallelism and Reducing Thread Contentions in Mapping Localized N-Body Simulations to GPUs. Numerical Computations with GPUs 2014: 379-405
Informal and Other Publications
- 2023
- [i10]Pouya Haghi, Ryan J. Marshall, Po-Hao Chen, Anthony Skjellum, Martin C. Herbordt:
A Survey of Potential MPI Complex Collectives: Large-Scale Mining and Analysis of HPC Applications. CoRR abs/2305.19946 (2023) - 2022
- [i9]Tong Geng, Chunshu Wu, Yongan Zhang, Cheng Tan, Chenhao Xie, Haoran You, Martin C. Herbordt, Yingyan Lin, Ang Li:
I-GCN: A Graph Convolutional Network Accelerator with Runtime Locality Enhancement through Islandization. CoRR abs/2203.03606 (2022) - [i8]Rushi Patel, Pouya Haghi, Shweta Jain, Andriy Kot, Venkata Krishnan, Mayank Varia, Martin C. Herbordt:
Distributed Hardware Accelerated Secure Joint Computation on the COPA Framework. CoRR abs/2204.04816 (2022) - [i7]Chengming Zhang, Tong Geng, Anqi Guo, Jiannan Tian, Martin C. Herbordt, Ang Li, Dingwen Tao:
H-GCN: A Graph Convolutional Network Accelerator on Versal ACAP Architecture. CoRR abs/2206.13734 (2022) - 2020
- [i6]Runbin Shi, Peiyan Dong, Tong Geng, Yuhao Ding, Xiaolong Ma, Hayden Kwok-Hay So, Martin C. Herbordt, Ang Li, Yanzhi Wang:
CSB-RNN: A Faster-than-Realtime RNN Acceleration Framework with Compressed Structured Blocks. CoRR abs/2005.05758 (2020) - [i5]Pierre-Francois Wolfe, Rushi Patel, Robert Munafo, Mayank Varia, Martin C. Herbordt:
Secret Sharing MPC on FPGAs in the Datacenter. CoRR abs/2007.00826 (2020) - [i4]Lawrence C. Stewart, Carlo Pascoe, Brian W. Sherman, Martin C. Herbordt, Vipin Sachdeva:
An OpenCL 3D FFT for Molecular Dynamics Simulations on Multiple FPGAs. CoRR abs/2009.12617 (2020) - 2019
- [i3]Tong Geng, Tianqi Wang, Ang Li, Xi Jin, Martin C. Herbordt:
A Scalable Framework for Acceleration of CNN Training on Deeply-Pipelined FPGA Clusters with Weight and Workload Balancing. CoRR abs/1901.01007 (2019) - [i2]Chen Yang, Tong Geng, Tianqi Wang, Rushi Patel, Qingqing Xiong, Ahmed Sanaullah, Jiayi Sheng, Charles Lin, Vipin Sachdeva, Woody Sherman, Martin C. Herbordt:
Fully Integrated On-FPGA Molecular Dynamics Simulations. CoRR abs/1905.05359 (2019) - [i1]Tong Geng, Ang Li, Tianqi Wang, Chunshu Wu, Yanfei Li, Antonino Tumeo, Martin C. Herbordt:
UWB-GCN: Hardware Acceleration of Graph-Convolution-Network through Runtime Workload Rebalancing. CoRR abs/1908.10834 (2019)
Coauthor Index
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