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ORCIDLudek Matyska
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- affiliation: Masaryk University
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Journal Articles
- 2020
[j12]Jiri Filipovic
, Ondrej Vávra, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Ludek Matyska, Jirí Damborský:
CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE ACM Trans. Comput. Biol. Bioinform. 17(5): 1625-1638 (2020)- 2019
- [j11]Ondrej Vavra, Jiri Filipovic, Jan Plhak, David Bednar, Sérgio M. Marques, Jan Brezovsky, Jan Stourac, Ludek Matyska, Jirí Damborský:
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinform. 35(23): 4986-4993 (2019) - 2018
- [j10]Davide Salomoni, Isabel Campos Plasencia, Luciano Gaido, Jesús E. Marco de Lucas, P. Solagna, Jorge Gomes, Ludek Matyska, P. Fuhrman, Marcus Hardt, Giacinto Donvito, Lukasz Dutka, Marcin Plóciennik, Roberto Barbera, Ignacio Blanquer, Andrea Ceccanti, Eva Cetinic, Mário David, Doina Cristina Duma, Álvaro López García, Germán Moltó, Pablo Orviz Fernández, Zdenek Sustr, Matthew Viljoen, Fernando Aguilar, Luís Alves, Marica Antonacci, Lucio Angelo Antonelli, Stefano Bagnasco, A. Bonving, Riccardo Bruno, Y. Chen, Alessandro Costa, Davor Davidovic, Benjamin Ertl, Marco Fargetta, Sandro Fiore, S. Gallozzi, Z. Kurkcuoglu, Lara Lloret Iglesias, J. Martins, Alessandra Nuzzo, Paola Nassisi, Cosimo Palazzo, João Murta Pina, Eva Sciacca, Daniele Spiga, Marco Antonio Tangaro, Michal Urbaniak, Sara Vallero, Bas Wegh, Valentina Zaccolo, Federico Zambelli, Tomasz Zok:
INDIGO-DataCloud: a Platform to Facilitate Seamless Access to E-Infrastructures. J. Grid Comput. 16(3): 381-408 (2018) - 2015
- [j9]Jiri Filipovic, Matus Madzin, Jan Fousek, Ludek Matyska:
Optimizing CUDA code by kernel fusion: application on BLAS. J. Supercomput. 71(10): 3934-3957 (2015) - 2010
- [j8]Igor Peterlík, Mert Sedef, Cagatay Basdogan, Ludek Matyska:
Real-time visio-haptic interaction with static soft tissue models having geometric and material nonlinearity. Comput. Graph. 34(1): 43-54 (2010) - 2008
- [j7]Ales Krenek, Jirí Sitera, Ludek Matyska, Frantisek Dvorák, Milos Mulac, Miroslav Ruda, Zdenek Salvet:
gLite Job Provenance - a job-centric view. Concurr. Comput. Pract. Exp. 20(5): 453-462 (2008) - 2007
- [j6]Lukás Hejtmánek, Ludek Matyska:
Nonblocking Distributed Replication of Versioned Files. J. Softw. 2(5): 16-23 (2007) - 2006
- [j5]Petr Holub, Ludek Matyska, Milos Liska, Lukás Hejtmánek, Jirí Denemark, Tomás Rebok, Andrei Hutanu, Ravi Paruchuri, Jan Radil, Eva Hladká:
High-definition multimedia for multiparty low-latency interactive communication. Future Gener. Comput. Syst. 22(8): 856-861 (2006) - [j4]Andrei Hutanu, Gabrielle Allen, Stephen David Beck, Petr Holub, Hartmut Kaiser, Archit Kulshrestha, Milos Liska, Jon MacLaren, Ludek Matyska, Ravi Paruchuri, Steffen Prohaska, Edward Seidel, Brygg Ullmer, Shalini Venkataraman:
Distributed and collaborative visualization of large data sets using high-speed networks. Future Gener. Comput. Syst. 22(8): 1004-1010 (2006) - 2004
- [j3]Giuseppe Avellino, Stefano Beco, Barbara Cantalupo, Alessandro Maraschini, Fabrizio Pacini, Massimo Sottilaro, Annalisa Terracina, D. Colling, Francesco Giacomini, Elisabetta Ronchieri, Alessio Gianelle, Mirco Mazzucato, Rosario Peluso, Massimo Sgaravatto, Andrea Guarise, Rosario M. Piro, Albert Werbrouck, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jirí Pospísil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, J. Skrabal, Michal Vocu, M. Mezzadri, Francesco Prelz, Salvatore Monforte, Marco Pappalardo:
The DataGrid Workload Management System: Challenges and Results. J. Grid Comput. 2(4): 353-367 (2004) - 1994
- [j2]Ludek Matyska, Jaroslav Koca:
D-CICADA : A Software for Confromational PES Elucidation on Network of Workstations. J. Comput. Chem. 15(9): 937-946 (1994) - 1991
- [j1]Ludek Matyska, Jaroslav Koca:
MAPOS: a computer program for organic synthesis design based on synthon model of organic chemistry. J. Chem. Inf. Comput. Sci. 31(3): 380-386 (1991)
Conference and Workshop Papers
- 2015
- [c27]Ludek Matyska:
The Czech e-Infrastructure and the European Grid Infrastructure Perspective. ISESS 2015: 561-568 - 2014
- [c26]David Svoboda, Vladimír Ulman, Ludek Matyska, Martin Maska, Jan Bella, Stanislav Stejskal:
On proper simulation of phenomena influencing image formation in fluorescence microscopy. ICIP 2014: 3944-3948 - 2010
- [c25]Michal Procházka, Daniel Kouril, Ludek Matyska:
User centric authentication for web applications. CTS 2010: 67-74 - 2009
- [c24]David Antos, Ludek Matyska, Petr Holub, Jirí Sitera:
VirtCloud: Virtualising Network for Grid Environments. AINA 2009: 876-883 - [c23]Jiri Filipovic, Igor Peterlík, Ludek Matyska:
On-line precomputation algorithm for real-time haptic interaction with non-linear deformable bodies. WHC 2009: 24-29 - 2008
- [c22]Igor Peterlík, Ludek Matyska:
Haptic Interaction with Soft Tissues Based on State-Space Approximation. EuroHaptics 2008: 886-895 - [c21]Ales Krenek, Ludek Matyska, Jirí Sitera, Miroslav Ruda, Frantisek Dvorák, Jiri Filipovic, Zdenek Sustr, Zdenek Salvet:
Job Provenance - Insight into Very Large Provenance Datasets. IPAW 2008: 144-151 - [c20]Ales Krenek, Martin Petrek, Jan Kmunícek, Jiri Filipovic, Zdenek Sustr, Frantisek Dvorák, Jirí Sitera, Jiri Wiesner, Ludek Matyska:
Multiple Ligand Trajectory Docking Study - Semiautomatic Analysis of Molecular Dynamics Simulations using EGEE gLite Services. PDP 2008: 447-454 - [c19]Milan Ceska, Zdenek Kotásek, Mojmír Kretínský, Ludek Matyska, Tomás Vojnar:
Preface. MEMICS 2008: 1-3 - 2007
- [c18]Daniel Kouril, Ludek Matyska, Michal Procházka:
A Robust and Efficient Mechanism to Distribute Certificate Revocation Information Using the Grid Monitoring Architecture. AINA Workshops (1) 2007: 614-619 - [c17]Eva Hladká, Daniel Kouril, Michal Procházka, Ludek Matyska, Petr Holub:
Transparent security for collaborative environments. CollaborateCom 2007: 79-84 - [c16]Igor Peterlík, Ludek Matyska:
An Algorithm of State-Space Precomputation Allowing Non-linear Haptic Deformation Modelling Using Finite Element Method. WHC 2007: 231-236 - [c15]Dalibor Klusácek, Ludek Matyska, Hana Rudová:
Alea - Grid Scheduling Simulation Environment. PPAM 2007: 1029-1038 - [c14]Miroslav Ruda, Jirí Denemark, Ludek Matyska:
Scheduling virtual grids: the Magrathea system. VTDC@SC 2007: 7:1-7:7 - 2006
- [c13]Michal Jankowski, Pawel Wolniewicz, Jirí Denemark, Norbert Meyer, Ludek Matyska:
Virtual Environments - Framework for Virtualized Resource Access in the Grid. Euro-Par Workshops 2006: 101-111 - [c12]Daniel Kouril, Ludek Matyska, Michal Procházka:
Improving Security in Grids Using the Smart Card Technology. GRID 2006: 303-304 - [c11]Frantisek Dvorák, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jan Pospisil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, Michal Vocu:
gLite Job Provenance. IPAW 2006: 246-253 - 2005
- [c10]Petr Holub, Eva Hladká, Ludek Matyska:
Scalability and Robustness of Virtual Multicast for Synchronous Multimedia Distribution. ICN (2) 2005: 876-883 - [c9]Jirí Denemark, Michal Jankowski, Ales Krenek, Ludek Matyska, Norbert Meyer, Miroslav Ruda, Pawel Wolniewicz:
Best Practices of User Account Management with Virtual Organization Based Access to Grid. PPAM 2005: 633-642 - 2004
- [c8]Petr Holub, Martin Kuba, Ludek Matyska, Miroslav Ruda:
Grid Infrastructure Monitoring as Reliable Information Service. European Across Grids Conference 2004: 220-229 - 2003
- [c7]Ales Krenek, Igor Peterlík, Ludek Matyska:
Building 3D State Spaces of Virtual Environments with a TDS-Based Algorithm. PVM/MPI 2003: 529-536 - 2001
- [c6]Gabrielle Allen, Thomas Dramlitsch, Tom Goodale, Gerd Lanfermann, Thomas Radke, Edward Seidel, Thilo Kielmann, Kees Verstoep, Zoltán Balaton, Péter Kacsuk, Ferenc Szalai, Jörn Gehring, Axel Keller, Achim Streit, Ludek Matyska, Miroslav Ruda, Ales Krenek, Harald Knipp, André Merzky, Alexander Reinefeld, Florian Schintke, Bogdan Ludwiczak, Jarek Nabrzyski, Juliusz Pukacki, Hans-Peter Kersken, Giovanni Aloisio, Massimo Cafaro, Wolfgang Ziegler, Michael Russell:
Early Experiences with the EGrid Testbed. CCGRID 2001: 130-139 - [c5]Ludek Matyska, Eva Hladká:
Mobile computing. EUNIS 2001: 349-358 - [c4]Eva Hladká, Ludek Matyska:
Active networks and high speed content delivery. EUNIS 2001: 448-456 - 1996
- [c3]Ludek Matyska:
High Performance Computing - The Computational Chemistry Perspective. SOFSEM 1996: 197-216 - 1995
- [c2]Ludek Matyska, Hynek Bures:
Constraint Logic Programming with Fuzzy Sets. SOFSEM 1995: 413-418 - 1991
- [c1]Ludek Matyska, Adriana Jergová, David Toman:
Register Allocation in WAM. ICLP 1991: 142-156
Editorship
- 2011
- [e2]Ludek Matyska, Michal Kozubek, Tomás Vojnar, Pavel Zemcík, David Antos:
Sixth Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, MEMICS 2010, Selected Papers, October 22-24, 2010, Mikulov, Czech Republic. OASIcs 16, Schloss Dagstuhl - Leibniz-Zentrum fuer Informatik, Germany 2011, ISBN 978-3-939897-22-4 [contents] - 2009
- [e1]Milan Ceska, Zdenek Kotásek, Mojmír Kretínský, Ludek Matyska, Tomás Vojnar:
Proceedings of the International Doctoral Workshop on Mathematical and Engineering Methods in Computer Science, MEMICS 2008, Znojmo, Czech Republic, November 14-16, 2008. Electronic Notes in Theoretical Computer Science 251, Elsevier 2009 [contents]
Informal and Other Publications
- 2024
- [i8]Matej Antol, Jiri Marek, Michaela Capandova, Jaroslav Juracek, Ludek Matyska:
EOSC CZ: Towards the development of Czech national ecosystem for FAIR research data. CoRR abs/2402.13343 (2024) - 2021
- [i7]Igor Peterlík, Mert Sedef, Cagatay Basdogan, Ludek Matyska:
Real-time visio-haptic interaction with static soft tissue model shaving geometric and material nonlinearity. CoRR abs/2104.04387 (2021) - 2018
- [i6]Mikael Linden, Michal Procházka, Ilkka Lappalainen, Dominik Bucik, Pavel Vyskocil, Martin Kuba, Sami Silén, Peter Belmann, Alexander Sczyrba, Steven J. Newhouse, Ludek Matyska, Tommi H. Nyrönen:
Common ELIXIR Service for Researcher Authentication and Authorisation. F1000Research 7: 1199 (2018) - 2017
- [i5]Davide Salomoni, Luciano Gaido, Isabel Campos Plasencia, Jesús E. Marco de Lucas, P. Solagna, Jorge Gomes, Ludek Matyska, P. Fuhrman, Marcus Hardt, Giacinto Donvito, Lukasz Dutka, Marcin Plóciennik, Roberto Barbera, Cristina Aiftimiei, Ignacio Blanquer, Andrea Ceccanti, Mário David, Álvaro López García, Germán Moltó, Pablo Orviz Fernández, Zdenek Sustr, Matthew Viljoen, Fernando Aguilar, Luís Alves, A. Bonving, Riccardo Bruno, Davor Davidovic, Marco Fargetta, Y. Chen, Sandro Fiore, Z. Kurkcuoglu, Lara Lloret Iglesias, J. Martins, Alessandra Nuzzo, Paola Nassisi, João Murta Pina, Eva Sciacca, Daniele Spiga, Marco Antonio Tangaro, Michal Urbaniak, Bas Wegh, Tomasz Zok:
INDIGO-DataCloud: A data and computing platform to facilitate seamless access to e-infrastructures. CoRR abs/1711.01981 (2017) - 2013
- [i4]Jiri Filipovic, Matus Madzin, Jan Fousek, Ludek Matyska:
Optimizing CUDA Code By Kernel Fusion---Application on BLAS. CoRR abs/1305.1183 (2013) - [i3]Jana Pazúriková, Ludek Matyska:
Parallel methods for calculation of long-range electrostatic interactions. CoRR abs/1309.1889 (2013) - 2003
- [i2]Giuseppe Avellino, Stefano Beco, Barbara Cantalupo, Fabrizio Pacini, Annalisa Terracina, Alessandro Maraschini, D. Colling, Salvatore Monforte, Marco Pappalardo, Livio Salconi, Francesco Giacomini, Elisabetta Ronchieri, Daniel Kouril, Ales Krenek, Ludek Matyska, Milos Mulac, Jirí Pospísil, Miroslav Ruda, Zdenek Salvet, Jirí Sitera, Michal Vocu, M. Mezzadri, Francesco Prelz, Alessio Gianelle, R. Peluso, Massimo Sgaravatto, S. Barale, Andrea Guarise, Albert Werbrouck:
The first deployment of workload management services on the EU DataGrid Testbed: feedback on design and implementation. CoRR cs.DC/0306007 (2003) - [i1]Giuseppe Avellino, S. Barale, Stefano Beco, Barbara Cantalupo, D. Colling, Francesco Giacomini, Alessio Gianelle, Andrea Guarise, Ales Krenek, Daniel Kouril, Alessandro Maraschini, Ludek Matyska, M. Mezzadri, Salvatore Monforte, Milos Mulac, Fabrizio Pacini, Marco Pappalardo, R. Peluso, Jirí Pospísil, Francesco Prelz, Elisabetta Ronchieri, Miroslav Ruda, Livio Salconi, Zdenek Salvet, Massimo Sgaravatto, Jirí Sitera, Annalisa Terracina, Michal Vocu, Albert Werbrouck:
The EU DataGrid Workload Management System: towards the second major release. CoRR cs.DC/0306072 (2003)
Coauthor Index
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