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ORCIDPhilip M. Papadopoulos
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- affiliation: University of California, San Diego, Supercomputer Center (SDSC)
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Journal Articles
- 2017
[j20]Kohei Ichikawa
, Pongsakorn U.-Chupala, Che Huang, Chawanat Nakasan, Te-Lung Liu, Jo-Yu Chang, Li-Chi Ku, Whey-Fone Tsai, Jason Haga, Hiroaki Yamanaka, Eiji Kawai, Yoshiyuki Kido, Susumu Date, Shinji Shimojo, Philip M. Papadopoulos, Maurício O. Tsugawa, Matthew Collins, Kyuho Jeong, Renato Figueiredo, José A. B. Fortes:
PRAGMA-ENT: An International SDN testbed for cyberinfrastructure in the Pacific Rim. Concurr. Comput. Pract. Exp. 29(13) (2017)- [j19]Shava Smallen, Nadya Williams, Philip M. Papadopoulos:
Lightweight scheduling for the PRAGMA cloud testbed. Concurr. Comput. Pract. Exp. 29(13) (2017) - [j18]Nadya Williams, Aimee Stewart, Philip M. Papadopoulos:
Virtualizing Lifemapper software infrastructure for biodiversity expedition. Concurr. Comput. Pract. Exp. 29(13) (2017) - 2012
- [j17]Sameer S. Tilak, Philip M. Papadopoulos:
The case for a rigorous approach to automating software operations and management of large-scale sensor networks. Comput. Commun. Rev. 42(5): 58-61 (2012) - 2011
- [j16]Philip M. Papadopoulos:
Extending clusters to Amazon EC2 using the Rocks toolkit. Int. J. High Perform. Comput. Appl. 25(3): 317-327 (2011) - 2009
- [j15]Morris Riedel, Erwin Laure, Thomas Soddemann, Laurence Field, John-Paul Navarro, James Casey, Maarten Litmaath, Jean-Philippe Baud, Birger Koblitz, Charlie Catlett, Dane Skow, Cindy Zheng, Philip M. Papadopoulos, Mason J. Katz, Neha Sharma, Oxana Smirnova, Balázs Kónya, Peter W. Arzberger, Frank Würthwein, Abhishek Singh Rana, Terrence Martin, M. Wan, Von Welch, Tony Rimovsky, Steven J. Newhouse, Andrea Vanni, Yoshio Tanaka, Yusuke Tanimura, Tsutomu Ikegami, David Abramson, Colin Enticott, Graham Jenkins, Ruth Pordes, Steven Timm, Gidon Moont, Mona Aggarwal, D. Colling, Olivier van der Aa, Alex Sim, Vijaya Natarajan, Arie Shoshani, Junmin Gu, S. Chen, Gerson Galang, Riccardo Zappi, Luca Magnoni, Vincenzo Ciaschini, Michele Pace, Valerio Venturi, Moreno Marzolla, Paolo Andreetto, Robert Cowles, Shaowen Wang, Yuji Saeki, Hitoshi Sato, Satoshi Matsuoka, Putchong Uthayopas, Somsak Sriprayoonsakul, Oscar Koeroo, Matthew Viljoen, Laura Pearlman, Stephen Pickles, David Wallom, Glenn Moloney, Jerome Lauret, Jim Marsteller, Paul Sheldon, Surya Pathak, Shaun De Witt, Jirí Mencák, Jens Jensen, Matt Hodges, Derek Ross, Sugree Phatanapherom, Gilbert Netzer, Anders Rhod Gregersen, Mike Jones, S. Chen, Péter Kacsuk, Achim Streit, Daniel Mallmann, Felix Wolf, Thomas Lippert, Thierry Delaitre, Eduardo Huedo, Neil Geddes:
Interoperation of world-wide production e-Science infrastructures. Concurr. Comput. Pract. Exp. 21(8): 961-990 (2009) - [j14]Thomas A. DeFanti, Jason Leigh, Luc Renambot, Byungil Jeong, Alan Verlo, Lance Long, Maxine D. Brown, Daniel J. Sandin, Venkatram Vishwanath, Qian Liu, Mason J. Katz, Philip M. Papadopoulos, Joseph P. Keefe, Gregory R. Hidley, Gregory Dawe, Ian Kaufman, Bryan Glogowski, Kai-Uwe Doerr, Rajvikram Singh, Javier Girado:
The OptIPortal, a scalable visualization, storage, and computing interface device for the OptiPuter. Future Gener. Comput. Syst. 25(2): 114-123 (2009) - [j13]Larry Smarr, Paul Gilna, Philip M. Papadopoulos, Thomas A. DeFanti, Gregory R. Hidley, John C. Wooley, E. Virginia Armbrust, Forest Rohwer, Eric G. Frost:
Building an OptIPlanet collaboratory to support microbial metagenomics. Future Gener. Comput. Syst. 25(2): 124-131 (2009) - 2008
- [j12]David B. Keator, Jeffrey S. Grethe, Daniel S. Marcus, I. Burak Özyurt, Syam Gadde, Shawn N. Murphy, Steve Pieper, Douglas N. Greve, R. Notestine, Henry Jeremy Bockholt, Philip M. Papadopoulos:
A National Human Neuroimaging Collaboratory Enabled by the Biomedical Informatics Research Network (BIRN). IEEE Trans. Inf. Technol. Biomed. 12(2): 162-172 (2008) - 2007
- [j11]Cindy Zheng, Mason J. Katz, Philip M. Papadopoulos, David Abramson, Shahaan Ayyub, Colin Enticott, Slavisa Garic, Wojtek Goscinski, Peter W. Arzberger, Bu-Sung Lee, Sugree Phatanapherom, Somsak Sriprayoonsakul, Putchong Uthayopas, Yoshio Tanaka, Yusuke Tanimura:
Lessons learned through driving science applications in the PRAGMA grid. Int. J. Web Grid Serv. 3(3): 287-312 (2007) - [j10]Philip M. Papadopoulos, Greg Bruno, Mason J. Katz:
Beyond Beowulf clusters. ACM Queue 5(3): 36-43 (2007) - 2006
- [j9]N. Taesombot, Frank C. Uyeda, Andrew A. Chien, Larry Smarr, Thomas A. DeFanti, Philip M. Papadopoulos, Jason Leigh, Mark H. Ellisman, John A. Orcutt:
The OptIPuter: high-performance, QoS-guaranteed network service for emerging E-science applications. IEEE Commun. Mag. 44(5): 38-45 (2006) - 2005
- [j8]Jerry P. Greenberg, Steve Mock, Karan Bhatia, Mason J. Katz, Greg Bruno, Federico D. Sacerdoti, Philip M. Papadopoulos, Kim K. Baldridge:
Incorporation of middleware and grid technologies to enhance usability in Computational Chemistry applications. Future Gener. Comput. Syst. 21(1): 3-10 (2005) - 2004
- [j7]Philip M. Papadopoulos, Caroline A. Papadopoulos, Mason J. Katz, William J. Link, Greg Bruno:
Configuring Large High-Performance Clusters at Lightspeed: A Case Study. Int. J. High Perform. Comput. Appl. 18(3): 317-326 (2004) - 2003
- [j6]Larry Smarr, Andrew A. Chien, Thomas A. DeFanti, Jason Leigh, Philip M. Papadopoulos:
The OptIPuter. Commun. ACM 46(11): 58-67 (2003) - [j5]Philip M. Papadopoulos, Mason J. Katz, Greg Bruno:
NPACI Rocks: tools and techniques for easily deploying manageable Linux clusters. Concurr. Comput. Pract. Exp. 15(7-8): 707-725 (2003) - 1999
- [j4]George Al Geist II, James Arthur Kohl, Stephen L. Scott, Philip M. Papadopoulos:
Harness: Adaptable Virtual Machine Environment for Heterogeneous Clusters. Parallel Process. Lett. 9(2): 253-273 (1999) - 1998
- [j3]Timothy J. Sheehan, William A. Shelton, Thomas J. Pratt, Philip M. Papadopoulos, Philip F. LoCascio, Thomas H. Dunigan:
The Locally Self-Consistent Multiple Scattering Code in a Geographically Distributed Linked MPP Environment. Parallel Comput. 24(12-13): 1827-1846 (1998) - 1997
- [j2]George Al Geist II, James Arthur Kohl, Philip M. Papadopoulos:
Cumulvs: Providing Fault Toler. Ance, Visualization, and Steer Ing of Parallel Applications. Int. J. High Perform. Comput. Appl. 11(3): 224-235 (1997) - 1996
- [j1]George Al Geist II, James Arthur Kohl, Donald M. C. Nicholson, Philip M. Papadopoulos, Bart D. Semeraro, William A. Shelton, G. Malcolm Stocks, Yang Wang:
Early Experiences With Distributed Supercomputing On I-Way: First Principles Materials Science and Parallel Acoustic Wave Propagation. Int. J. High Perform. Comput. Appl. 10(2-3): 157-169 (1996)
Conference and Workshop Papers
- 2018
- [c26]Larry Smarr, Camille Crittenden, Thomas A. DeFanti, John Graham, Dmitry Mishin, Richard Moore, Philip M. Papadopoulos, Frank Würthwein:
The Pacific Research Platform: Making High-Speed Networking a Reality for the Scientist. PEARC 2018: 29:1-29:8 - 2017
- [c25]Shawn Strande, Haisong Cai, Trevor Cooper, Karen Flammer, Christopher Irving, Gregor von Laszewski, Amitava Majumdar, Dmitry Mishin, Philip M. Papadopoulos, Wayne Pfeiffer, Robert S. Sinkovits, Mahidhar Tatineni, Rick Wagner, Fugang Wang, Nancy Wilkins-Diehr, Nicole Wolter, Michael L. Norman:
Comet: Tales from the Long Tail: Two Years In and 10, 000 Users Later. PEARC 2017: 38:1-38:7 - 2016
- [c24]Rick Wagner, Philip M. Papadopoulos, Dmitry Mishin, Trevor Cooper, Mahidhar Tatineni, Gregor von Laszewski, Fugang Wang, Geoffrey C. Fox:
User Managed Virtual Clusters in Comet. XSEDE 2016: 24:1-24:8 - 2014
- [c23]Luca Clementi, Philip M. Papadopoulos:
Fingerprinting application dependencies. CLUSTER 2014: 288-289 - [c22]Richard Lee Moore, Chaitan Baru, Diane Baxter, Geoffrey Charles Fox, Amitava Majumdar, Philip M. Papadopoulos, Wayne Pfeiffer, Robert S. Sinkovits, Shawn Strande, Mahidhar Tatineni, Richard P. Wagner, Nancy Wilkins-Diehr, Michael L. Norman:
Gateways to Discovery: Cyberinfrastructure for the Long Tail of Science. XSEDE 2014: 39:1-39:8 - 2012
- [c21]Yoshio Tanaka, Naotaka Yamamoto, Ryousei Takano, Akihiko Ota, Philip M. Papadopoulos, Nadya Williams, Cindy Zheng, Weicheng Huang, Yi-Lun Pan, Chang-Hsing Wu, Hsi-En Yu, J. H. Steven Shiao, Kohei Ichikawa, Taiki Tada, Susumu Date, Shinji Shimojo:
Building Secure and Transparent Inter-Cloud Infrastructure for Scientific Applications. High Performance Computing Workshop (1) 2012: 35-52 - 2009
- [c20]Sriram Krishnan, Luca Clementi, Jingyuan Ren, Philip M. Papadopoulos, Wilfred W. Li:
Design and Evaluation of Opal2: A Toolkit for Scientific Software as a Service. SERVICES I 2009: 709-716 - 2006
- [c19]Philip M. Papadopoulos:
Building Cyber-Infrastructure for the Biomedical Informatics Research Network. CCGRID 2006: 6 - [c18]Cindy Zheng, David Abramson, Peter W. Arzberger, Shahaan Ayyub, Colin Enticott, Slavisa Garic, Mason J. Katz, Jae-Hyuck Kwak, Bu-Sung Lee, Philip M. Papadopoulos, Sugree Phatanapherom, Somsak Sriprayoonsakul, Yoshio Tanaka, Yusuke Tanimura, Osamu Tatebe, Putchong Uthayopas:
The PRAGMA Testbed - Building a Multi-Application International Grid. CCGRID 2006: 57 - 2005
- [c17]Jeffrey S. Grethe, Chaitan Baru, Amarnath Gupta, Mark James, Bertram Ludäscher, Maryann E. Martone, Philip M. Papadopoulos, Steven Peltier, Arcot Rajasekar, Simone Santini, Ilya Zaslavsky, Mark H. Ellisman:
Biomedical Informatics Research Network: Building a National Collaboratory to Hasten the Derivation of New Understanding and Treatment of Disease. HealthGrid 2005: 100-109 - [c16]Bill Allcock, Bill St. Arnaud, Tal Lavian, Bill Johnston, Philip M. Papadopoulos, Masum Z. Hasan, Wes Kaplow:
Impact of Grid Computing on Network Operators and HW Vendors. Hot Interconnects 2005: 89-90 - [c15]Federico D. Sacerdoti, Mason J. Katz, Philip M. Papadopoulos:
411 on scalable password service. HPDC 2005: 211-221 - 2004
- [c14]Greg Bruno, Mason J. Katz, Federico D. Sacerdoti, Philip M. Papadopoulos:
Rolls: modifying a standard system installer to support user-customizable cluster frontend appliances. CLUSTER 2004: 421-430 - [c13]Jerry P. Greenberg, Steve Mock, Mason J. Katz, Greg Bruno, Federico D. Sacerdoti, Philip M. Papadopoulos, Kim K. Baldridge:
Incorporation of Middleware and Grid Technologies to Enhance Usability in Computational Chemistry Applications. International Conference on Computational Science 2004: 75-82 - 2003
- [c12]Greg Bruno, Mason J. Katz, Philip M. Papadopoulos, Federico D. Sacerdoti, L. Liew, N. Ninaba:
Building and Managing Clusters with NPACI Rocks. CLUSTER 2003 - 2002
- [c11]Mason J. Katz, Philip M. Papadopoulos, Greg Bruno:
Leveraging Standard Core Technologies to Programmatically Build Linux Cluster Appliances. CLUSTER 2002: 47-53 - [c10]Kim K. Baldridge, Jerry P. Greenberg, Stephen Elbert, Steve Mock, Philip M. Papadopoulos:
QMView and GAMESS: integration into the world wide computational grid. SC 2002: 61:1-61:25 - 2001
- [c9]Philip M. Papadopoulos, Mason J. Katz, Greg Bruno:
NPACI Rocks: Tools and Techniques for Easily Deploying Manageable Linux Clusters. CLUSTER 2001: 258- - [c8]Philip M. Papadopoulos, Mason J. Katz, Greg Bruno:
NPACI Rocks Clusters: Tools for Easily Deploying and Maintaining Manageable High-Performance Linux Clusters. PVM/MPI 2001: 10-11 - 1998
- [c7]Philip M. Papadopoulos, James Arthur Kohl, B. David Semeraro:
CUMULVS: Extending a Generic Steering and Visualization Middleware for Application Fault-Tolerance. HICSS (7) 1998: 127-136 - [c6]Jack J. Dongarra, Graham E. Fagg, Al Geist, James Arthur Kohl, Philip M. Papadopoulos, Stephen L. Scott, Vaidy S. Sunderam, M. Magliardi:
HARNESS: Heterogeneous Adaptable Reconfigurable NEtworked SystemS. HPDC 1998: 358-359 - [c5]Philip M. Papadopoulos, James Arthur Kohl:
Dynamic Visualization and Steering Using PVM and MPI. PVM/MPI 1998: 297-303 - [c4]James Arthur Kohl, Philip M. Papadopoulos:
Efficient and flexible fault tolerance and migration of scientific simulations using CUMULVS. SPDT 1998: 60-71 - 1997
- [c3]James Arthur Kohl, Philip M. Papadopoulos, George Al Geist II:
CUMULVS: Collaborative Infrastructure for Developing Distributed Simulations. PPSC 1997 - [c2]Philip M. Papadopoulos, George Al Geist II:
Wide-Area ATM Networking for Large-Scale MPPs. PPSC 1997 - [c1]Al Geist, James Arthur Kohl, Philip M. Papadopoulos, Stephen L. Scott:
Beyond PVM 3.4: What We've Learned, What's New, and Why. PVM/MPI 1997: 116-126
Informal and Other Publications
- 2015
- [i3]Nadya Williams, Aimee Stewart, Philip M. Papadopoulos:
Virtualizing Lifemapper Software Infrastructure for Biodiversity Expedition. CoRR abs/1509.06695 (2015) - [i2]Kohei Ichikawa, Maurício O. Tsugawa, Jason H. Haga, Hiroaki Yamanaka, Te-Lung Liu, Yoshiyuki Kido, Pongsakorn U.-Chupala, Che Huang, Chawanat Nakasan, Jo-Yu Chang, Li-Chi Ku, Whey-Fone Tsai, Susumu Date, Shinji Shimojo, Philip M. Papadopoulos, José A. B. Fortes:
PRAGMA-ENT: Exposing SDN Concepts to Domain Scientists in the Pacific Rim. CoRR abs/1509.08420 (2015) - 2014
- [i1]Fang-Pang Lin, Philip M. Papadopoulos, Satoshi Sekiguchi:
Water Disaster Management and Big Data (NII Shonan Meeting 2014-8). NII Shonan Meet. Rep. 2014 (2014)
Coauthor Index
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