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ORCIDMartin Vingron
Person information
- affiliation: Max Planck Institute for Molecular Genetics, Berlin, Germany
- award (2004): Max Planck Research Award
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Journal Articles
- 2023
[j101]Trisevgeni Rapakoulia
, Sara Lopez Ruiz De Vargas, Persia Akbari Omgba, Verena Laupert, Igor Ulitsky, Martin Vingron:
CENTRE: a gradient boosting algorithm for Cell-type-specific ENhancer-Target pREdiction. Bioinform. 39(11) (2023)- [j100]Christiana N. Fogg, Diane E. Kovats, Martin Vingron:
2023 Outstanding Contributions to ISCB Award: Shoba Ranganathan. Bioinform. 39(Supplement-1): 3-4 (2023) - [j99]Christiana N. Fogg, Diane E. Kovats, Martin Vingron:
2023 ISCB Overton Prize: Jingyi Jessica Li. Bioinform. 39(Supplement-1): 5-6 (2023) - [j98]Christiana N. Fogg, Diane E. Kovats, Martin Vingron:
2023 ISCB innovator award: Dana Pe'er. Bioinform. 39(Supplement-1): 7-8 (2023) - [j97]Christiana N. Fogg, Diane E. Kovats, Martin Vingron:
2023 ISCB accomplishments by a senior scientist award: Mark Gerstein. Bioinform. 39(Supplement-1): 9-10 (2023) - 2022
- [j96]Sorin Istrail, Pavel A. Pevzner, Fengzhu Sun, Martin Vingron:
Special Issue: Professor Michael Waterman's 80th Birthday, Part 1. J. Comput. Biol. 29(7): 599-600 (2022) - [j95]Pavel A. Pevzner, Martin Vingron, Christian M. Reidys, Fengzhu Sun, Sorin Istrail:
Michael Waterman's Contributions to Computational Biology and Bioinformatics. J. Comput. Biol. 29(7): 601-615 (2022) - [j94]Lam-Ha Ly, Martin Vingron:
Effect of imputation on gene network reconstruction from single-cell RNA-seq data. Patterns 3(2): 100414 (2022) - 2021
- [j93]David Heller, Martin Vingron:
SVIM-asm: structural variant detection from haploid and diploid genome assemblies. Bioinform. 36(22-23): 5519-5521 (2021) - [j92]Christiana N. Fogg, Diane E. Kovats, Martin Vingron:
ISCB Honors 2021 Award Recipients Peer Bork, Barbara Engelhardt, Ben Raphael, Teresa Attwood. Bioinform. 37(Supplement): 1-6 (2021) - 2020
- [j91]Philipp Benner, Martin Vingron:
ModHMM: A Modular Supra-Bayesian Genome Segmentation Method. J. Comput. Biol. 27(4): 442-457 (2020) - [j90]M-Hossein Moeinzadeh, Jun Yang, Evgeny Muzychenko, Giuseppe Gallone, David Heller, Knut Reinert, Stefan A. Haas, Martin Vingron:
Ranbow: A fast and accurate method for polyploid haplotype reconstruction. PLoS Comput. Biol. 16(5) (2020) - 2019
- [j89]Mahsa Ghanbari, Julia Lasserre, Martin Vingron:
The Distance Precision Matrix: computing networks from non-linear relationships. Bioinform. 35(6): 1009-1017 (2019) - [j88]David Heller, Martin Vingron:
SVIM: structural variant identification using mapped long reads. Bioinform. 35(17): 2907-2915 (2019) - [j87]Tobias Zehnder, Philipp Benner, Martin Vingron:
Predicting enhancers in mammalian genomes using supervised hidden Markov models. BMC Bioinform. 20(1): 157:1-157:12 (2019) - [j86]Wolfgang Kopp, Martin Vingron:
DNA Motif Match Statistics Without Poisson Approximation. J. Comput. Biol. 26(8): 846-865 (2019) - 2018
- [j85]Alena van Bömmel, Michael I. Love, Ho-Ryun Chung, Martin Vingron:
coTRaCTE predicts co-occurring transcription factors within cell-type specific enhancers. PLoS Comput. Biol. 14(8) (2018) - 2017
- [j84]Wolfgang Kopp, Martin Vingron:
An improved compound Poisson model for the number of motif hits in DNA sequences. Bioinform. 33(24): 3929-3937 (2017) - 2016
- [j83]Matthew R. Huska, Martin Vingron:
Improved Prediction of Non-methylated Islands in Vertebrates Highlights Different Characteristic Sequence Patterns. PLoS Comput. Biol. 12(12) (2016) - [j82]Sergiy Ancherbak, Ercan E. Kuruoglu, Martin Vingron:
Time-Dependent Gene Network Modelling by Sequential Monte Carlo. IEEE ACM Trans. Comput. Biol. Bioinform. 13(6): 1183-1193 (2016) - 2015
- [j81]Matthias Heinig, Maria Colomé-Tatché, Aaron Taudt, Carola Rintisch, Sebastian Schafer, Michal Pravenec, Norbert Hübner, Martin Vingron, Frank Johannes:
histoneHMM: Differential analysis of histone modifications with broad genomic footprints. BMC Bioinform. 16: 60:1-60:15 (2015) - [j80]Mahsa Ghanbari, Julia Lasserre, Martin Vingron:
Reconstruction of gene networks using prior knowledge. BMC Syst. Biol. 9: 84 (2015) - 2014
- [j79]Andreas W. M. Dress, Michal Linial, Olga G. Troyanskaya, Martin Vingron:
ISCB/SPRINGER series in computational biology. Bioinform. 30(1): 146-147 (2014) - [j78]Guofeng Meng, Martin Vingron:
Condition-specific target prediction from motifs and expression. Bioinform. 30(12): 1643-1650 (2014) - [j77]Navodit Misra, Ewa Szczurek, Martin Vingron:
Inferring the paths of somatic evolution in cancer. Bioinform. 30(17): 2456-2463 (2014) - 2013
- [j76]Alessandro Mammana, Martin Vingron, Ho-Ryun Chung:
Inferring nucleosome positions with their histone mark annotation from ChIP data. Bioinform. 29(20): 2547-2554 (2013) - [j75]Julia Lasserre, Ho-Ryun Chung, Martin Vingron:
Finding Associations among Histone Modifications Using Sparse Partial Correlation Networks. PLoS Comput. Biol. 9(9) (2013) - 2012
- [j74]Anne-Katrin Emde, Marcel H. Schulz, David Weese, Ruping Sun, Martin Vingron, Vera M. Kalscheuer, Stefan A. Haas, Knut Reinert:
Detecting genomic indel variants with exact breakpoints in single- and paired-end sequencing data using SplazerS. Bioinform. 28(5): 619-627 (2012) - [j73]Jonathan Göke, Marcel H. Schulz, Julia Lasserre, Martin Vingron:
Estimation of pairwise sequence similarity of mammalian enhancers with word neighbourhood counts. Bioinform. 28(5): 656-663 (2012) - [j72]Ruping Sun, Michael I. Love, Tomasz Zemojtel, Anne-Katrin Emde, Ho-Ryun Chung, Martin Vingron, Stefan A. Haas:
Breakpointer: using local mapping artifacts to support sequence breakpoint discovery from single-end reads. Bioinform. 28(7): 1024-1025 (2012) - [j71]Marcel H. Schulz, Daniel R. Zerbino, Martin Vingron, Ewan Birney:
Oases: robust de novo RNA-seq assembly across the dynamic range of expression levels. Bioinform. 28(8): 1086-1092 (2012) - [j70]Alena Mysicková, Martin Vingron:
Detection of interacting transcription factors in human tissues using predicted DNA binding affinity. BMC Genom. 13(S-1): S2 (2012) - [j69]Julia Lasserre, Steffen Arnold, Martin Vingron, Petra Reinke, Carl Hinrichs:
Predicting the outcome of renal transplantation. J. Am. Medical Informatics Assoc. 19(2): 255-262 (2012) - [j68]Shengyu Ni, Martin Vingron:
R2KS: A Novel Measure for Comparing Gene Expression Based on Ranked Gene Lists. J. Comput. Biol. 19(6): 766-775 (2012) - 2011
- [j67]Akdes Serin, Martin Vingron:
DeBi: Discovering Differentially Expressed Biclusters using a Frequent Itemset Approach. Algorithms Mol. Biol. 6: 18 (2011) - [j66]Ewa Szczurek, Florian Markowetz, Irit Gat-Viks, Przemyslaw Biecek, Jerzy Tiuryn, Martin Vingron:
Deregulation upon DNA damage revealed by joint analysis of context-specific perturbation data. BMC Bioinform. 12: 249 (2011) - [j65]Yuan Yuan, Yi-Ping Phoebe Chen, Shengyu Ni, Augix Guohua Xu, Lin Tang, Martin Vingron, Mehmet Somel, Philipp Khaitovich:
Development and application of a modified dynamic time warping algorithm (DTW-S) to analyses of primate brain expression time series. BMC Bioinform. 12: 347 (2011) - [j64]Jonathan Göke, Marc Jung, Sarah Behrens, Lukas Chavez, Sean O'Keeffe, Bernd Timmermann, Hans Lehrach, James Adjaye, Martin Vingron:
Combinatorial Binding in Human and Mouse Embryonic Stem Cells Identifies Conserved Enhancers Active in Early Embryonic Development. PLoS Comput. Biol. 7(12) (2011) - 2010
- [j63]Guofeng Meng, Axel Mosig, Martin Vingron:
A computational evaluation of over-representation of regulatory motifs in the promoter regions of differentially expressed genes. BMC Bioinform. 11: 267 (2010) - [j62]Ewa Szczurek, Przemyslaw Biecek, Jerzy Tiuryn, Martin Vingron:
Introducing Knowledge into Differential Expression Analysis. J. Comput. Biol. 17(8): 953-967 (2010) - [j61]Sarah Behrens, Martin Vingron:
Studying the Evolution of Promoter Sequences: A Waiting Time Problem. J. Comput. Biol. 17(12): 1591-1606 (2010) - [j60]Szymon M. Kielbasa, Holger Klein, Helge G. Roider, Martin Vingron, Nils Blüthgen:
TransFind - predicting transcriptional regulators for gene sets. Nucleic Acids Res. 38(Web-Server-Issue): 275-280 (2010) - 2009
- [j59]Helge G. Roider, Thomas Manke, Sean O'Keeffe, Martin Vingron, Stefan A. Haas:
PASTAA: identifying transcription factors associated with sets of co-regulated genes. Bioinform. 25(4): 435-442 (2009) - [j58]Utz J. Pape, Holger Klein, Martin Vingron:
Statistical detection of cooperative transcription factors with similarity adjustment. Bioinform. 25(16): 2103-2109 (2009) - [j57]Ho-Ryun Chung, Martin Vingron:
Comparison of sequence-dependent tiling array normalization approaches. BMC Bioinform. 10 (2009) - [j56]Xiaoqiu Huang, Martin Vingron:
Maximum Similarity: A New Formulation of Phylogenetic Reconstruction. J. Comput. Biol. 16(7): 887-896 (2009) - [j55]Irit Gat-Viks, Martin Vingron:
Evidence for Gene-Specific Rather Than Transcription Rate-Dependent Histone H3 Exchange in Yeast Coding Regions. PLoS Comput. Biol. 5(2) (2009) - 2008
- [j54]Robert Giegerich, Alvis Brazma, Inge Jonassen, Esko Ukkonen, Martin Vingron:
The BREW workshop series: a stimulating experience in PhD education. Briefings Bioinform. 9(3): 250-253 (2008) - [j53]Utz J. Pape, Sven Rahmann, Martin Vingron:
Natural similarity measures between position frequency matrices with an application to clustering. Bioinform. 24(3): 350-357 (2008) - [j52]Sebastian Bauer, Steffen Grossmann, Martin Vingron, Peter N. Robinson:
Ontologizer 2.0 - a multifunctional tool for GO term enrichment analysis and data exploration. Bioinform. 24(14): 1650-1651 (2008) - [j51]Ho-Joon Lee, Thomas Manke, Ricardo Bringas, Martin Vingron:
Prioritization of gene regulatory interactions from large-scale modules in yeast. BMC Bioinform. 9 (2008) - [j50]Utz J. Pape, Sven Rahmann, Fengzhu Sun, Martin Vingron:
Compound Poisson Approximation of the Number of Occurrences of a Position Frequency Matrix (PFM) on Both Strands. J. Comput. Biol. 15(6): 547-564 (2008) - [j49]Thomas Manke, Helge G. Roider, Martin Vingron:
Statistical Modeling of Transcription Factor Binding Affinities Predicts Regulatory Interactions. PLoS Comput. Biol. 4(3) (2008) - 2007
- [j48]Abha Singh Bais, Steffen Grossmann, Martin Vingron:
Simultaneous alignment and annotation of cis-regulatory regions. Bioinform. 23(2): 44-49 (2007) - [j47]Helge G. Roider, Aditi Kanhere, Thomas Manke, Martin Vingron:
Predicting transcription factor affinities to DNA from a biophysical model. Bioinform. 23(2): 134-141 (2007) - [j46]Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron:
Improved detection of overrepresentation of Gene-Ontology annotations with parent-child analysis. Bioinform. 23(22): 3024-3031 (2007) - [j45]Peter F. Arndt, Martin Vingron:
The Otto Warburg International Summer School and Workshop on Networks and Regulation. BMC Bioinform. 8(S-6) (2007) - [j44]Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert:
Integer linear programming approaches for non-unique probe selection. Discret. Appl. Math. 155(6-7): 840-856 (2007) - [j43]Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt:
Effects of Long-Range Correlations in DNA on Sequence Alignment Score Statistics. J. Comput. Biol. 14(5): 655-668 (2007) - [j42]Christoph Dieterich, M. W. Franz, Martin Vingron:
Developments in CORG: a gene-centric comparative genomics resource. Nucleic Acids Res. 35(Database-Issue): 32-35 (2007) - 2006
- [j41]Christine Steinhoff, Martin Vingron:
Normalization and quantification of differential expression in gene expression microarrays. Briefings Bioinform. 7(2): 166-177 (2006) - [j40]Hannes Luz, Martin Vingron:
Family specific rates of protein evolution. Bioinform. 22(10): 1166-1171 (2006) - [j39]Chen-Hsiang Yeang, Martin Vingron:
A joint model of regulatory and metabolic networks. BMC Bioinform. 7: 332 (2006) - 2005
- [j38]Morris Michael, Christoph Dieterich, Martin Vingron:
SITEBLAST-rapid and sensitive local alignment of genomic sequences employing motif anchors. Bioinform. 21(9): 2093-2094 (2005) - [j37]Antje Krause, Jens Stoye, Martin Vingron:
Large scale hierarchical clustering of protein sequences. BMC Bioinform. 6: 15 (2005) - [j36]Thomas Meinel, Antje Krause, Hannes Luz, Martin Vingron, Eike Staub:
The SYSTERS Protein Family Database in 2005. Nucleic Acids Res. 33(Database-Issue): 226-229 (2005) - [j35]Stefan Roepcke, Petko Fiziev, P. H. Seeburg, Martin Vingron:
SVC: structured visualization of evolutionary sequence conservation. Nucleic Acids Res. 33(Web-Server-Issue): 271-273 (2005) - [j34]Stefan Roepcke, Steffen Grossmann, Sven Rahmann, Martin Vingron:
T-Reg Comparator: an analysis tool for the comparison of position weight matrices. Nucleic Acids Res. 33(Web-Server-Issue): 438-441 (2005) - [j33]Shobhit Gupta, Martin Vingron, Stefan A. Haas:
T-STAG: resource and web-interface for tissue-specific transcripts and genes. Nucleic Acids Res. 33(Web-Server-Issue): 654-658 (2005) - 2004
- [j32]Torsten Crass, Iris Antes, Rico Basekow, Peer Bork, Christian Buning, Maik Christensen, Holger Claussen, Christian Ebeling, Peter Ernst, Valérie Gailus-Durner, Karl-Heinz Glatting, Rolf Gohla, Frank Gößling, Korbinian Grote, Karsten R. Heidtke, Alexander Herrmann, Sean O'Keeffe, O. Kießlich, Sven Kolibal, Jan O. Korbel, Thomas Lengauer, Ines Liebich, Mark van der Linden, Hannes Luz, Kathrin Meissner, Christian von Mering, Heinz-Theodor Mevissen, Hans-Werner Mewes, Holger Michael, Martin Mokrejs, Tobias Müller, Heike Pospisil, Matthias Rarey, Jens G. Reich, Ralf Schneider, Dietmar Schomburg, Steffen Schulze-Kremer, Knut Schwarzer, Ingolf Sommer, Stephan Springstubbe, Sándor Suhai, Gnanasekaran Thoppae, Martin Vingron, Jens Warfsmann, Thomas Werner, Daniel Wetzler, Edgar Wingender, Ralf Zimmer:
The Helmholtz Network for Bioinformatics: an integrative web portal for bioinformatics resources. Bioinform. 20(2): 268-270 (2004) - [j31]Shobhit Gupta, Dorothea Zink, Bernhard Korn, Martin Vingron, Stefan A. Haas:
Genome wide identification and classification of alternative splicing based on EST data. Bioinform. 20(16): 2579-2585 (2004) - [j30]Katja Rateitschak, Tobias Müller, Martin Vingron:
Annotating significant pairs of transcription factor binding sites in regulatory DNA. Silico Biol. 4(4): 479-487 (2004) - [j29]Anja von Heydebreck, Silke Sperling, Bogac Kaynak, Hans Lehrach, Martin Vingron:
Genexpressionsanalyse komplexer klinischer Phänotypen mittels cDNS-Arrays (Gene Expression Profiling of Complex Clinical Phenotypes using cDNA-Arrays). it Inf. Technol. 46(1): 26-30 (2004) - [j28]Henning Hermjakob, Luisa Montecchi-Palazzi, Chris Lewington, Sugath Mudali, Samuel Kerrien, Sandra E. Orchard, Martin Vingron, Bernd Roechert, Peter Roepstorff, Alfonso Valencia, Hanah Margalit, John Armstrong, Amos Bairoch, Gianni Cesareni, David James Sherman, Rolf Apweiler:
IntAct: an open source molecular interaction database. Nucleic Acids Res. 32(Database-Issue): 452-455 (2004) - 2003
- [j27]Benno Schwikowski, Martin Vingron:
Weighted sequence graphs: boosting iterated dynamic programming using locally suboptimal solutions. Discret. Appl. Math. 127(1): 95-117 (2003) - [j26]Heiko A. Schmidt, Ekkehard Petzold, Martin Vingron, Arndt von Haeseler:
Molecular phylogenetics: parallelized parameter estimation and quartet puzzling. J. Parallel Distributed Comput. 63(7-8): 719-727 (2003) - [j25]Christoph Dieterich, Haiyan Wang, Katja Rateitschak, Hannes Luz, Martin Vingron:
CORG: a database for COmparative Regulatory Genomics. Nucleic Acids Res. 31(1): 55-57 (2003) - 2002
- [j24]Kurt Fellenberg, Nicole C. Hauser, Benedikt Brors, Jörg D. Hoheisel, Martin Vingron:
Microarray data warehouse allowing for inclusion of experiment annotations in statistical analysis. Bioinform. 18(3): 423-433 (2002) - [j23]Heiko A. Schmidt, Korbinian Strimmer, Martin Vingron, Arndt von Haeseler:
TREE-PUZZLE: maximum likelihood phylogenetic analysis using quartets and parallel computing. Bioinform. 18(3): 502-504 (2002) - [j22]Dietmar Schomburg, Martin Vingron:
Bioinformatics research and education in Germany. Silico Biol. 2(3): 169-171 (2002) - [j21]Antje Krause, Stefan A. Haas, Eivind Coward, Martin Vingron:
SYSTERS, GeneNest, SpliceNest: exploring sequence space from genome to protein. Nucleic Acids Res. 30(1): 299-300 (2002) - 2001
- [j20]Rainer Spang, Martin Vingron:
Limits of homology detection by pairwise sequence comparison. Bioinform. 17(4): 338-342 (2001) - [j19]Martin Vingron:
Bioinformatics needs to adopt statistical thinking - Editorial. Bioinform. 17(5): 389-390 (2001) - 2000
- [j18]Tim Beißbarth, Kurt Fellenberg, Benedikt Brors, Rosa Arribas-Prat, Judith M. Boer, Nicole C. Hauser, Marcel Scheideler, Jörg D. Hoheisel, Günther Schütz, Annemarie Poustka, Martin Vingron:
Processing and quality control of DNA array hybridization data. Bioinform. 16(11): 1014-1022 (2000) - [j17]John D. Kececioglu, Hans-Peter Lenhof, Kurt Mehlhorn, Petra Mutzel, Knut Reinert, Martin Vingron:
A polyhedral approach to sequence alignment problems. Discret. Appl. Math. 104(1-3): 143-186 (2000) - [j16]Steffen Heber, Jens Stoye, Marcus Frohme, Jörg D. Hoheisel, Martin Vingron:
Contig Selection in Physical Mapping. J. Comput. Biol. 7(3-4): 395-408 (2000) - [j15]Tobias Müller, Martin Vingron:
Modeling Amino Acid Replacement. J. Comput. Biol. 7(6): 761-776 (2000) - [j14]Nicolas Pollet, Heiko A. Schmidt, Volker Gawantka, Martin Vingron, Christof Niehrs:
Axeldb: a Xenopus laevis database focusing on gene expression. Nucleic Acids Res. 28(1): 139-140 (2000) - [j13]Antje Krause, Jens Stoye, Martin Vingron:
The SYSTERS protein sequence cluster set. Nucleic Acids Res. 28(1): 270-272 (2000) - 1999
- [j12]Antje Krause, Pierre Nicodème, Erich Bornberg-Bauer, Marc Rehmsmeier, Martin Vingron:
WWW access to the SYSTERS protein sequence cluster set. Bioinform. 15(3): 262-263 (1999) - 1998
- [j11]Rainer Spang, Martin Vingron:
Statistics of large-scale sequence searching. Bioinform. 14(3): 279-284 (1998) - [j10]Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork:
Towards detection of orthologues in sequence databases. Bioinform. 14(3): 285-289 (1998) - [j9]Antje Krause, Martin Vingron:
A set-theoretic approach to database searching and clustering. Bioinform. 14(5): 430-438 (1998) - [j8]Oliver Eulenstein, Martin Vingron:
On the Equivalence of Two Tree Mapping Measures. Discret. Appl. Math. 88(1-3): 103-128 (1998) - [j7]Oliver Eulenstein, Boris G. Mirkin, Martin Vingron:
Duplication-Based Measures of Difference Between Gene and Species Trees. J. Comput. Biol. 5(1): 135-148 (1998) - [j6]Hans-Peter Lenhof, Knut Reinert, Martin Vingron:
A Polyhedral Approach to RNA Sequence Structure Alignment. J. Comput. Biol. 5(3): 517-530 (1998) - 1997
- [j5]Martin Vingron, Arndt von Haeseler:
Towards Integration of Multiple Alignment and Phylogenetic Tree Construction. J. Comput. Biol. 4(1): 23-34 (1997) - [j4]Benno Schwikowski, Martin Vingron:
The Deferred Path Heuristic for the Generalized Tree Alignment Problem. J. Comput. Biol. 4(3): 415-431 (1997) - 1996
- [j3]Martin Vingron, Michael S. Waterman:
Alignment Networks and Electrical Networks. Discret. Appl. Math. 71(1-3): 297-309 (1996) - 1989
- [j2]Renas Rechid, Martin Vingron, Patrick Argos:
A new interactive protein sequence alignment program and comparison of its results with widely used algorithms. Comput. Appl. Biosci. 5(2): 107-113 (1989) - [j1]Martin Vingron, P. Argos:
A fast and sensitive multiple sequence alignment algorithm. Comput. Appl. Biosci. 5(2): 115-121 (1989)
Conference and Workshop Papers
- 2019
- [c40]Philipp Benner, Martin Vingron:
ModHMM: A Modular Supra-Bayesian Genome Segmentation Method. RECOMB 2019: 35-50 - 2011
- [c39]Martin Vingron:
Computational Regulatory Genomics. CPM 2011: 14 - 2009
- [c38]Marcel H. Schulz, Sebastian Köhler, Sebastian Bauer, Martin Vingron, Peter N. Robinson:
Exact Score Distribution Computation for Similarity Searches in Ontologies. WABI 2009: 298-309 - 2008
- [c37]Utz J. Pape, Holger Klein, Martin Vingron:
Statistical Detection of Cooperative Transcription Factors with Similarity Adjustment. German Conference on Bioinformatics 2008: 96-105 - [c36]Marcel H. Schulz, David Weese, Tobias Rausch, Andreas Döring, Knut Reinert, Martin Vingron:
Fast and Adaptive Variable Order Markov Chain Construction. WABI 2008: 306-317 - 2007
- [c35]Ho-Ryun Chung, Dennis Kostka, Martin Vingron:
A physical model for tiling array analysis. ISMB/ECCB (Supplement of Bioinformatics) 2007: 80-86 - 2006
- [c34]Behshad Behzadi, Martin Vingron:
An Improved Algorithm for the Macro-evolutionary Phylogeny Problem. CPM 2006: 177-187 - [c33]Behshad Behzadi, Martin Vingron:
Reconstructing Domain Compositions of Ancestral Multi-domain Proteins. Comparative Genomics 2006: 1-10 - [c32]Steffen Grossmann, Sebastian Bauer, Peter N. Robinson, Martin Vingron:
An Improved Statistic for Detecting Over-Represented Gene Ontology Annotations in Gene Sets. RECOMB 2006: 85-98 - [c31]Philipp W. Messer, Ralf Bundschuh, Martin Vingron, Peter F. Arndt:
Alignment Statistics for Long-Range Correlated Genomic Sequences. RECOMB 2006: 426-440 - 2005
- [c30]Hannes Luz, Martin Vingron:
Familz specific rates of protein evolution. German Conference on Bioinformatics 2005: 133-144 - 2004
- [c29]Christoph Dieterich, Sven Rahmann, Martin Vingron:
Functional inference from non-random distributions of conserved predicted transcription factor binding sites. ISMB/ECCB (Supplement of Bioinformatics) 2004: 109-115 - [c28]Gunnar W. Klau, Sven Rahmann, Alexander Schliep, Martin Vingron, Knut Reinert:
Optimal robust non-unique probe selection using Integer Linear Programming. ISMB/ECCB (Supplement of Bioinformatics) 2004: 186-193 - [c27]Thomas Manke, Christoph Dieterich, Martin Vingron:
Detecting Functional Modules of Transcription Factor Binding Sites in the Human Genome. Regulatory Genomics 2004: 14-21 - 2003
- [c26]Christoph Dieterich, Ralf Herwig, Martin Vingron:
Exploring potential target genes of signaling pathways by predicting conserved transcription factor binding sites. ECCB 2003: 50-56 - [c25]Thomas Meinel, Martin Vingron, Antje Krause:
The SYSTERS protein family database: Taxon-related protein family size distributions and singleton frequencies. German Conference on Bioinformatics 2003: 103-108 - [c24]Christine Steinhoff, Tobias Müller, Ulrike A. Nuber, Martin Vingron:
Gaussian Mixture Density Estimation Applied to Microarray Data. IDA 2003: 418-429 - 2002
- [c23]Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron:
Variance Stabilization and Robust Normalization for Microarray Gene Expression Data. COMPSTAT 2002: 623-628 - [c22]Stéphanie Boué, Martin Vingron, Evgenia V. Kriventseva, Ina Koch:
Theoretical analysis of alternative splice forms using computational methods. ECCB 2002: 65-73 - [c21]Christoph Dieterich, Brian Cusack, Haiyan Wang, Katja Rateitschak, Antje Krause, Martin Vingron:
Annotating regulatory DNA based on man-mouse genomic comparison. ECCB 2002: 84-90 - [c20]Pierre Nicodème, T. Doerks, Martin Vingron:
Proteome analysis based on motif statistics. ECCB 2002: 161-171 - [c19]Wolfgang Huber, Anja von Heydebreck, Holger Sültmann, Annemarie Poustka, Martin Vingron:
Variance stabilization applied to microarray data calibration and to the quantification of differential expression. ISMB 2002: 96-104 - 2001
- [c18]Anja von Heydebreck, Wolfgang Huber, Annemarie Poustka, Martin Vingron:
Identifying splits with clear separation: a new class discovery method for gene expression data. ISMB (Supplement of Bioinformatics) 2001: 107-114 - 2000
- [c17]Richard Desper, Martin Vingron:
Tree fitting: an algebraic approach using profile distances. RECOMB 2000: 119-126 - [c16]Steffen Heber, Jens Stoye, Jörg D. Hoheisel, Martin Vingron:
Contig selection in physical mapping. RECOMB 2000: 155-164 - 1999
- [c15]Tobias Müller, Rainer Spang, Martin Vingron:
A new method for modeling protein evolution. German Conference on Bioinformatics 1999: 2-8 - [c14]Marc Rehmsmeier, Martin Vingron:
Phylogeny meets sequence search. German Conference on Bioinformatics 1999: 66-72 - [c13]Stefan Burkhardt, Andreas Crauser, Paolo Ferragina, Hans-Peter Lenhof, Eric Rivals, Martin Vingron:
q-gram based database searching using a suffix array (QUASAR). RECOMB 1999: 77-83 - 1998
- [c12]Martin Vingron:
Sequence alignment and phylogeny construction. Mathematical Support for Molecular Biology 1998: 53-63 - [c11]Antje Krause, Pierre Nicodème, Marc Rehmsmeier, Martin Vingron:
Automatic clustering of large sequence databases. German Conference on Bioinformatics 1998 - [c10]Heiko A. Schmidt, Martin Vingron:
pfastDNAml: Using Parallel Computing for Maximum Likelihood Phylogenetic Analysis. German Conference on Bioinformatics 1998 - [c9]Martin Vingron:
Alignment and Phylogeny Construction for Biological Sequences. IFIP Congress: Fundamentals - Foundations of Computer Science 1998: 27-30 - [c8]Hans-Peter Lenhof, Knut Reinert, Martin Vingron:
A polyhedral approach to RNA sequence structure alignment. RECOMB 1998: 153-162 - 1997
- [c7]Yan P. Yuan, Oliver Eulenstein, Martin Vingron, Peer Bork:
Towards detection of sequence orthologs. German Conference on Bioinformatics 1997: 25-30 - [c6]Rainer Spang, Martin Vingron:
Statistics of large scale sequence searching. German Conference on Bioinformatics 1997: 33-35 - [c5]Benno Schwikowski, Martin Vingron:
The deferred path heuristic for the generalized tree alignment problem. RECOMB 1997: 257-266 - 1996
- [c4]Oliver Eulenstein, Boris G. Mirkin, Martin Vingron:
Comparison of annotating duplication, tree mapping, and copying as methods to compare gene trees with species trees. Mathematical Hierarchies and Biology 1996: 71-94 - [c3]Benno Schwikowski, Martin Vingron:
A Clustering Approach to Generalized Tree Alignment with Application to Alu Repeats. German Conference on Bioinformatics - Selected Papers 1996: 115-124 - [c2]Benno Schwikowski, Martin Vingron:
Attacking Generalized tree Alignment by a Deferred Path Heuristic. German Conference on Bioinformatics 1996: 302-304 - 1993
- [c1]Martin Vingron, Pavel A. Pevzner:
Multiple Sequence Comparison and n-Dimensional Image Reconstruction. CPM 1993: 243-253
Editorship
- 2008
- [e5]Martin Vingron, Limsoon Wong:
Research in Computational Molecular Biology, 12th Annual International Conference, RECOMB 2008, Singapore, March 30 - April 2, 2008. Proceedings. Lecture Notes in Computer Science 4955, Springer 2008, ISBN 978-3-540-78838-6 [contents] - 2007
- [e4]Claudia Falter, Alexander Schliep, Joachim Selbig, Martin Vingron, Dirk Walther:
Proceedings of the German Conference on Bioinformatics, GCB 2007, September 26-28, 2007, Potsdam, Germany. LNI P-115, GI 2007, ISBN 978-3-88579-209-3 [contents] - 2006
- [e3]Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron:
Managing and Mining Genome Information: Frontiers in Bioinformatics, 30. October - 4. November 2005. Dagstuhl Seminar Proceedings 05441, Internationales Begegnungs- und Forschungszentrum für Informatik (IBFI), Schloss Dagstuhl, Germany 2006 [contents] - 2003
- [e2]Martin Vingron, Sorin Istrail, Pavel A. Pevzner, Michael S. Waterman, Webb Miller:
Proceedings of the Sventh Annual International Conference on Computational Biology, RECOMB 2003, Berlin, Germany, April 10-13, 2003. ACM 2003, ISBN 1-58113-635-8 [contents] - 1999
- [e1]Martin Farach-Colton, Fred S. Roberts, Martin Vingron, Michael S. Waterman:
Mathematical Support for Molecular Biology, Proceedings from the DIMACS Special Year, 1998. DIMACS Series in Discrete Mathematics and Theoretical Computer Science 47, DIMACS/AMS 1999, ISBN 978-0-8218-0826-9 [contents]
Informal and Other Publications
- 2018
- [i3]Edgar Steiger, Martin Vingron:
Sparse-Group Bayesian Feature Selection Using Expectation Propagation for Signal Recovery and Network Reconstruction. CoRR abs/1809.09367 (2018) - 2005
- [i2]Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron:
05441 Executive Summary - Managing and Mining Genome Information: Frontiers in Bioinformatics. Managing and Mining Genome Information 2005 - [i1]Jacek Blazewicz, Johann Christoph Freytag, Martin Vingron:
05441 Abstracts Collection - Managing and Mining Genome Information: Frontiers in Bioinformatics. Managing and Mining Genome Information 2005
Coauthor Index
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