
Alex L. Mitchell
Person information
- affiliation: European Molecular Biology Laboratory, EMBL-EBI, Hinxton, UK
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2010 – 2019
- 2019
- [j23]Alex L. Mitchell
, Teresa K. Attwood
, Patricia C. Babbitt, Matthias Blum
, Peer Bork, Alan Bridge
, Shoshana D. Brown, Hsin-Yu Chang
, Sara El-Gebali
, Matthew Fraser, Julian Gough, David Haft, Hongzhan Huang, Ivica Letunic, Rodrigo Lopez
, Aurelien Luciani
, Fábio Madeira
, Aron Marchler-Bauer, Huaiyu Mi, Darren A. Natale, Marco Necci
, Gift Nuka, Christine A. Orengo, Arun Prasad Pandurangan
, Typhaine Paysan-Lafosse
, Sebastien Pesseat, Simon C. Potter
, Matloob Qureshi
, Neil D. Rawlings
, Nicole Redaschi
, Lorna Richardson
, Catherine Rivoire, Gustavo A. Salazar
, Amaia Sangrador-Vegas, Christian J. A. Sigrist
, Ian Sillitoe, Granger G. Sutton, Narmada Thanki, Paul D. Thomas
, Silvio C. E. Tosatto
, Siew-Yit Yong, Robert D. Finn
:
InterPro in 2019: improving coverage, classification and access to protein sequence annotations. Nucleic Acids Res. 47(Database-Issue): D351-D360 (2019) - [r1]Teresa K. Attwood, Alex L. Mitchell:
The Evolution of Protein Family Databases. Encyclopedia of Bioinformatics and Computational Biology (2) 2019: 34-45 - 2018
- [j22]Alex L. Mitchell
, Maxim Scheremetjew
, Hubert Denise
, Simon C. Potter
, Aleksandra Tarkowska
, Matloob Qureshi
, Gustavo A. Salazar
, Sebastien Pesseat
, Miguel A. Boland
, Fiona M. I. Hunter
, Petra ten Hoopen
, Blaise T. F. Alako
, Clara Amid
, Darren J. Wilkinson
, Thomas P. Curtis, Guy Cochrane
, Robert D. Finn
:
EBI Metagenomics in 2017: enriching the analysis of microbial communities, from sequence reads to assemblies. Nucleic Acids Res. 46(Database-Issue): D726-D735 (2018) - [i1]Folker Meyer, Robert D. Finn, Wolfgang Gerlach, Alex L. Mitchell, Travis Harrison, Andreas Wilke:
On the way to research objects for environmental genomics (or metagenomics). RO 2018 - 2017
- [j21]Robert D. Finn, Teresa K. Attwood
, Patricia C. Babbitt, Alex Bateman
, Peer Bork, Alan Bridge
, Hsin-Yu Chang
, Zsuzsanna Dosztányi, Sara El-Gebali
, Matthew Fraser, Julian Gough, David Haft, Gemma L. Holliday
, Hongzhan Huang, Xiaosong Huang
, Ivica Letunic
, Rodrigo Lopez, Shennan Lu, Aron Marchler-Bauer
, Huaiyu Mi, Jaina Mistry, Darren A. Natale, Marco Necci
, Gift Nuka, Christine A. Orengo, Youngmi Park
, Sebastien Pesseat
, Damiano Piovesan
, Simon C. Potter
, Neil D. Rawlings, Nicole Redaschi
, Lorna Richardson
, Catherine Rivoire
, Amaia Sangrador-Vegas
, Christian J. A. Sigrist
, Ian Sillitoe, Ben Smithers
, Silvano Squizzato, Granger G. Sutton, Narmada Thanki, Paul D. Thomas
, Silvio C. E. Tosatto
, Cathy H. Wu, Ioannis Xenarios, Lai-Su L. Yeh, Siew-Yit Yong, Alex L. Mitchell
:
InterPro in 2017 - beyond protein family and domain annotations. Nucleic Acids Res. 45(Database-Issue): D190-D199 (2017) - 2016
- [j20]Amaia Sangrador-Vegas
, Alex L. Mitchell
, Hsin-Yu Chang
, Siew-Yit Yong
, Robert D. Finn
:
GO annotation in InterPro: why stability does not indicate accuracy in a sea of changing annotations. Database J. Biol. Databases Curation 2016 (2016) - [j19]Robert D. Finn, Penelope Coggill, Ruth Y. Eberhardt
, Sean R. Eddy
, Jaina Mistry, Alex L. Mitchell, Simon C. Potter
, Marco Punta, Matloob Qureshi
, Amaia Sangrador-Vegas
, Gustavo A. Salazar
, John G. Tate, Alex Bateman:
The Pfam protein families database: towards a more sustainable future. Nucleic Acids Res. 44(Database-Issue): 279-285 (2016) - [j18]Alex L. Mitchell, François Bucchini, Guy Cochrane, Hubert Denise, Petra ten Hoopen, Matthew Fraser
, Sebastien Pesseat
, Simon C. Potter
, Maxim Scheremetjew, Peter Sterk
, Robert D. Finn:
EBI metagenomics in 2016 - an expanding and evolving resource for the analysis and archiving of metagenomic data. Nucleic Acids Res. 44(Database-Issue): 595-603 (2016) - [j17]Samuel C. Forster
, Hilary P. Browne
, Nitin Kumar, Martin Hunt
, Hubert Denise, Alex L. Mitchell, Robert D. Finn, Trevor D. Lawley:
HPMCD: the database of human microbial communities from metagenomic datasets and microbial reference genomes. Nucleic Acids Res. 44(Database-Issue): 604-609 (2016) - [c4]Mélanie Courtot, Alex L. Mitchell, Maxim Scheremetjew, Janet Piñero González, Laura I. Furlong, Robert D. Finn, Helen E. Parkinson:
Slim-o-matic: a Semi-Automated Way to Generate Gene Ontology Slims. SWAT4LS 2016 - 2015
- [j16]Alex L. Mitchell
, Hsin-Yu Chang
, Louise C. Daugherty, Matthew Fraser
, Sarah Hunter
, Rodrigo Lopez, Craig McAnulla, Conor McMenamin, Gift Nuka, Sebastien Pesseat
, Amaia Sangrador-Vegas
, Maxim Scheremetjew
, Claudia Rato
, Siew-Yit Yong
, Alex Bateman
, Marco Punta, Teresa K. Attwood
, Christian J. A. Sigrist
, Nicole Redaschi
, Catherine Rivoire
, Ioannis Xenarios, Daniel Kahn, Dominique Guyot, Peer Bork
, Ivica Letunic
, Julian Gough, Matt E. Oates
, Daniel H. Haft, Hongzhan Huang, Darren A. Natale, Cathy H. Wu, Christine A. Orengo, Ian Sillitoe, Huaiyu Mi, Paul D. Thomas
, Robert D. Finn
:
The InterPro protein families database: the classification resource after 15 years. Nucleic Acids Res. 43(Database-Issue): 213-221 (2015) - 2014
- [j15]Philip Jones, David Binns, Hsin-Yu Chang
, Matthew Fraser
, Weizhong Li, Craig McAnulla, Hamish McWilliam
, John Maslen, Alex L. Mitchell, Gift Nuka, Sebastien Pesseat
, Antony F. Quinn
, Amaia Sangrador-Vegas
, Maxim Scheremetjew, Siew-Yit Yong
, Rodrigo Lopez, Sarah Hunter:
InterProScan 5: genome-scale protein function classification. Bioinform. 30(9): 1236-1240 (2014) - [j14]Sarah Hunter
, Matthew Corbett, Hubert Denise
, Matthew Fraser
, Alejandra N. González-Beltrán
, Christopher I. Hunter
, Philip Jones, Rasko Leinonen, Craig McAnulla, Eamonn Maguire, John Maslen, Alex L. Mitchell
, Gift Nuka, Arnaud Oisel, Sebastien Pesseat, Rajesh Radhakrishnan
, Philippe Rocca-Serra, Maxim Scheremetjew
, Peter Sterk
, Daniel Vaughan
, Guy Cochrane
, Dawn Field, Susanna-Assunta Sansone
:
EBI metagenomics - a new resource for the analysis and archiving of metagenomic data. Nucleic Acids Res. 42(Database-Issue): 600-606 (2014) - 2013
- [j13]Tony E. Lewis, Ian Sillitoe, Antonina Andreeva
, Tom L. Blundell, Daniel W. A. Buchan, Cyrus Chothia, Alison L. Cuff, Jose M. Dana
, Ioannis Filippis, Julian Gough, Sarah Hunter
, David T. Jones, Lawrence A. Kelley, Gerard J. Kleywegt
, Federico Minneci, Alex L. Mitchell
, Alexey G. Murzin, Bernardo Ochoa-Montaño, Owen J. L. Rackham
, James Smith
, Michael J. E. Sternberg
, Sameer Velankar
, Corin Yeats, Christine A. Orengo:
Genome3D: a UK collaborative project to annotate genomic sequences with predicted 3D structures based on SCOP and CATH domains. Nucleic Acids Res. 41(Database-Issue): 499-507 (2013) - 2012
- [j12]Chris I. Hunter
, Alex L. Mitchell
, Philip Jones, Craig McAnulla, Sebastien Pesseat
, Maxim Scheremetjew
, Sarah Hunter
:
Metagenomic analysis: the challenge of the data bonanza. Briefings Bioinform. 13(6): 743-746 (2012) - [j11]Teresa K. Attwood
, Alain Coletta, Gareth Muirhead, Athanasia Pavlopoulou
, Peter B. Philippou, Ivan Popov, Carlos Romá-Mateo
, Athina Theodosiou
, Alex L. Mitchell
:
The PRINTS database: a fine-grained protein sequence annotation and analysis resource - its status in 2012. Database J. Biol. Databases Curation 2012 (2012) - [j10]Sarah W. Burge, Elizabeth Kelly, David Lonsdale, Prudence Mutowo-Meullenet
, Craig McAnulla, Alex L. Mitchell
, Amaia Sangrador-Vegas
, Siew-Yit Yong
, Nicola J. Mulder
, Sarah Hunter
:
Manual GO annotation of predictive protein signatures: the InterPro approach to GO curation. Database J. Biol. Databases Curation 2012 (2012) - [j9]Sarah Hunter
, Philip Jones, Alex L. Mitchell
, Rolf Apweiler
, Teresa K. Attwood
, Alex Bateman
, Thomas Bernard
, David Binns, Peer Bork
, Sarah W. Burge, Edouard De Castro
, Penny C. Coggill, Matthew Corbett, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn
, Matthew Fraser
, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Ivica Letunic
, David Lonsdale, Rodrigo Lopez
, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Conor McMenamin, Huaiyu Mi, Prudence Mutowo-Meullenet
, Nicola J. Mulder
, Darren A. Natale, Christine A. Orengo, Sebastien Pesseat, Marco Punta, Antony F. Quinn
, Catherine Rivoire
, Amaia Sangrador-Vegas
, Jeremy D. Selengut, Christian J. A. Sigrist
, Maxim Scheremetjew
, John G. Tate, Manjulapramila Thimmajanarthanan, Paul D. Thomas
, Cathy H. Wu, Corin Yeats, Siew-Yit Yong
:
InterPro in 2011: new developments in the family and domain prediction database. Nucleic Acids Res. 40(Database-Issue): 306-312 (2012)
2000 – 2009
- 2009
- [j8]Sarah Hunter
, Rolf Apweiler
, Teresa K. Attwood
, Amos Bairoch
, Alex Bateman
, David Binns, Peer Bork
, Ujjwal Das, Louise C. Daugherty, Lauranne Duquenne, Robert D. Finn
, Julian Gough, Daniel H. Haft, Nicolas Hulo, Daniel Kahn, Elizabeth Kelly, Aurélie Laugraud, Ivica Letunic
, David Lonsdale, Rodrigo Lopez
, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry
, Alex L. Mitchell
, Nicola J. Mulder
, Darren A. Natale, Christine A. Orengo, Antony F. Quinn
, Jeremy D. Selengut, Christian J. A. Sigrist
, Manjula Thimma, Paul D. Thomas
, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats:
InterPro: the integrative protein signature database. Nucleic Acids Res. 37(Database-Issue): 211-215 (2009) - 2007
- [j7]Nicola J. Mulder
, Rolf Apweiler
, Teresa K. Attwood
, Amos Bairoch
, Alex Bateman
, David Binns, Peer Bork
, Virginie Buillard, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Louise C. Daugherty, Mark Dibley, Robert D. Finn
, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicolas Hulo, Sarah Hunter
, Daniel Kahn, Alexander Kanapin
, Anish Kejariwal, Alberto Labarga
, Petra S. Langendijk-Genevaux
, David Lonsdale, Rodrigo Lopez
, Ivica Letunic
, Martin Madera, John Maslen, Craig McAnulla, Jennifer McDowall, Jaina Mistry
, Alex L. Mitchell
, Anastasia N. Nikolskaya, Sandra E. Orchard
, Christine A. Orengo, Robert Petryszak
, Jeremy D. Selengut, Christian J. A. Sigrist
, Paul D. Thomas
, Franck Valentin, Derek Wilson, Cathy H. Wu, Corin Yeats:
New developments in the InterPro database. Nucleic Acids Res. 35(Database-Issue): 224-228 (2007) - [c3]Jee-Hyub Kim
, Alex L. Mitchell
, Teresa K. Attwood
, Melanie Hilario:
Learning to extract relations for protein annotation. ISMB/ECCB (Supplement of Bioinformatics) 2007: 256-263 - 2005
- [j6]Alex L. Mitchell
, Anna Divoli, Jee-Hyub Kim
, Melanie Hilario, I. Selimas, Teresa K. Attwood
:
METIS: multiple extraction techniques for informative sentences. Bioinform. 21(22): 4196-4197 (2005) - [j5]Nicola J. Mulder
, Rolf Apweiler
, Teresa K. Attwood
, Amos Bairoch
, Alex Bateman
, David Binns, Paul Bradley, Peer Bork
, Phillip Bucher, Lorenzo Cerutti, Richard R. Copley, Emmanuel Courcelle, Ujjwal Das, Richard Durbin
, Wolfgang Fleischmann, Julian Gough, Daniel H. Haft, Nicola Harte, Nicolas Hulo, Daniel Kahn, Alexander Kanapin
, Maria Krestyaninova
, David Lonsdale, Rodrigo Lopez
, Ivica Letunic
, Martin Madera, John Maslen, Jennifer McDowall, Alex L. Mitchell
, Anastasia N. Nikolskaya, Sandra E. Orchard
, Marco Pagni
, Chris P. Ponting
, Emmanuel Quevillon, Jeremy D. Selengut, Christian J. A. Sigrist
, Ville Silventoinen, David J. Studholme
, Robert Vaughan
, Cathy H. Wu:
InterPro, progress and status in 2005. Nucleic Acids Res. 33(Database-Issue): 201-205 (2005) - 2004
- [c2]Melanie Hilario, Alex L. Mitchell, Jee-Hyub Kim, Paul Bradley, Terri K. Attwood:
Classifying Protein Fingerprints. PKDD 2004: 197-208 - 2003
- [j4]Alex L. Mitchell
, Jacqueline Renée Reich, Terri K. Attwood
:
PRECIS: Protein reports engineered from concise information in SWISS-PROT. Bioinform. 19(13): 1664-1671 (2003) - [j3]Terri K. Attwood
, Paul Bradley, Darren R. Flower, Anna Gaulton
, Neil Maudling, Alex L. Mitchell
, G. Moulton, A. Nordle, K. Paine, P. Taylor, A. Uddin, Christianna Zygouri:
PRINTS and its automatic supplement, prePRINTS. Nucleic Acids Res. 31(1): 400-402 (2003) - 2002
- [j2]Terri K. Attwood
, Martin J. Blythe, Darren R. Flower, Anna Gaulton
, J. E. Mabey, Neil Maudling, L. McGregor, Alex L. Mitchell
, G. Moulton, K. Paine, Philip Scordis
:
PRINTS and PRINTS-S shed light on protein ancestry. Nucleic Acids Res. 30(1): 239-241 (2002) - 2001
- [j1]Jacqueline Renée Reich, Alex L. Mitchell, Carole A. Goble
, Terri K. Attwood
:
Toward More Intelligent Annotation Tools: A Prototype. IEEE Intell. Syst. 16(6): 42-51 (2001) - [c1]Phillip W. Lord, Jacqueline Renée Reich, Alex L. Mitchell, Robert D. Stevens, Terri K. Attwood
, Carole A. Goble:
PRECIS: An Automated Pipeline for Producing Concise Reports About Proteins. BIBE 2001: 57-64
Coauthor Index
aka: Teresa K. Attwood

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