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2020 – today
- 2024
[j10]Candida Manelfi, Valerio Tazzari, Filippo Lunghini, Carmen Cerchia
, Anna Fava, Alessandro Pedretti, Pieter F. W. Stouten, Giulio Vistoli, Andrea Rosario Beccari:
"DompeKeys": a set of novel substructure-based descriptors for efficient chemical space mapping, development and structural interpretation of machine learning models, and indexing of large databases. J. Cheminformatics 16(1): 21 (2024)- [j9]Ya Chen, Thomas Seidel, Roxane Axel Jacob, Steffen Hirte, Angelica Mazzolari, Alessandro Pedretti, Giulio Vistoli, Thierry Langer, Filip Miljkovic, Johannes Kirchmair:
Active Learning Approach for Guiding Site-of-Metabolism Measurement and Annotation. J. Chem. Inf. Model. 64(2): 348-358 (2024) - [c2]Marco Anisetti, Claudio A. Ardagna, Massimo Banzi, Filippo Berto, Ruslan Bondaruc, Ernesto Damiani, Alessandro Pedretti, Arianna Pisati, Antonio Retico:
MUSA: A Platform for Data-Intensive Services in Edge-Cloud Continuum. AINA (5) 2024: 327-337 - [c1]Giovanni Bocchi, Patrizio Frosini, Alessandra Micheletti, Alessandro Pedretti, Gianluca Palermo, Davide Gadioli, Carmen Gratteri, Filippo Lunghini, Andrea Rosario Beccari, Anna Fava, Carmine Talarico:
A geometric XAI approach to protein pocket detection. xAI (Late-breaking Work, Demos, Doctoral Consortium) 2024: 217-224 - 2022
- [i1]Giovanni Bocchi, Patrizio Frosini, Alessandra Micheletti, Alessandro Pedretti, Carmen Gratteri, Filippo Lunghini, Andrea Rosario Beccari, Carmine Talarico:
GENEOnet: A new machine learning paradigm based on Group Equivariant Non-Expansive Operators. An application to protein pocket detection. CoRR abs/2202.00451 (2022) - 2021
- [j8]Alessandro Pedretti, Angelica Mazzolari, Silvia Gervasoni, Laura Fumagalli, Giulio Vistoli:
The VEGA suite of programs: an versatile platform for cheminformatics and drug design projects. Bioinform. 37(8): 1174-1175 (2021)
2010 – 2019
- 2019
- [j7]Martin Sícho, Conrad Stork, Angelica Mazzolari, Christina de Bruyn Kops, Alessandro Pedretti, Bernard Testa, Giulio Vistoli, Daniel Svozil, Johannes Kirchmair:
FAME 3: Predicting the Sites of Metabolism in Synthetic Compounds and Natural Products for Phase 1 and Phase 2 Metabolic Enzymes. J. Chem. Inf. Model. 59(8): 3400-3412 (2019) - 2018
- [j6]Alessandro Pedretti, Angelica Mazzolari, Giulio Vistoli:
WarpEngine, a Flexible Platform for Distributed Computing Implemented in the VEGA Program and Specially Targeted for Virtual Screening Studies. J. Chem. Inf. Model. 58(6): 1154-1160 (2018) - 2017
- [j5]Giulio Vistoli, Angelica Mazzolari, Bernard Testa, Alessandro Pedretti:
Binding Space Concept: A New Approach To Enhance the Reliability of Docking Scores and Its Application to Predicting Butyrylcholinesterase Hydrolytic Activity. J. Chem. Inf. Model. 57(7): 1691-1702 (2017) - 2016
- [j4]Francesco Pappalardo, Epifanio Fichera, Nicoletta Paparone, Alessandro Lombardo, Marzio Pennisi, Giulia Russo, Marco Leotta, Alessandro Pedretti, Francesco De Fiore, Santo Motta:
A computational model to predict the immune system activation by citrus-derived vaccine adjuvants. Bioinform. 32(17): 2672-2680 (2016) - 2014
- [j3]Alessandro Di Domizio, Alessandro Vitriolo, Giulio Vistoli, Alessandro Pedretti:
SPILLO-PBSS: Detecting hidden binding sites within protein 3D-structures through a flexible structure-based approach. J. Comput. Chem. 35(27): 2005-2017 (2014) - 2010
- [j2]Giulio Vistoli, Alessandro Pedretti, Angelica Mazzolari, Bernard Testa:
Homology modeling and metabolism prediction of human carboxylesterase-2 using docking analyses by GriDock: a parallelized tool based on AutoDock 4.0. J. Comput. Aided Mol. Des. 24(9): 771-787 (2010)
2000 – 2009
- 2004
- [j1]Alessandro Pedretti, Luigi Villa, Giulio Vistoli:
VEGA - An open platform to develop chemo-bio-informatics applications, using plug-in architecture and script programming. J. Comput. Aided Mol. Des. 18(3): 167-173 (2004)
Coauthor Index
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