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Tomás Pluskal

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affiliation: Institute of Organic Chemistry and Biochemistry, Prague, Czech Republic

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Journal Articles

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2023
[j4]
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  dblp key:
  - journals/bmcbi/FallonCMWP23
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  - https://dblp.org/rec/journals/bmcbi/FallonCMWP23
Timothy R. Fallon, Tereza Calounová, Martin Mokrejs, Jing-Ke Weng, Tomás Pluskal:
transXpress: a Snakemake pipeline for streamlined de novo transcriptome assembly and annotation. BMC Bioinform. 24(1): 133 (2023)
2017
[j3]
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  - journals/jcheminf/WillighagenMABC17
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  - https://dblp.org/rec/journals/jcheminf/WillighagenMABC17
Egon L. Willighagen, John W. Mayfield, Jonathan Alvarsson, Arvid Berg, Lars Carlsson, Nina Jeliazkova, Stefan Kuhn, Tomás Pluskal, Miquel Rojas-Chertó, Ola Spjuth, Gilleain M. Torrance, Chris T. A. Evelo, Rajarshi Guha, Christoph Steinbeck:
The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. J. Cheminformatics 9(1): 33:1-33:19 (2017)
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  - journals/jcheminf/WillighagenMABC17a
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Egon L. Willighagen, John W. Mayfield, Jonathan Alvarsson, Arvid Berg, Lars Carlsson, Nina Jeliazkova, Stefan Kuhn, Tomás Pluskal, Miquel Rojas-Chertó, Ola Spjuth, Gilleain M. Torrance, Chris T. A. Evelo, Rajarshi Guha, Christoph Steinbeck:
Erratum to: The Chemistry Development Kit (CDK) v2.0: atom typing, depiction, molecular formulas, and substructure searching. J. Cheminformatics 9(1): 53 (2017)
2010
[j1]
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  - journals/bmcbi/PluskalCVO10
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Tomás Pluskal, Sandra Castillo, Alejandro Villar-Briones, Matej Oresic:
MZmine 2: Modular framework for processing, visualizing, and analyzing mass spectrometry-based molecular profile data. BMC Bioinform. 11: 395 (2010)

Informal and Other Publications

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2023
[i1]
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  - journals/corr/abs-2310-18515
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Anton Bushuiev, Roman Bushuiev, Anatolii Filkin, Petr Kouba, Marketa Gabrielova, Michal Gabriel, Jirí Sedlár, Tomás Pluskal, Jirí Damborský, Stanislav Mazurenko, Josef Sivic:
Learning to design protein-protein interactions with enhanced generalization. CoRR abs/2310.18515 (2023)

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