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Claudine Médigue
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2020 – today
- 2021
- [j14]Guillaume Gautreau, Adelme Bazin, Mathieu Gachet, Rémi Planel, Laura Burlot, Mathieu Dubois, Amandine Perrin, Claudine Médigue, Alexandra Calteau, Stéphane Cruveiller, Catherine Matias, Christophe Ambroise, Eduardo P. C. Rocha, David Vallenet:
Correction: PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph. PLoS Comput. Biol. 17(12) (2021) - 2020
- [j13]David Vallenet
, Alexandra Calteau
, Mathieu Dubois, Paul Amours, Adelme Bazin
, Mylène Beuvin, Laura Burlot, Xavier Bussell, Stéphanie Fouteau, Guillaume Gautreau
, Aurélie Lajus, Jordan Langlois, Rémi Planel, David Roche, Johan Rollin
, Zoé Rouy, Valentin Sabatet
, Claudine Médigue
:
MicroScope: an integrated platform for the annotation and exploration of microbial gene functions through genomic, pangenomic and metabolic comparative analysis. Nucleic Acids Res. 48(Database-Issue): D579-D589 (2020) - [j12]Guillaume Gautreau
, Adelme Bazin
, Mathieu Gachet, Rémi Planel
, Laura Burlot, Mathieu Dubois
, Amandine Perrin
, Claudine Médigue
, Alexandra Calteau, Stéphane Cruveiller
, Catherine Matias, Christophe Ambroise, Eduardo P. C. Rocha
, David Vallenet
:
PPanGGOLiN: Depicting microbial diversity via a partitioned pangenome graph. PLoS Comput. Biol. 16(3) (2020)
2010 – 2019
- 2019
- [j11]Claudine Médigue, Alexandra Calteau
, Stéphane Cruveiller, Mathieu Gachet, Guillaume Gautreau
, Adrien Josso, Aurélie Lajus, Jordan Langlois, Hugo Pereira, Rémi Planel, David Roche, Johan Rollin
, Zoé Rouy, David Vallenet:
MicroScope - an integrated resource for community expertise of gene functions and comparative analysis of microbial genomic and metabolic data. Briefings Bioinform. 20(4): 1071-1084 (2019) - 2018
- [j10]Jonathan Mercier
, Adrien Josso, Claudine Médigue, David Vallenet
:
GROOLS: reactive graph reasoning for genome annotation through biological processes. BMC Bioinform. 19(1): 132:1-132:12 (2018) - 2017
- [j9]David Vallenet, Alexandra Calteau, Stéphane Cruveiller, Mathieu Gachet, Aurélie Lajus, Adrien Josso, Jonathan Mercier, Alexandre Renaux
, Johan Rollin
, Zoé Rouy, David Roche, Claude Scarpelli, Claudine Médigue:
MicroScope in 2017: an expanding and evolving integrated resource for community expertise of microbial genomes. Nucleic Acids Res. 45(Database-Issue): D517-D528 (2017) - 2015
- [j8]Maria Sorokina
, Claudine Médigue, David Vallenet:
A new network representation of the metabolism to detect chemical transformation modules. BMC Bioinform. 16: 385:1-385:9 (2015) - 2013
- [j7]David Vallenet
, Eugeni Belda
, Alexandra Calteau
, Stéphane Cruveiller, Stefan Engelen
, Aurélie Lajus, François Le Fèvre, Cyrille Longin, Damien Mornico, David Roche, Zoé Rouy, Gregory Salvignol, Claude Scarpelli, Adam Alexander Thil Smith
, Marion Weiman, Claudine Médigue:
MicroScope - an integrated microbial resource for the curation and comparative analysis of genomic and metabolic data. Nucleic Acids Res. 41(Database-Issue): 636-647 (2013) - 2012
- [j6]Adam Alexander Thil Smith
, Eugeni Belda
, Alain Viari, Claudine Médigue, David Vallenet
:
The CanOE Strategy: Integrating Genomic and Metabolic Contexts across Multiple Prokaryote Genomes to Find Candidate Genes for Orphan Enzymes. PLoS Comput. Biol. 8(5) (2012)
2000 – 2009
- 2009
- [j5]David Vallenet
, Stefan Engelen
, Damien Mornico, Stéphane Cruveiller, Ludovic Fleury, Aurélie Lajus, Zoé Rouy, David Roche, Gregory Salvignol, Claude Scarpelli, Claudine Médigue:
MicroScope: a platform for microbial genome annotation and comparative genomics. Database J. Biol. Databases Curation 2009 (2009) - 2005
- [j4]Stéphane Cruveiller, Jérôme Le Saux, David Vallenet
, Aurélie Lajus, Stéphanie Bocs, Claudine Médigue:
MICheck: a web tool for fast checking of syntactic annotations of bacterial genomes. Nucleic Acids Res. 33(Web-Server-Issue): 471-479 (2005) - 2003
- [j3]Stéphanie Bocs, Stéphane Cruveiller, David Vallenet
, Grégory Nuel, Claudine Médigue:
AMIGene: Annotation of MIcrobial Genes. Nucleic Acids Res. 31(13): 3723-3726 (2003) - 2002
- [j2]Stéphanie Bocs, Antoine Danchin
, Claudine Médigue:
Re-annotation of genome microbial CoDing-Sequences: finding new genes and inaccurately annotated genes. BMC Bioinform. 3: 5 (2002)
1990 – 1999
- 1999
- [j1]Claudine Médigue, François Rechenmann, Antoine Danchin
, Alain Viari:
Imagene: an integrated computer environment for sequence annotation and analysis. Bioinform. 15(1): 2-15 (1999) - 1995
- [c2]Claudine Médigue, Thierry Vermat, Gilles Bisson, Alain Viari, Antoine Danchin:
Cooperative Computer System For Genome Sequence Analysis. ISMB 1995: 249-258 - 1993
- [c1]Olivier Schmeltzer, Claudine Médigue, P. Uvietta, François Rechenmann, Frank Dorkeld, Guy Perrière, Christian Gautier:
Building Large Knowledge Bases in Molecular Biology. ISMB 1993: 345-353
Coauthor Index
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