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Hasan Metin Aktulga
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2020 – today
- 2024
- [j23]Shihab Shahriar Khan, Bryce Palmer, Christopher Edelmaier, Hasan Metin Aktulga:
OpenRAND: A performance portable, reproducible random number generation library for parallel computations. SoftwareX 27: 101773 (2024) - [i8]Doga Dikbayir, Abdel Alsnayyan, Vishnu Naresh Boddeti, Balasubramaniam Shanker, Hasan Metin Aktulga:
A Deep Learning Framework for Three Dimensional Shape Reconstruction from Phaseless Acoustic Scattering Far-field Data. CoRR abs/2407.09525 (2024) - 2023
- [j22]Abdullah Alperen, Hasan Metin Aktulga
, Pieter Maris, Chao Yang
:
Hybrid eigensolvers for nuclear configuration interaction calculations. Comput. Phys. Commun. 292: 108888 (2023) - [j21]Madushanka Manathunga
, Hasan Metin Aktulga
, Andreas W. Götz
, Kenneth M. Merz Jr.
:
Quantum Mechanics/Molecular Mechanics Simulations on NVIDIA and AMD Graphics Processing Units. J. Chem. Inf. Model. 63(3): 711-717 (2023) - [j20]David A. Case
, Hasan Metin Aktulga, Kellon Belfon, David S. Cerutti, G. Andrés Cisneros
, Vinícius Wilian D. Cruzeiro
, Negin Forouzesh, Timothy J. Giese
, Andreas W. Götz
, Holger Gohlke
, Saeed Izadi, Koushik Kasavajhala, Mehmet Cagri Kaymak, Edward King, Tom Kurtzman, Tai-Sung Lee
, Pengfei Li
, Jian Liu
, Tyler Luchko
, Ray Luo, Madushanka Manathunga
, Matías R. Machado
, Hai Minh Nguyen, Kurt A. O'Hearn, Alexey V. Onufriev
, Feng Pan
, Sergio Pantano
, Ruxi Qi, Ali Rahnamoun, Ali Risheh, Stephan Schott-Verdugo
, Akhil Shajan, Jason M. Swails, Junmei Wang
, Haixin Wei
, Xiongwu Wu, Yongxian Wu
, Shi Zhang, Shiji Zhao
, Qiang Zhu
, Thomas E. Cheatham
, Daniel R. Roe, Adrian E. Roitberg
, Carlos Simmerling
, Darrin M. York
, Maria C. Nagan
, Kenneth M. Merz Jr.
:
AmberTools. J. Chem. Inf. Model. 63(20): 6183-6191 (2023) - [c21]Mehmet Cagri Kaymak, Samuel S. Schoenholz, Ekin D. Cubuk, Kurt A. O'Hearn, Kenneth M. Merz Jr., Hasan Metin Aktulga:
End-to-End Differentiable Reactive Molecular Dynamics Simulations Using JAX. ISC 2023: 202-219 - [i7]Abdullah Alperen, Hasan Metin Aktulga, Pieter Maris, Chao Yang:
Hybrid Eigensolvers for Nuclear Configuration Interaction Calculations. CoRR abs/2305.15552 (2023) - [i6]Shihab Shahriar Khan, Bryce Palmer, Christopher Edelmaier, Hasan Metin Aktulga:
OpenRAND: A Performance Portable, Reproducible Random Number Generation Library for Parallel Computations. CoRR abs/2310.19925 (2023) - 2022
- [j19]Aidan P. Thompson
, Hasan Metin Aktulga
, Richard Berger
, Dan S. Bolintineanu, W. Michael Brown, Paul S. Crozier
, Pieter J. in 't Veld
, Axel Kohlmeyer
, Stan G. Moore, Trung Dac Nguyen
, Ray Shan, Mark J. Stevens, Julien Tranchida, Christian Trott
, Steven J. Plimpton:
LAMMPS - a flexible simulation tool for particle-based materials modeling at the atomic, meso, and continuum scales. Comput. Phys. Commun. 271: 108171 (2022) - [j18]Michael P. Lingg
, Stephen M. Hughey, Balasubramaniam Shanker, Hasan Metin Aktulga
:
High Performance Evaluation of Helmholtz Potentials Using the Multi-Level Fast Multipole Algorithm. IEEE Trans. Parallel Distributed Syst. 33(12): 3651-3666 (2022) - [c20]Fazlay Rabbi, Christopher S. Daley, Ümit V. Çatalyürek, Hasan Metin Aktulga
:
A Portable Sparse Solver Framework for Large Matrices on Heterogeneous Architectures. HIPC 2022: 145-155 - 2021
- [c19]Abdullah Alperen, Md. Afibuzzaman, Fazlay Rabbi, M. Yusuf Özkaya, Ümit V. Çatalyürek, Hasan Metin Aktulga
:
An Evaluation of Task-Parallel Frameworks for Sparse Solvers on Multicore and Manycore CPU Architectures. ICPP 2021: 30:1-30:11 - [c18]Doga Dikbayir, Balasubramaniam Shanker, Hasan Metin Aktulga:
Optimizing Data Locality and Termination Criterion for t-SNE. IJCNN 2021: 1-10 - 2020
- [j17]Nicolas Michel
, Hasan Metin Aktulga
, Y. Jaganathen:
Toward scalable many-body calculations for nuclear open quantum systems using the Gamow Shell Model. Comput. Phys. Commun. 247 (2020) - [j16]Stephen M. Hughey
, A. Alsnayyan, Hasan Metin Aktulga
, T. Gao, Balasubramaniam Shanker
:
Fast and scalable evaluation of pairwise potentials. Comput. Phys. Commun. 255: 107248 (2020) - [j15]Kurt A. O'Hearn, Abdullah Alperen, Hasan Metin Aktulga
:
Fast Solvers for Charge Distribution Models on Shared Memory Platforms. SIAM J. Sci. Comput. 42(1): C1-C22 (2020) - [c17]Michael P. Lingg, Stephen M. Hughey, Doga Dikbayir, Balasubramaniam Shanker, Hasan Metin Aktulga
:
Exploring Task Parallelism for the Multilevel Fast Multipole Algorithm. HiPC 2020: 41-50 - [c16]Md. Afibuzzaman, Pieter Maris, Taylor L. Groves, Dossay Oryspayev, Brandon Cook, Chao Yang, Hasan Metin Aktulga
:
Evaluation of the Communication Motif for a Distributed Eigensolver using the SST Network Simulation Tool. PMBS@SC 2020: 138-148 - [i5]Michael P. Lingg, Stephen M. Hughey, Hasan Metin Aktulga, Balasubramaniam Shanker:
High Performance Evaluation of Helmholtz Potentials usingthe Multi-Level Fast Multipole Algorithm. CoRR abs/2006.15367 (2020)
2010 – 2019
- 2019
- [j14]Hasan Metin Aktulga
, Chris Knight, Paul K. Coffman, Kurt A. O'Hearn, Tzu-Ray Shan, Wei Jiang:
Optimizing the performance of reactive molecular dynamics simulations for many-core architectures. Int. J. High Perform. Comput. Appl. 33(2) (2019) - [c15]Md. Afibuzzaman, Fazlay Rabbi, M. Yusuf Özkaya, Hasan Metin Aktulga
, Ümit V. Çatalyürek:
DeepSparse: A Task-Parallel Framework for SparseSolvers on Deep Memory Architectures. HiPC 2019: 373-382 - [c14]Mehmet Cagri Kaymak, Hasan Metin Aktulga
, Ron Fox, Sean N. Liddick:
Data Analysis for Atomic Shapes in Nuclear Science. ICCS (2) 2019: 219-233 - [c13]Kurt A. O'Hearn, Abdullah Alperen, Hasan Metin Aktulga
:
Performance optimization of reactive molecular dynamics simulations with dynamic charge distribution models on distributed memory platforms. ICS 2019: 150-159 - [c12]Fazlay Rabbi, Christopher S. Daley
, Hasan Metin Aktulga
, Nicholas J. Wright
:
Evaluation of Directive-Based GPU Programming Models on a Block Eigensolver with Consideration of Large Sparse Matrices. WACCPD@SC 2019: 66-88 - 2018
- [j13]Meiyue Shao
, Hasan Metin Aktulga
, Chao Yang, Esmond G. Ng, Pieter Maris
, James P. Vary:
Accelerating nuclear configuration interaction calculations through a preconditioned block iterative eigensolver. Comput. Phys. Commun. 222: 1-13 (2018) - [j12]Md. Afibuzzaman
, Bastian Schuetrumpf
, Hasan Metin Aktulga
:
Scalable nuclear density functional theory with Sky3D. Comput. Phys. Commun. 223: 34-44 (2018) - [c11]Michael P. Lingg, Stephen M. Hughey
, Hasan Metin Aktulga
:
Optimization of the Spherical Harmonics Transform based Tree Traversals in the Helmholtz FMM Algorithm. ICPP 2018: 91:1-91:11 - 2017
- [j11]Sudhir B. Kylasa, Hasan Metin Aktulga
, Ananth Y. Grama:
Reactive Molecular Dynamics on Massively Parallel Heterogeneous Architectures. IEEE Trans. Parallel Distributed Syst. 28(1): 202-214 (2017) - [j10]Hasan Metin Aktulga
, Md. Afibuzzaman, Samuel Williams
, Aydin Buluç
, Meiyue Shao
, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary:
A High Performance Block Eigensolver for Nuclear Configuration Interaction Calculations. IEEE Trans. Parallel Distributed Syst. 28(6): 1550-1563 (2017) - [i4]Hasan Metin Aktulga, Christopher Knight, Paul K. Coffman, Kurt A. O'Hearn, Tzu-Ray Shan, Wei Jiang:
Optimizing the Performance of Reactive Molecular Dynamics Simulations for Multi-Core Architectures. CoRR abs/1706.07772 (2017) - 2016
- [c10]Suleyman Salin, Murat Manguoglu, Hasan Metin Aktulga:
Learning the Domain of Sparse Matrices. ICMLA 2016: 800-805 - [c9]Kurt A. O'Hearn, Hasan Metin Aktulga:
Towards Fast Scalable Solvers for Charge Equilibration in Molecular Dynamics Applications. ScalA@SC 2016: 9-16 - [i3]Meiyue Shao
, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary:
Accelerating Nuclear Configuration Interaction Calculations through a Preconditioned Block Iterative Eigensolver. CoRR abs/1609.01689 (2016) - 2015
- [j9]Dossay Oryspayev, Hasan Metin Aktulga
, Masha Sosonkina, Pieter Maris, James P. Vary:
Performance analysis of distributed symmetric sparse matrix vector multiplication algorithm for multi-core architectures. Concurr. Comput. Pract. Exp. 27(17): 5019-5036 (2015) - [j8]Mark Dittner
, Julian Müller, Hasan Metin Aktulga
, Bernd Hartke
:
Efficient global optimization of reactive force-field parameters. J. Comput. Chem. 36(20): 1550-1561 (2015) - [r2]Erik Saule, Hasan Metin Aktulga
, Chao Yang, Esmond G. Ng, Ümit V. Çatalyürek:
An Out-of-Core Task-based Middleware for Data-Intensive Scientific Computing. Handbook on Data Centers 2015: 647-667 - 2014
- [j7]Hasan Metin Aktulga
, Chao Yang, Esmond G. Ng, Pieter Maris
, James P. Vary:
Improving the scalability of a symmetric iterative eigensolver for multi-core platforms. Concurr. Comput. Pract. Exp. 26(16): 2631-2651 (2014) - [j6]Sudhir B. Kylasa, Hasan Metin Aktulga
, Ananth Grama:
PuReMD-GPU: A reactive molecular dynamics simulation package for GPUs. J. Comput. Phys. 272: 343-359 (2014) - [j5]Hasan Metin Aktulga, Lin Lin, Christopher Haine, Esmond G. Ng, Chao Yang:
Parallel eigenvalue calculation based on multiple shift-invert Lanczos and contour integral based spectral projection method. Parallel Comput. 40(7): 195-212 (2014) - [j4]Myoungsoo Jung, Ellis Herbert Wilson III, Wonil Choi, John Shalf
, Hasan Metin Aktulga, Chao Yang, Erik Saule
, Ümit V. Çatalyürek
, Mahmut T. Kandemir:
Exploring the future of out-of-core computing with compute-local non-volatile memory. Sci. Program. 22(2): 125-139 (2014) - [c8]Hasan Metin Aktulga
, Aydin Buluç
, Samuel Williams
, Chao Yang:
Optimizing Sparse Matrix-Multiple Vectors Multiplication for Nuclear Configuration Interaction Calculations. IPDPS 2014: 1213-1222 - 2013
- [c7]Myoungsoo Jung, Ellis Herbert Wilson, Wonil Choi, John Shalf
, Hasan Metin Aktulga
, Chao Yang, Erik Saule, Ümit V. Çatalyürek
, Mahmut T. Kandemir:
Exploring the future of out-of-core computing with compute-local non-volatile memory. SC 2013: 75:1-75:11 - 2012
- [j3]Hasan Metin Aktulga
, Joseph C. Fogarty, Sagar A. Pandit, Ananth Grama:
Parallel reactive molecular dynamics: Numerical methods and algorithmic techniques. Parallel Comput. 38(4-5): 245-259 (2012) - [j2]Hasan Metin Aktulga
, Sagar Pandit, Adri C. T. van Duin, Ananth Grama:
Reactive Molecular Dynamics: Numerical Methods and Algorithmic Techniques. SIAM J. Sci. Comput. 34(1) (2012) - [c6]Zheng Zhou, Erik Saule, Hasan Metin Aktulga
, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary, Ümit V. Çatalyürek
:
An Out-of-Core Eigensolver on SSD-equipped Clusters. CLUSTER 2012: 248-256 - [c5]Hasan Metin Aktulga
, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary:
Topology-Aware Mappings for Large-Scale Eigenvalue Problems. Euro-Par 2012: 830-842 - [c4]Zheng Zhou, Erik Saule, Hasan Metin Aktulga, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary, Ümit V. Çatalyürek
:
An Out-of-Core Dataflow Middleware to Reduce the Cost of Large Scale Iterative Solvers. ICPP Workshops 2012: 71-80 - 2011
- [c3]Hasan Metin Aktulga, Chao Yang, Ümit V. Çatalyürek, Pieter Maris, James P. Vary, Esmond G. Ng:
On Reducing I/O Overheads in Large-Scale Invariant Subspace Projections. Euro-Par Workshops (1) 2011: 305-314 - [c2]Hasan Metin Aktulga
, Chao Yang, Esmond G. Ng, Pieter Maris, James P. Vary:
Large-scale parallel null space calculation for nuclear configuration interaction. HPCS 2011: 176-185 - [r1]Ananth Grama, Joseph C. Fogarty, Hasan Metin Aktulga, Sagar Pandit:
N-Body Computational Methods. Encyclopedia of Parallel Computing 2011: 1259-1268 - [i2]Esmond G. Ng, Jason Sarich, Stefan M. Wild, Todd S. Munson, Hasan Metin Aktulga, Chao Yang, Pieter Maris, James P. Vary, Nicolas Schunck, M. G. Bertolli, Markus Kortelainen, Witold Nazarewicz, Thomas Papenbrock, M. V. Stoitsov:
Advancing Nuclear Physics Through TOPS Solvers and Tools. CoRR abs/1110.1708 (2011) - 2010
- [b1]Hasan Metin Aktulga:
Algorithmic and numerical techniques for atomistic modeling. Purdue University, USA, 2010
2000 – 2009
- 2007
- [j1]Hasan Metin Aktulga
, Ioannis Kontoyiannis, Leszek Alex Lyznik, Lukasz Szpankowski, Ananth Grama, Wojciech Szpankowski:
Identifying Statistical Dependence in Genomic Sequences via Mutual Information Estimates. EURASIP J. Bioinform. Syst. Biol. 2007 (2007) - [c1]Hasan Metin Aktulga
, Ioannis Kontoyiannis, Leszek Alex Lyznik, Lukasz Szpankowski, Ananth Y. Grama, Wojciech Szpankowski:
Statistical Dependence in Biological Sequences. ISIT 2007: 2676-2680 - [i1]Hasan Metin Aktulga, Ioannis Kontoyiannis, Leszek Alex Lyznik, Lukasz Szpankowski, Ananth Grama, Wojciech Szpankowski:
Identifying statistical dependence in genomic sequences via mutual information estimates. CoRR abs/0710.5190 (2007)
Coauthor Index
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last updated on 2024-08-16 18:31 CEST by the dblp team
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