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Marta Cascante
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2020 – today
- 2023
- [j23]Pedro de Atauri
, Carles Foguet
, Marta Cascante
:
Control analysis in the identification of key enzymes driving metabolic adaptations: Towards drug target discovery. Biosyst. 231: 104984 (2023) - 2021
- [j22]Pedro de Atauri
, Míriam Tarrado-Castellarnau
, Josep Tarragó-Celada
, Carles Foguet
, Effrosyni Karakitsou
, Josep J. Centelles
, Marta Cascante
:
Integrating systemic and molecular levels to infer key drivers sustaining metabolic adaptations. PLoS Comput. Biol. 17(7) (2021)
2010 – 2019
- 2019
- [j21]Payam Emami Khoonsari, Pablo A. Moreno
, Sven Bergmann, Joachim Burman, Marco Capuccini, Matteo Carone, Marta Cascante
, Pedro de Atauri
, Carles Foguet
, Alejandra N. González-Beltrán, Thomas Hankemeier
, Kenneth Haug
, Sijin He
, Stephanie Herman, David Johnson
, Namrata Kale, Anders Larsson, Steffen Neumann, Kristian Peters
, Luca Pireddu
, Philippe Rocca-Serra, Pierrick Roger, Rico Rueedi, Christoph Ruttkies, Noureddin Sadawi
, Reza M. Salek
, Susanna-Assunta Sansone, Daniel Schober
, Vitaly A. Selivanov, Etienne A. Thévenot
, Michael van Vliet, Gianluigi Zanetti, Christoph Steinbeck
, Kim Kultima
, Ola Spjuth:
Interoperable and scalable data analysis with microservices: applications in metabolomics. Bioinform. 35(19): 3752-3760 (2019) - [j20]Carles Foguet
, Anusha Jayaraman
, Silvia Marin
, Vitaly A. Selivanov, Pablo A. Moreno
, Ramon Messeguer, Pedro de Atauri
, Marta Cascante
:
p13CMFA: Parsimonious 13C metabolic flux analysis. PLoS Comput. Biol. 15(9) (2019) - 2018
- [j19]Igor Marín de Mas
, Esther Aguilar
, Erika Zodda, Cristina Balcells
, Silvia Marin
, Guido Dallmann, Timothy M. Thomson
, Balázs Papp
, Marta Cascante
:
Model-driven discovery of long-chain fatty acid metabolic reprogramming in heterogeneous prostate cancer cells. PLoS Comput. Biol. 14(1) (2018) - 2017
- [j18]Igor Marín de Mas
, Eric Fanchon, Balázs Papp
, Susana G. Kalko
, Josep Roca
, Marta Cascante:
Molecular mechanisms underlying COPD-muscle dysfunction unveiled through a systems medicine approach. Bioinform. 33(1): 95-103 (2017) - [j17]Vitaly A. Selivanov, Adrián Benito, Anibal Miranda, Esther Aguilar
, Ibrahim Halil Polat
, Josep J. Centelles
, Anusha Jayaraman
, Paul W.-N. Lee, Silvia Marin
, Marta Cascante
:
MIDcor, an R-program for deciphering mass interferences in mass spectra of metabolites enriched in stable isotopes. BMC Bioinform. 18(1): 88:1-88:9 (2017) - [i1]Merlijn N. van Rijswijk
, Charlie Beirnaert
, Christophe Caron, Marta Cascante
, Victoria Dominguez Del Angel
, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán
, Thomas Hankemeier, Kenneth Haug
, Jose L. Izquierdo-García
, Rafael C. Jiménez
, Fabien Jourdan, Namrata Kale
, Maria I. Klapa
, Oliver Kohlbacher
, Kairi Koort, Kim Kultima, Gildas Le Corguillé
, Nicholas K. Moschonas
, Steffen Neumann
, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato
, Reza M. Salek
, Susanna-Assunta Sansone
, Venkata P. Satagopam
, Daniel Schober
, Ruth Shimmo, Rachel A. Spicer
, Ola Spjuth
, Etienne A. Thévenot
, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen
, Gianluigi Zanetti, Christoph Steinbeck
:
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - 2016
- [j16]Ákos Tényi, Pedro de Atauri
, David Gomez-Cabrero
, Isaac Cano
, Kim Clarke, Francesco Falciani, Marta Cascante, Josep Roca
, Dieter Maier:
ChainRank, a chain prioritisation method for contextualisation of biological networks. BMC Bioinform. 17: 17 (2016) - [j15]Carles Foguet
, Silvia Marin
, Vitaly A. Selivanov, Eric Fanchon, Wai-Nang Paul Lee
, Joan J. Guinovart, Pedro de Atauri
, Marta Cascante:
HepatoDyn: A Dynamic Model of Hepatocyte Metabolism That Integrates 13C Isotopomer Data. PLoS Comput. Biol. 12(4) (2016) - 2015
- [j14]Michael Binns, Pedro de Atauri
, Anestis Vlysidis, Marta Cascante, Constantinos Theodoropoulos
:
Sampling with poling-based flux balance analysis: optimal versus sub-optimal flux space analysis of Actinobacillus succinogenes. BMC Bioinform. 16: 49:1-49:19 (2015) - 2014
- [j13]Shirley Guzmán, Silvia Marin
, Anibal Miranda, Vitaly A. Selivanov
, Josep J. Centelles
, Romain Harmancey, Fatima Smih, Annie Turkieh
, Yves Durocher, Antonio Zorzano, Philippe Rouet
, Marta Cascante:
13C metabolic flux analysis shows that resistin impairs the metabolic response to insulin in L6E9 myotubes. BMC Syst. Biol. 8: 109 (2014) - 2012
- [j12]Vitaly A. Selivanov
, Marta Cascante, Mark Friedman, Mark F. Schumaker, Massimo Trucco, Tatyana V. Votyakova:
Multistationary and Oscillatory Modes of Free Radicals Generation by the Mitochondrial Respiratory Chain Revealed by a Bifurcation Analysis. PLoS Comput. Biol. 8(9) (2012) - 2011
- [j11]Jon Pey, Constantinos Theodoropoulos
, Alberto Rezola
, Angel Rubio
, Marta Cascante
, Francisco J. Planes:
Do elementary flux modes combine linearly at the "atomic" level? Integrating tracer-based metabolomics data and elementary flux modes. Biosyst. 105(2): 140-146 (2011) - [j10]Dieter Maier, Wenzel Kalus, Martin Wolff, Susana G. Kalko
, Josep Roca
, Igor Marín de Mas
, Nil Turan, Marta Cascante, Francesco Falciani, Miguel Hernandez, Jordi Villà-Freixa
, Sascha Losko
:
Knowledge management for systems biology a general and visually driven framework applied to translational medicine. BMC Syst. Biol. 5: 38 (2011) - [j9]Igor Marín de Mas
, Vitaly A. Selivanov
, Silvia Marin
, Josep Roca
, Matej Oresic
, Loranne Agius
, Marta Cascante:
Compartmentation of glycogen metabolism revealed from 13C isotopologue distributions. BMC Syst. Biol. 5: 175 (2011) - [j8]Vitaly A. Selivanov
, Tatyana V. Votyakova, Violetta N. Pivtoraiko, Jennifer Zeak, Tatiana Sukhomlin, Massimo Trucco, Josep Roca
, Marta Cascante:
Reactive Oxygen Species Production by Forward and Reverse Electron Fluxes in the Mitochondrial Respiratory Chain. PLoS Comput. Biol. 7(3) (2011) - [j7]Nil Turan, Susana G. Kalko
, Anna Stincone, Kim Clarke, Ayesha Sabah, Katherine Howlett, S. John Curnow
, Diego A. Rodriguez
, Marta Cascante
, Laura O'Neill, Stuart Egginton
, Josep Roca
, Francesco Falciani:
A Systems Biology Approach Identifies Molecular Networks Defining Skeletal Muscle Abnormalities in Chronic Obstructive Pulmonary Disease. PLoS Comput. Biol. 7(9) (2011) - 2010
- [j6]Vitaly A. Selivanov
, Pedro Vizán
, Faustino Mollinedo, Teresa W.-M. Fan, Paul W.-N. Lee, Marta Cascante
:
Edelfosine-induced metabolic changes in cancer cells that precede the overproduction of reactive oxygen species and apoptosis. BMC Syst. Biol. 4: 135 (2010)
2000 – 2009
- 2009
- [j5]Vitaly A. Selivanov
, Tatyana V. Votyakova, Jennifer Zeak, Massimo Trucco, Josep Roca
, Marta Cascante:
Bistability of Mitochondrial Respiration Underlies Paradoxical Reactive Oxygen Species Generation Induced by Anoxia. PLoS Comput. Biol. 5(12) (2009) - 2007
- [j4]Julio Vera
, Raul Curto
, Marta Cascante, Néstor V. Torres:
Detection of potential enzyme targets by metabolic modelling and optimization: Application to a simple enzymopathy. Bioinform. 23(17): 2281-2289 (2007) - 2006
- [j3]Vitaly A. Selivanov
, Silvia Marin
, Paul W.-N. Lee, Marta Cascante
:
Software for dynamic analysis of tracer-based metabolomic data: estimation of metabolic fluxes and their statistical analysis. Bioinform. 22(22): 2806-2812 (2006) - 2005
- [j2]Vitaly A. Selivanov
, Ludmilla E. Meshalkina, Olga N. Solovjeva, Philip W. Kuchel
, Antonio Ramos-Montoya, German A. Kochetov, Paul W.-N. Lee, Marta Cascante
:
Rapid simulation and analysis of isotopomer distributions using constraints based on enzyme mechanisms: an example from HT29 cancer cells. Bioinform. 21(17): 3558-3564 (2005) - 2004
- [j1]Vitaly A. Selivanov
, Joaquim Puigjaner, Antonio Sillero, Josep J. Centelles
, Antonio Ramos-Montoya, Paul W.-N. Lee, Marta Cascante
:
An optimized algorithm for flux estimation from isotopomer distribution in glucose metabolites. Bioinform. 20(18): 3387-3397 (2004)
Coauthor Index
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last updated on 2024-04-25 05:37 CEST by the dblp team
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