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Journal Articles
- 2022
[j12]Milan A. Clasen
, Louise U. Kurt, Marlon D. M. Santos, Diogo B. Lima, Fan Liu, Fábio C. Gozzo, Valmir C. Barbosa, Paulo C. Carvalho:
Increasing confidence in proteomic spectral deconvolution through mass defect. Bioinform. 38(22): 5119-5120 (2022)- 2021
- [j11]Louise U. Kurt, Milan A. Clasen, Marlon D. M. Santos, Eduardo S. B. Lyra, Luana O. Santos, Carlos H. I. Ramos, Diogo B. Lima, Fábio C. Gozzo, Paulo C. Carvalho:
Characterizing protein conformers by cross-linking mass spectrometry and pattern recognition. Bioinform. 37(18): 3035-3037 (2021) - 2019
- [j10]Allan J. R. Ferrari, Milan A. Clasen, Louise U. Kurt, Paulo C. Carvalho, Fábio C. Gozzo, Leandro Martínez:
TopoLink: evaluation of structural models using chemical crosslinking distance constraints. Bioinform. 35(17): 3169-3170 (2019) - [j9]Diogo B. Lima, André Ramos Fernandes Da Silva, Mathieu Dupré, Marlon D. M. Santos, Milan A. Clasen, Louise U. Kurt, Priscila F. Aquino, Valmir C. Barbosa, Paulo C. Carvalho, Julia Chamot-Rooke:
Top-Down Garbage Collector: a tool for selecting high-quality top-down proteomics mass spectra. Bioinform. 35(18): 3489-3490 (2019) - 2017
- [j8]André Ramos Fernandes Da Silva, Diogo B. Lima, Alejandro Leyva, Rosario Durán, Carlos Batthyany, Priscila F. Aquino, Juliana C. Leal, Jimmy E. Rodriguez, Gilberto B. Domont, Marlon D. M. Santos, Julia Chamot-Rooke, Valmir C. Barbosa, Paulo C. Carvalho:
DiagnoProt: a tool for discovery of new molecules by mass spectrometry. Bioinform. 33(12): 1883-1885 (2017) - 2013
- [j7]Diogo B. Lima, Yasset Pérez-Riverol, Fabio C. S. Nogueira, Gilberto B. Domont, Jesus Noda, Felipe da Veiga Leprevost, Vladimir Besada, Felipe M. G. França, Valmir Carneiro Barbosa, Aniel Sánchez, Paulo C. Carvalho:
Effectively addressing complex proteomic search spaces with peptide spectrum matching. Bioinform. 29(10): 1343-1344 (2013) - 2012
- [j6]Paulo C. Carvalho, John R. Yates III, Valmir Carneiro Barbosa:
Improving the TFold test for differential shotgun proteomics. Bioinform. 28(12): 1652-1654 (2012) - 2011
- [j5]Paulo C. Carvalho, Juliana S. G. Fischer, Jonas Perales, John R. Yates III, Valmir Carneiro Barbosa, Elias Bareinboim:
Analyzing marginal cases in differential shotgun proteomics. Bioinform. 27(2): 275-276 (2011) - 2010
- [j4]Paulo C. Carvalho, Xuemei Han, Tao Xu, Daniel Cociorva, Maria da Gloria Carvalho, Valmir Carneiro Barbosa, John R. Yates III:
XDIA: improving on the label-free data-independent analysis. Bioinform. 26(6): 847-848 (2010) - 2009
- [j3]Paulo C. Carvalho, Tao Xu, Xuemei Han, Daniel Cociorva, Valmir Carneiro Barbosa, John R. Yates III:
YADA: a tool for taking the most out of high-resolution spectra. Bioinform. 25(20): 2734-2736 (2009) - 2008
- [j2]Paulo C. Carvalho, Juliana S. G. Fischer, Emily I. Chen, John R. Yates III, Valmir Carneiro Barbosa:
PatternLab for proteomics: a tool for differential shotgun proteomics. BMC Bioinform. 9 (2008) - 2005
- [j1]Paulo C. Carvalho, Rafael V. Glória, Antonio Basílio de Miranda, Wim M. Degrave:
Squid - a simple bioinformatics grid. BMC Bioinform. 6: 197 (2005)
Coauthor Index
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