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Dong Xu 0002
Person information
- affiliation: University of Missouri, Department of Computer Science / C.S. Bond Life Sciences Center, Columbia, MO, USA
- affiliation (former): Jilin University, College of Computer Science and Technology, Changchun, China
- affiliation (former): Oak Ridge National Laboratory, Life Sciences Division, Protein Informatics Group, Oak Ridge, TN, USA
- affiliation (PhD 1995): University of Illinois at Urbana-Champaign, IL, USA
Other persons with the same name
- Dong Xu — disambiguation page
- Dong Xu 0001
— University of Hong Kong, Department of Computer Science, Hong Kong (and 4 more)
- Dong Xu 0003 — Shanghai Normal University, Shanghai, China
- Dong Xu 0004
— Tsinghua University, Department of Precision Instrument, Beijing, China
- Dong Xu 0005
— Beihang University, School of Automation Science and Electrical Engineering, Beijing, China (and 1 more)
- Dong Xu 0006
— Cancer Hospital of the University of Chinese Academy of Sciences (Zhejiang Cancer Hospital), Hangzhou, China (and 1 more)
- Dong Xu 0007 — University of Arizona, Department of Systems and Industrial Engineering, Tucson, AZ, USA
- Dong Xu 0008 — Sanford-Burnham Medical Research Institute, San Diego, CA, USA (and 2 more)
- Dong Xu 0009 — East China Normal University, School of Geographic Sciences, Key Laboratory of Geographic Information Science, Shanghai, China
- Dong Xu 0010 — Harbin Engineering University, College of Computer Science and Technology, Harbin, China
- Dong Xu 0011
— Wuhan University, State Key Laboratory of Information Engineering in Surveying Mapping and Remote Sensing, Wuhan, China
- Dong Xu 0012 — University of Duisburg-Essen, Department of Communication Technology, Duisburg, Germany
- Dong Xu 0013
— University of Science and Technology Beijing, National Engineering Research Center for Advanced Rolling and Intelligent Manufacturing, Beijing, China (and 1 more)
- Dong Xu 0014
— Anhui University of Technology, Engineering Research Institute, Ma'anshan, China
- Dong Xu 0015
— ZTE Corporation, Shanghai, China
- Dong Xu 0016
— Chang Gung University, Taoyuan, Taiwan
- Dong Xu 0017
— Beijing Normal University, Faculty of Geographical Science, State Key Laboratory of Remote Sensing Science, Beijing, China (and 2 more)
- Dong Xu 0018
— Tongji University, School of Mechanical Engineering, Tongji, China (and 1 more)
- Dong Xu 0019
— Northeastern University, College of Information Science and Engineering, Shenyang, China
- Dong Xu 0020
— East China Jiaotong University, Department of Internet of Things, NanChang, China
- Dong Xu 0021
— University of Virginia, Charlottesville, VA, USA
- Dong Xu 0022
— Idaho State University, College of Pharmacy, Department of Biomedical and Pharmaceutical Sciences, Meridian, ID, USA
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2020 – today
- 2024
- [j100]Muhammad Hassan
, Yan Wang
, Di Wang
, Wei Pang
, Daixi Li, You Zhou
, Dong Xu
, Sami Ur Rahman, Amin ur Rahman, Ahmed Fateh Ameen
, Peiwu Qin
:
Deep learning model for human-intuitive shoeprint reconstruction. Expert Syst. Appl. 249: 123704 (2024) - [j99]Xiaosong Han, Mengchen Cao, Dong Xu, Xiaoyue Feng, Yanchun Liang, Xiaoduo Lang, Renchu Guan:
SEOE: an option graph based semantically embedding method for prenatal depression detection. Frontiers Comput. Sci. 18(6): 186911 (2024) - [j98]Gang-Qing Hu
, Li Liu
, Dong Xu
:
On the Responsible Use of Chatbots in Bioinformatics. Genom. Proteom. Bioinform. 22(1) (2024) - [j97]Xuan Wu
, Di Wang
, Huanhuan Chen
, Lele Yan, Yubin Xiao
, Chunyan Miao
, Hongwei Ge
, Dong Xu
, Yanchun Liang
, Kangping Wang, Chunguo Wu, You Zhou:
Neural Architecture Search for Text Classification With Limited Computing Resources Using Efficient Cartesian Genetic Programming. IEEE Trans. Evol. Comput. 28(3): 638-652 (2024) - [j96]Fei He, Kai Liu, Zhiyuan Yang, Yibo Chen, Richard D. Hammer, Dong Xu, Mihail Popescu:
pathCLIP: Detection of Genes and Gene Relations From Biological Pathway Figures Through Image-Text Contrastive Learning. IEEE J. Biomed. Health Informatics 28(8): 5007-5019 (2024) - [c75]Shuai Zeng
, Duolin Wang
, Lei Jiang, Dong Xu
:
Prompt-Based Learning on Large Protein Language Models Improves Signal Peptide Prediction. RECOMB 2024: 400-405 - 2023
- [j95]Zhengzhong Qiu, Wei Bi, Dong Xu, Hua Guo, Hongwei Ge, Yanchun Liang, Heow Pueh Lee
, Chunguo Wu
:
Efficient Self-learning Evolutionary Neural Architecture Search. Appl. Soft Comput. 146: 110671 (2023) - [j94]Zhenhao Wang
, Rui Xu, Tingyuan Nie, Dong Xu:
Semi-supervised active learning hypothesis verification for improved geometric expression in three-dimensional object recognition. Eng. Appl. Artif. Intell. 120: 105956 (2023) - [j93]Jihong Ouyang, Dong Mao, Zeqi Guo, Siguang Liu
, Dong Xu, Wenting Wang:
Contrastive self-supervised learning for diabetic retinopathy early detection. Medical Biol. Eng. Comput. 61(9): 2441-2452 (2023) - [j92]Yuexu Jiang, Lei Jiang, Chopparapu Sai Akhil, Duolin Wang, Ziyang Zhang, Weinan Zhang, Dong Xu
:
MULocDeep web service for protein localization prediction and visualization at subcellular and suborganellar levels. Nucleic Acids Res. 51(W1): 343-349 (2023) - [j91]Duolin Wang, Fei He, Yang Yu, Dong Xu
:
Meta-learning for T cell receptor binding specificity and beyond. Nat. Mac. Intell. 5(4): 337-339 (2023) - [j90]Jianing Qiu
, Lin Li
, Jiankai Sun
, Jiachuan Peng
, Peilun Shi, Ruiyang Zhang, Yinzhao Dong, Kyle Lam
, Frank P.-W. Lo
, Bo Xiao
, Wu Yuan
, Ningli Wang, Dong Xu
, Benny P. L. Lo
:
Large AI Models in Health Informatics: Applications, Challenges, and the Future. IEEE J. Biomed. Health Informatics 27(12): 6074-6087 (2023) - [j89]Yuanxun Zhang, Prasad Calyam
, Trupti Joshi
, Satish S. Nair
, Dong Xu
:
Domain-Specific Topic Model for Knowledge Discovery in Computational and Data-Intensive Scientific Communities. IEEE Trans. Knowl. Data Eng. 35(2): 1402-1420 (2023) - [i7]Jianing Qiu, Lin Li, Jiankai Sun, Jiachuan Peng, Peilun Shi, Ruiyang Zhang, Yinzhao Dong, Kyle Lam, Frank P.-W. Lo, Bo Xiao, Wu Yuan
, Dong Xu, Benny Lo:
Large AI Models in Health Informatics: Applications, Challenges, and the Future. CoRR abs/2303.11568 (2023) - [i6]Yubin Xiao, Di Wang, Huanhuan Chen, Boyang Li, Wei Pang, Xuan Wu, Hao Li, Dong Xu, Yanchun Liang, You Zhou:
Reinforcement Learning-based Non-Autoregressive Solver for Traveling Salesman Problems. CoRR abs/2308.00560 (2023) - [i5]Fei He, Zhiyuan Yang, Mingyue Gao, Biplab Poudel, Newgin Sam Ebin Sam Dhas, Rajan Gyawali, Ashwin Dhakal, Jianlin Cheng, Dong Xu:
Adapting Segment Anything Model (SAM) through Prompt-based Learning for Enhanced Protein Identification in Cryo-EM Micrographs. CoRR abs/2311.16140 (2023) - 2022
- [j88]Shuangquan Zhang, Anjun Ma
, Jing Zhao, Dong Xu, Qin Ma
, Yan Wang
:
Assessing deep learning methods in cis-regulatory motif finding based on genomic sequencing data. Briefings Bioinform. 23(1) (2022) - [j87]Renchu Guan, Haoyu Pang, Yanchun Liang, Zhongjun Shao, Xin Gao
, Dong Xu, Xiaoyue Feng:
Discovering trends and hotspots of biosafety and biosecurity research via machine learning. Briefings Bioinform. 23(5) (2022) - [j86]Haocheng Gu, Hao Cheng, Anjun Ma
, Yang Li
, Juexin Wang
, Dong Xu
, Qin Ma
:
scGNN 2.0: a graph neural network tool for imputation and clustering of single-cell RNA-Seq data. Bioinform. 38(23): 5322-5325 (2022) - [j85]Muhammad Hassan
, Yan Wang, Di Wang, Wei Pang
, Kangping Wang, Daixi Li, You Zhou, Dong Xu:
Restorable-inpainting: A novel deep learning approach for shoeprint restoration. Inf. Sci. 600: 22-42 (2022) - [j84]Muhammad Hassan
, Yan Wang, Wei Pang
, Di Wang, Daixi Li, You Zhou, Dong Xu:
IPAS-Net: A deep-learning model for generating high-fidelity shoeprints from low-quality images with no natural references. J. King Saud Univ. Comput. Inf. Sci. 34(6 Part A): 2743-2757 (2022) - [j83]Tianyu Cui, Yiying Dou, Puwen Tan, Zhen Ni, Tianyuan Liu, Duolin Wang, Yan Huang, Kaican Cai, Xiaoyang Zhao, Dong Xu
, Hao Lin
, Dong Wang
:
RNALocate v2.0: an updated resource for RNA subcellular localization with increased coverage and annotation. Nucleic Acids Res. 50(D1): 333-339 (2022) - [j82]Yuning Yang
, Jiawen Yu, Zhe Liu
, Xi Wang, Han Wang
, Zhiqiang Ma, Dong Xu
:
An Improved Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 295-304 (2022) - [c74]Han Wang, Hangxu Zhu, Wenhao Li, Ming Liu, Li Zhang, Dong Xu:
Predicting Compound-Protein Interaction by Deepening the Systemic Background via Molecular Network Feature Embedding. BIBM 2022: 346-353 - [c73]Clement Essien
, Fei He, Mark Hannink, Mihail Popescu, Dong Xu:
Extraction of Gene Regulatory Relation Using BioBERT. BIBM 2022: 3351-3355 - [c72]Stuart Aldrich, Micheal Olaolu Arowolo, Fei He, Mihail Popescu, Dong Xu:
Comprehensive Assessment of OCR Tools for Gene Name Recognition in Biological Pathway Figures. BIBM 2022: 3574-3579 - [c71]Yibo Chen, Dong Xu, Mihail Popescu:
Integration of Gene Regulatory Pathways Found in the Literature in a Graph Database. BIBM 2022: 3791-3793 - [c70]Lei Jiang, Yuexu Jiang, Cankun Wang
, Clement Essien
, Juexin Wang, Anjun Ma
, Qin Ma, Dong Xu:
Machine learning development environment for single-cell sequencing data analyses. BIBM 2022: 3824-3826 - [c69]Negin Manshour, Yang Yu, Wenyuan Qin, Fei He, Duolin Wang, Dong Xu:
Evaluating template-based and template-free protein-peptide complex structure prediction using AlphaFold2. BIBM 2022: 3856 - [c68]Junlin Wang, Wenbo Wang, Yi Shang, Dong Xu:
New Heuristic Methods for Protein Model Quality Assessment via Two-Stage Machine Learning and Hierarchical Ensemble. CogMI 2022: 84-90 - 2021
- [j81]Komal Vekaria, Prasad Calyam
, Sai Swathi Sivarathri, Songjie Wang, Yuanxun Zhang, Ashish Pandey, Cong Chen, Dong Xu, Trupti Joshi, Satish S. Nair:
Recommender-as-a-service with chatbot guided domain-science knowledge discovery in a science gateway. Concurr. Comput. Pract. Exp. 33(19) (2021) - [j80]Rui Gao, Shoufeng Li, Xiaohu Shi
, Yanchun Liang, Dong Xu
:
Overlapping Community Detection Based on Membership Degree Propagation. Entropy 23(1): 15 (2021) - [j79]Ye Han, Fei He, Yongbing Chen, Wenyuan Qin, Helong Yu, Dong Xu:
Quality Assessment of Protein Docking Models Based on Graph Neural Network. Frontiers Bioinform. 1 (2021) - [j78]Shuai Zeng
, Ziting Mao, Yijie Ren, Duolin Wang, Dong Xu, Trupti Joshi
:
G2PDeep: a web-based deep-learning framework for quantitative phenotype prediction and discovery of genomic markers. Nucleic Acids Res. 49(Webserver-Issue): 228-236 (2021) - [j77]Chao Fang
, Dong Xu
, Jing Su, Jonathan R. Dry
, Bolan Linghu
:
DeePaN: deep patient graph convolutional network integrating clinico-genomic evidence to stratify lung cancers for immunotherapy. npj Digit. Medicine 4 (2021) - [j76]Matthew Dickinson, Saptarshi Debroy
, Prasad Calyam
, Samaikya Valluripally
, Yuanxun Zhang, Ronny Bazan Antequera, Trupti Joshi, Tommi A. White, Dong Xu
:
Multi-Cloud Performance and Security Driven Federated Workflow Management. IEEE Trans. Cloud Comput. 9(1): 240-257 (2021) - [c67]Fei He, Joshua Thompson, Ziting Mao, Yijie Ren, Yulia I. Nussbaum, Olha Kholod, Dmitriy Shin, Mark Hannink, Mihail Popescu, Dong Xu:
Identifying Genes and Their Interactions from Pathway Figures and Text in Biomedical Articles. BIBM 2021: 398-405 - [c66]Xiaosong Han, Xiaoran Li, Yanchun Liang, Xinghao Wang, Dong Xu, Renchu Guan:
Acupuncture and Tuina Knowledge Graph for Ancient Literature of Traditional Chinese Medicine. BIBM 2021: 674-677 - [c65]Joshua Thompson, Haoyu Dong, Kai Liu, Fei He, Mihail Popescu, Dong Xu:
A Rule-Based Approach for Generating Synthetic Biological Pathways. CIBB 2021: 105-116 - [c64]Yijie Ren, Fei He, Jing Qu, Yifan Li, Joshua Thompson, Mark Hannink, Mihail Popescu, Dong Xu:
Text Mining Enhancements for Image Recognition of Gene Names and Gene Relations. CIBB 2021: 132-142 - 2020
- [j75]Yuexu Jiang, Yanchun Liang, Duolin Wang, Dong Xu
, Trupti Joshi:
A dynamic programing approach to integrate gene expression data and network information for pathway model generation. Bioinform. 36(1): 169-176 (2020) - [j74]Chao Fang
, Zhaoyu Li, Dong Xu
, Yi Shang:
MUFold-SSW: a new web server for predicting protein secondary structures, torsion angles and turns. Bioinform. 36(4): 1293-1295 (2020) - [j73]Bowen Tang, Skyler T. Kramer, Meijuan Fang, Yingkun Qiu, Zhen Wu, Dong Xu
:
A self-attention based message passing neural network for predicting molecular lipophilicity and aqueous solubility. J. Cheminformatics 12(1): 15 (2020) - [j72]Duolin Wang, Dongpeng Liu
, Jiakang Yuchi, Fei He, Yuexu Jiang, Siteng Cai, Jingyi Li, Dong Xu
:
MusiteDeep: a deep-learning based webserver for protein post-translational modification site prediction and visualization. Nucleic Acids Res. 48(Webserver-Issue): W140-W146 (2020) - [j71]Wenbo Wang
, Junlin Wang, Dong Xu
, Yi Shang
:
Two New Heuristic Methods for Protein Model Quality Assessment. IEEE ACM Trans. Comput. Biol. Bioinform. 17(4): 1430-1439 (2020) - [j70]Ming Liu
, Zhiqian Zhou
, Penghui Shang, Dong Xu
:
Fuzzified Image Enhancement for Deep Learning in Iris Recognition. IEEE Trans. Fuzzy Syst. 28(1): 92-99 (2020) - [i4]Muhammad Hassan, Yan Wang, Di Wang, Daixi Li, Yanchun Liang, You Zhou, Dong Xu:
Deep Learning Analysis and Age Prediction from Shoeprints. CoRR abs/2011.03794 (2020)
2010 – 2019
- 2019
- [j69]Duolin Wang, Yanchun Liang, Dong Xu:
Capsule network for protein post-translational modification site prediction. Bioinform. 35(14): 2386-2394 (2019) - [j68]Liu Yang, Dong Xu:
Sliding mode control with PI-based saturation for nano-positioning. Int. J. Wirel. Mob. Comput. 16(3): 204-210 (2019) - [j67]Wenbo Wang
, Zhaoyu Li, Junlin Wang, Dong Xu, Yi Shang
:
PSICA: a fast and accurate web service for protein model quality analysis. Nucleic Acids Res. 47(Webserver-Issue): W443-W450 (2019) - [j66]Son P. Nguyen
, Zhaoyu Li
, Dong Xu
, Yi Shang
:
New Deep Learning Methods for Protein Loop Modeling. IEEE ACM Trans. Comput. Biol. Bioinform. 16(2): 596-606 (2019) - [j65]Chao Fang
, Yi Shang
, Dong Xu
:
Prediction of Protein Backbone Torsion Angles Using Deep Residual Inception Neural Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 16(3): 1020-1028 (2019) - [c63]Yulia Innokenteva, Olha Kholod, Fei He, Duolin Wang, Richard D. Hammer, Dong Xu, Dmitriy Shin:
An Informatics Framework for Knowledge Representation and Reconciliation of Disease Pathways. AMIA 2019 - [c62]Fei He, Duolin Wang, Yulia Innokenteva, Olha Kholod
, Dmitriy Shin, Dong Xu:
Extracting Molecular Entities and Their Interactions from Pathway Figures Based on Deep Learning. BCB 2019: 397-404 - [c61]Han Wang
, Yuning Yang, Jiawen Yu, Xi Wang, Dawei Zhao, Dong Xu, Pingping Sun:
DMCTOP: Topology Prediction of Alpha-Helical Transmembrane Protein Based on Deep Multi-Scale Convolutional Neural Network. BIBM 2019: 36-43 - [c60]Fei He, Rui Wang, Yanxin Gao, Duolin Wang, Yang Yu, Dong Xu, Xiaowei Zhao:
Protein Ubiquitylation and Sumoylation Site Prediction Based on Ensemble and Transfer Learning. BIBM 2019: 117-123 - [c59]Fei He, Duolin Wang, Yulia Innokenteva, Olha Kholod, Dmitriy Shin, Dong Xu:
Extracting Molecular Entities and Their Interactions from Pathway Figures Based on Deep Learning. BIBM 2019: 1191-1193 - [c58]Clement Essien
, Duolin Wang
, Dong Xu:
Capsule Network for Predicting Zinc Binding Sites in Metalloproteins. BIBM 2019: 2337-2341 - [c57]Xue Gu, Ziyao Meng, Yanchun Liang, Dong Xu, Han Huang, Xiaosong Han
, Chunguo Wu:
ESAE: Evolutionary Strategy-Based Architecture Evolution. BIC-TA (1) 2019: 193-208 - [c56]Yuexu Jiang, Duolin Wang, Dong Xu:
DeepDom: Predicting protein domain boundary from sequence alone using stacked bidirectional. PSB 2019: 66-75 - [c55]Pericles S. Giannaris, Cynthia Tang, Olha Kholod, Steve Hanson, Chi-Ren Shyu, Richard D. Hammer, Dong Xu, Dmitriy Shin:
Modeling of Contextual Information in Knowledge Graphs of Diagnostic Reports. SWH@ISWC 2019: 20-29 - [i3]Ming Liu, Dongpeng Liu, Guangyu Sun, Yi Zhao, Duolin Wang, Fangxing Liu, Xiang Fang, Qing He, Dong Xu:
Detection of Malfunctioning Smart Electricity Meter. CoRR abs/1907.11377 (2019) - 2018
- [j64]Juexin Wang, Robert Sheridan, Selçuk Onur Sümer, Nikolaus Schultz, Dong Xu, Jianjiong Gao
:
G2S: a web-service for annotating genomic variants on 3D protein structures. Bioinform. 34(11): 1949-1950 (2018) - [j63]R. Shyama Prasad Rao
, Ning Zhang
, Dong Xu, Ian Max Møller:
CarbonylDB: a curated data-resource of protein carbonylation sites. Bioinform. 34(14): 2518-2520 (2018) - [j62]Donghui Wang, Yanchun Liang, Dong Xu, Xiaoyue Feng, Renchu Guan
:
A content-based recommender system for computer science publications. Knowl. Based Syst. 157: 1-9 (2018) - [j61]Saad M. Khan
, Jason E. Denney, Michael X. Wang, Dong Xu:
Whole-exome sequencing and microRNA profiling reveal PI3K/AKT pathway's involvement in juvenile myelomonocytic leukemia. Quant. Biol. 6(1): 85-97 (2018) - [j60]Ronny Bazan Antequera, Prasad Calyam
, Saptarshi Debroy, Longhai Cui, Sripriya Seetharam, Matthew Dickinson, Trupti Joshi, Dong Xu
, Tsegereda Beyene:
ADON: Application-Driven Overlay Network-as-a-Service for Data-Intensive Science. IEEE Trans. Cloud Comput. 6(3): 640-655 (2018) - [c54]Yuexu Jiang, Duolin Wang, Dong Xu, Trupti Joshi:
Integrating Gene Expression Data and Pathway Knowledge for In Silico Hypothesis Generation with IMPRes. BIBM 2018: 102-107 - [c53]Shuai Zeng, Zhen Lyu, Siva Ratna Kumari Narisetti
, Dong Xu, Trupti Joshi:
Knowledge Base Commons (KBCommons) v1.0: A multi OMICS' web-based data integration framework for biological discoveries. BIBM 2018: 589-594 - [c52]Sadia Akter, Dong Xu, Susan C. Nagel, Trupti Joshi:
A Data Mining Approach for Biomarker Discovery Using Transcriptomics in Endometriosis. BIBM 2018: 969-972 - [c51]Yuanxun Zhang, Prasad Calyam, Trupti Joshi, Satish S. Nair, Dong Xu:
Domain-specific Topic Model for Knowledge Discovery through Conversational Agents in Data Intensive Scientific Communities. IEEE BigData 2018: 4886-4895 - 2017
- [j59]Jianjiong Gao
, Andreas Prlic
, Chunxiao Bi, Wolfgang Bluhm, Dimitris Dimitropoulos, Dong Xu, Philip E. Bourne, Peter W. Rose
:
BioJava-ModFinder: identification of protein modifications in 3D structures from the Protein Data Bank. Bioinform. 33(13): 2047-2049 (2017) - [j58]Duolin Wang, Shuai Zeng, Chunhui Xu, Wangren Qiu, Yanchun Liang, Trupti Joshi, Dong Xu:
MusiteDeep: a deep-learning framework for general and kinase-specific phosphorylation site prediction. Bioinform. 33(24): 3909-3916 (2017) - [j57]Xiaoyue Feng
, Yanchun Liang, Xiaohu Shi, Dong Xu, Xu Wang, Renchu Guan
:
Overfitting Reduction of Text Classification Based on AdaBELM. Entropy 19(7): 330 (2017) - [j56]Li Zhang, Han Wang
, Lun Yan, Lingtao Su, Dong Xu:
OMPcontact: An Outer Membrane Protein Inter-Barrel Residue Contact Prediction Method. J. Comput. Biol. 24(3): 217-228 (2017) - [c50]Fei He, Lingling Bao, Rui Wang, Jiagen Li, Dong Xu, Xiaowei Zhao:
A multimodal deep architecture for large-scale protein ubiquitylation site prediction. BIBM 2017: 108-113 - [c49]Yuexu Jiang, Yanchun Liang, Duolin Wang, Dong Xu, Trupti Joshi:
IMPRes: Integrative MultiOmics pathway resolution algorithm and tool. BIBM 2017: 2260 - [c48]Saad M. Khan, Gavin C. Conant
, Dong Xu:
Effects of evolutionary pressure on histone modifications. BIBM 2017: 2267 - [c47]Chunhui Xu, Wangren Qiu, Xuan Xiao, Dong Xu:
Computational prediction of ubiquitination protein using evolutionary profiles and functional domains. BIBM 2017: 2296 - [c46]Penghui Shang, Duolin Wang, Dongpeng Liu
, Dong Xu:
A deep-learning framework for amidation site prediction. BIBM 2017: 2302 - [c45]Lingtao Su, Dong Xu, Guixia Liu:
A new method for disease-related gene prioritization. BIBM 2017: 2315 - [c44]Juexin Wang, Zhen Lyu, Shakhawat Hossain, Gary Stacey, Dong Xu, Trupti Joshi:
SoyTSN: A web-based prediction tool for soybean tissue specific network within SoyKB. BIBM 2017: 2326 - [c43]Chao Fang
, Yi Shang, Dong Xu:
A New Deep Neighbor Residual Network for Protein Secondary Structure Prediction. ICTAI 2017: 66-71 - [c42]Zhaoyu Li, Son P. Nguyen, Dong Xu, Yi Shang:
Protein Loop Modeling Using Deep Generative Adversarial Network. ICTAI 2017: 1085-1091 - [i2]Chao Fang, Yi Shang, Dong Xu:
MUFold-SS: Protein Secondary Structure Prediction Using Deep Inception-Inside-Inception Networks. CoRR abs/1709.06165 (2017) - 2016
- [j55]Chao Wang, Haicang Zhang, Wei-Mou Zheng, Dong Xu, Jianwei Zhu, Bing Wang, Kang Ning
, Shiwei Sun, Shuai Cheng Li
, Dongbo Bu:
FALCON@home: a high-throughput protein structure prediction server based on remote homologue recognition. Bioinform. 32(3): 462-464 (2016) - [j54]Yang Liu, Saad M. Khan
, Juexin Wang, Mats Rynge
, Yuanxun Zhang, Shuai Zeng, Shiyuan Chen, João V. Maldonado dos Santos, Babu Valliyodan
, Prasad Calyam, Nirav C. Merchant
, Henry T. Nguyen, Dong Xu, Trupti Joshi
:
PGen: large-scale genomic variations analysis workflow and browser in SoyKB. BMC Bioinform. 17(S-13): 337 (2016) - [j53]Hao Zhang
, Yanpu Li, Yuanning Liu, Haiming Liu
, Hongyu Wang, Wen Jin, Yanmei Zhang, Chao Zhang
, Dong Xu:
Role of plant MicroRNA in cross-species regulatory networks of humans. BMC Syst. Biol. 10: 60 (2016) - [j52]Hongbo Li
, Yanchun Liang, Ning Zhang
, Jinsong Guo, Dong Xu, Zhanshan Li:
Improving degree-based variable ordering heuristics for solving constraint satisfaction problems. J. Heuristics 22(2): 125-145 (2016) - [c41]Matthew Dickinson, Saptarshi Debroy, Prasad Calyam, Samaikya Valluripally, Yuanxun Zhang, Trupti Joshi, Dong Xu:
End-to-End Security Formalization and Alignment for Federated Workflow Management. CLOUD 2016: 59-67 - [c40]Zainab Al-Taie, Nattaphon Thanintorn, Ilker Ersoy, Richard D. Hammer, Dong Xu, Trupti Joshi, Dmitriy Shin:
Complexity Reduction and Visualization of RDF Knowledge Networks for Precision medicine. AMIA 2016 - [c39]Guitao Cao, Jie Ding, Ye Duan, Liping Tu, Jiatuo Xu, Dong Xu:
Classification of tongue images based on doublet and color space dictionary. BIBM 2016: 1170-1175 - [c38]Dan Meng, Guitao Cao, Ye Duan, Minghua Zhu, Liping Tu, Jiatuo Xu, Dong Xu:
A deep tongue image features analysis model for medical application. BIBM 2016: 1918-1922 - [c37]Nattaphon Thanintorn, Juexin Wang, Ilker Ersoy, Zainab Al-Taie, Yuexu Jiang, Duolin Wang, Megha Verma, Trupti Joshi, Richard D. Hammer, Dong Xu, Dmitriy Shin:
RDF Sketch Maps - Knowledge Complexity Reduction for Precision Medicine Analytics. PSB 2016: 417-428 - [r1]Qiuming Yao, Jianjiong Gao, Dong Xu:
Musite: Tool for Predicting Protein Phosphorylation Sites. Encyclopedia of Algorithms 2016: 1393-1397 - 2015
- [j51]Dong Xu, Kun Huang, Jeanette Schmidt:
Guest Editors Introduction to the Special Issue on Software and Databases. IEEE ACM Trans. Comput. Biol. Bioinform. 12(4): 793-794 (2015) - 2014
- [j50]Rui Liu
, Xiangtian Yu, Xiaoping Liu
, Dong Xu, Kazuyuki Aihara, Luonan Chen:
Identifying critical transitions of complex diseases based on a single sample. Bioinform. 30(11): 1579-1586 (2014) - [j49]Trupti Joshi, Robert Williamson, Kapil Patil, Suwit Viyanon, Xiangge Li, Yufu Zhang, Wenchuan Qi, Dong Li, Jeremy Zimmer, Uday Illindala, Shawn Foley, Robert Campbell, Ye Duan, Dong Xu:
Virtual physical examination (VPE): a multimedia system for education in medicine. Int. J. Funct. Informatics Pers. Medicine 4(3/4): 181-197 (2014) - [j48]Qiuming Yao, Huangyi Ge, Shangquan Wu, Ning Zhang
, Wei Chen, Chunhui Xu, Jianjiong Gao, Jay J. Thelen
, Dong Xu:
P3DB 3.0: From plant phosphorylation sites to protein networks. Nucleic Acids Res. 42(Database-Issue): 1206-1213 (2014) - [j47]Trupti Joshi
, Michael R. Fitzpatrick, Shiyuan Chen, Yang Liu, Hongxin Zhang, Ryan Z. Endacott, Eric C. Gaudiello, Gary Stacey, Henry T. Nguyen, Dong Xu:
Soybean knowledge base (SoyKB): a web resource for integration of soybean translational genomics and molecular breeding. Nucleic Acids Res. 42(Database-Issue): 1245-1252 (2014) - [c36]Yan Chen, Yi Shang, Dong Xu:
Multi-dimensional scaling and MODELLER-based evolutionary algorithms for protein model refinement. IEEE Congress on Evolutionary Computation 2014: 1038-1045 - [c35]Son P. Nguyen, Yi Shang, Dong Xu:
DL-PRO: A novel deep learning method for protein model quality assessment. IJCNN 2014: 2071-2078 - [i1]Jianjiong Gao
, Chao Zhang
, Martijn P. van Iersel
, Li Zhang, Dong Xu, Nikolaus Schultz
, Alexander R. Pico
:
BridgeDb app: unifying identifier mapping services for Cytoscape. F1000Research 3: 148 (2014) - 2013
- [j46]Chao Zhang
, Jiguang Wang
, Kristina Hanspers, Dong Xu, Luonan Chen, Alexander R. Pico
:
NOA: a cytoscape plugin for network ontology analysis. Bioinform. 29(16): 2066-2067 (2013) - [j45]Trupti Joshi
, Babu Valliyodan
, Jeng-Hung Wu, Suk-Ha Lee, Dong Xu, Henry T. Nguyen:
Genomic differences between cultivated soybean, G. max and its wild relative G. soja. BMC Genom. 14(S-1): S5 (2013) - [j44]Hao Zhang
, Zhi Li, Yanpu Li, Yuanning Liu, Junxin Liu, Xin Li, Tingjie Shen, Yunna Duan, Minggang Hu, Dong Xu:
A computational method for predicting regulation of human microRNAs on the influenza virus genome. BMC Syst. Biol. 7(S-2): S3 (2013) - [j43]Qingguo Wang
, Charles Shang, Dong Xu, Yi Shang:
New MDS and Clustering Based Algorithms for protein Model Quality Assessment and Selection. Int. J. Artif. Intell. Tools 22(5) (2013) - [j42]Yuanning Liu, Ya-Ping Chang, Dong Xu, Zhi Li, Hao Zhang
, Jie Li, Mingyao Tian:
Optimised design of siRNA based on multi-featured comparison and analysis of H1N1 virus. Int. J. Data Min. Bioinform. 7(4): 345-357 (2013) - [j41]Yuanning Liu, Yaping Chang, Chao Zhang
, Qingkai Wei, Jingbo Chen, Hui-Ling Chen
, Dong Xu:
Influence of mRNA Features on siRNA Interference Efficacy. J. Bioinform. Comput. Biol. 11(3) (2013) - [c34]Trupti Joshi, Michael R. Fitzpatrick, Shiyuan Chen, Yang Liu, Hongxin Zhang, Ryan Z. Endacott, Eric C. Gaudiello, Gary Stacey, Henry T. Nguyen, Dong Xu:
Soybean knowledge base (SoyKB): Bridging the gap between soybean translational genomics and breeding. BIBM 2013: 42-44 - 2012
- [j40]Chao Zhang
, Kristina Hanspers, Allan Kuchinsky, Nathan Salomonis, Dong Xu, Alexander R. Pico
:
Mosaic: making biological sense of complex networks. Bioinform. 28(14): 1943-1944 (2012) - [j39]Trupti Joshi
, Kapil Patil, Michael R. Fitzpatrick, D. Franklin Levi, Qiuming Yao, Jeffrey R. Cook, Zheng Wang, Marc Libault, Laurent Brechenmacher, Babu Valliyodan
, Xiaolei Wu, Jianlin Cheng
, Gary Stacey, Henry T. Nguyen, Dong Xu:
Soybean Knowledge Base (SoyKB): a web resource for soybean translational genomics. BMC Genom. 13(S-1): S15 (2012) - [j38]Ratchadaporn Kanawong, Wentao Xu, Dong Xu, Shao Li
, Tao Ma, Ye Duan:
An automatic tongue detection and segmentation framework for computer-aided tongue image analysis. Int. J. Funct. Informatics Pers. Medicine 4(1): 56-68 (2012) - [j37]Chao Zhang
, Guolu Zheng, Shunfu Xu, Dong Xu:
Computational Challenges in Characterization of Bacteria and Bacteria-Host Interactions Based on Genomic Data. J. Comput. Sci. Technol. 27(2): 225-239 (2012) - [c33]Tayo Obafemi-Ajayi
, Ratchadaporn Kanawong, Dong Xu, Shao Li
, Ye Duan:
Features for automated tongue image shape classification. BIBM Workshops 2012: 273-279 - [c32]Ratchadaporn Kanawong, Tayo Obafemi-Ajayi
, Jun Yu, Dong Xu, Shao Li
, Ye Duan:
ZHENG classification in Traditional Chinese Medicine based on modified specular-free tongue images. BIBM Workshops 2012: 288-294 - [c31]Hao Zhang, Xin Li, Yuanning Liu, Zhi Li, Minggang Hu, Dong Xu:
Human encoded miRNAs that regulate the inflenenza virus genome. ISB 2012: 22-25 - [c30]Jingfen Zhang, Dong Xu:
Protein Structure Prediction and Clustering Using MUFOLD. ISBRA 2012: 328-329 - [c29]Jianjiong Gao, Dong Xu:
Correlation Between Posttranslational Modification and Intrinsic Disorder in Protein. Pacific Symposium on Biocomputing 2012: 94-103 - 2011
- [j36]Guan Ning Lin, Chao Zhang
, Dong Xu:
Polytomy identification in microbial phylogenetic reconstruction. BMC Syst. Biol. 5(S-3): S2 (2011) - [j35]Liupu Wang, Juexin Wang, Michael Wang, Yanchun Liang, Dong Xu:
User experience evaluation of Google search for obtaining medical knowledge: a case study. Int. J. Data Min. Bioinform. 5(6): 626-639 (2011) - [j34]Qingguo Wang
, Yi Shang, Dong Xu:
Improving a Consensus Approach for Protein Structure Selection by Removing Redundancy. IEEE ACM Trans. Comput. Biol. Bioinform. 8(6): 1708-1715 (2011) - [c28]Juexin Wang, Fan Zhang, Yan Wang, Yuan Fu, Dong Xu, Yanchun Liang:
Identification of Salt Tolerance Genes in Rice from Microarray Data using SVM-RFE. BICoB 2011: 30-35 - [c27]Qingguo Wang
, Yi Shang, Dong Xu:
A Hybrid Consensus and Clustering Method for Protein Structure Selection. ICTAI 2011: 1-8 - 2010
- [j33]Dongyu Zhao, Yan Wang, Di Luo, Xiaohu Shi, Liupu Wang, Dong Xu, Jun Yu, Yanchun Liang:
PMirP: A pre-microRNA prediction method based on structure-sequence hybrid features. Artif. Intell. Medicine 49(2): 127-132 (2010) - [j32]Trupti Joshi
, Zhe Yan
, Marc Libault, Dong-Hoon Jeong, Sunhee Park, Pamela J. Green, D. Janine Sherrier
, Andrew Farmer, Greg May, Blake C. Meyers
, Dong Xu, Gary Stacey:
Prediction of novel miRNAs and associated target genes in Glycine max. BMC Bioinform. 11(S-1): 14 (2010) - [j31]Jianjiong Gao
, Dong Xu:
The Musite open-source framework for phosphorylation-site prediction. BMC Bioinform. 11(S-12): S9 (2010) - [j30]Guan Ning Lin, Zheng Wang, Dong Xu, Jianlin Cheng
:
SeqRate: sequence-based protein folding type classification and rates prediction. BMC Bioinform. 11(S-3): 1 (2010) - [j29]Gyan Prakash Srivastava, Ping Li, Jingdong Liu, Dong Xu:
Identification of transcription factor's targets using tissue-specific transcriptomic data in Arabidopsis thaliana. BMC Syst. Biol. 4(S-2): S2 (2010) - [j28]Gyan Prakash Srivastava, Jing Qiu, Dong Xu:
Genome-wide functional annotation by integrating multiple microarray datasets using meta-analysis. Int. J. Data Min. Bioinform. 4(4): 357-376 (2010) - [j27]Chi-Ren Shyu, Bin Pang, Pin-Hao Chi, Nan Zhao
, Dmitry Korkin, Dong Xu:
ProteinDBS v2.0: a web server for global and local protein structure search. Nucleic Acids Res. 38(Web-Server-Issue): 53-58 (2010) - [c26]Trupti Joshi, Qiuming Yao, D. Franklin Levi, Laurent Brechenmacher, Babu Valliyodan
, Gary Stacey, Henry T. Nguyen, Dong Xu:
SoyMetDB: The soybean metabolome database. BIBM 2010: 203-208 - [c25]Chao Zhang
, Shunfu Xu, Dong Xu:
Detection and application of CagA sequence markers for assessing risk factor of gastric cancer caused by Helicobacter pylori. BIBM 2010: 485-488 - [c24]Qingguo Wang
, Yi Shang, Dong Xu:
Protein structure selection based on consensus. IEEE Congress on Evolutionary Computation 2010: 1-7 - [p1]Zhao Song, Luonan Chen, Dong Xu:
Bioinformatics Methods for Protein Identification Using Peptide Mass Fingerprinting. Proteome Bioinformatics 2010: 7-22
2000 – 2009
- 2009
- [j26]Guan Ning Lin, Zhipeng Cai, Guohui Lin, Sounak Chakraborty, Dong Xu:
ComPhy: prokaryotic composite distance phylogenies inferred from whole-genome gene sets. BMC Bioinform. 10(S-1) (2009) - [j25]Dong Xu:
Mutual understanding between Traditional Chinese Medicine and systems biology: gaps, challenges and opportunities. Int. J. Funct. Informatics Pers. Medicine 2(3): 248-260 (2009) - [j24]Jianjiong Gao
, Ganesh Kumar Agrawal, Jay J. Thelen
, Dong Xu:
P3DB: a plant protein phosphorylation database. Nucleic Acids Res. 37(Database-Issue): 960-962 (2009) - [c23]Guan Ning Lin, Zheng Wang, Dong Xu, Jianlin Cheng
:
Sequence-Based Prediction of Protein Folding Rates Using Contacts, Secondary Structures and Support Vector Machines. BIBM 2009: 3-8 - [c22]Jianjiong Gao
, Ganesh Kumar Agrawal, Jay J. Thelen, Zoran Obradovic, A. Keith Dunker, Dong Xu:
A New Machine Learning Approach for Protein Phosphorylation Site Prediction in Plants. BICoB 2009: 18-29 - [e1]Dacheng Tao, Dong Xu, Xuelong Li
:
Semantic Mining Technologies for Multimedia Databases. IGI Global 2009, ISBN 978-1-60566-188-9 [contents] - 2008
- [b1]Dong Xu, James M. Keller, Mihail Popescu, Rajkumar Bondugula:
Applications of Fuzzy Logic in Bioinformatics. Series on Advances in Bioinformatics and Computational Biology 9, WorldScientific 2008, ISBN 978-1-84816-258-7, pp. 1-248 - [j23]Christopher A. Bottoms
, Dong Xu:
Wanted: unique names for unique atom positions. PDB-wide analysis of diastereotopic atom names of small molecules containing diphosphate. BMC Bioinform. 9(S-9) (2008) - [j22]Chao Zhang
, Trupti Joshi
, Guan Ning Lin, Dong Xu:
An integrated probabilistic approach for gene function prediction using multiple sources of high-throughput data. Int. J. Comput. Biol. Drug Des. 1(3): 254-274 (2008) - [j21]Robin Kramer, Dong Xu:
Projecting Gene Expression Trajectories through Inducing Differential Equations from Microarray Time Series Experiments. J. Signal Process. Syst. 50(3): 321-329 (2008) - [c21]Qingguo Wang
, Yi Shang, Dong Xu:
A new clustering-based method for protein structure selection. IJCNN 2008: 2891-2898 - 2007
- [c20]Mihail Popescu, Dong Xu, Erik Taylor:
GoFuzzKegg: Mapping Genes to KEGG Pathways Using an Ontological Fuzzy Rule System. CIBCB 2007: 298-303 - [c19]Mihail Popescu
, Dong Xu:
Mapping Genes to Pathways Using Ontological Fuzzy Rule Systems. FUZZ-IEEE 2007: 1-6 - 2006
- [j20]Yong Wang, Trupti Joshi
, Xiang-Sun Zhang, Dong Xu, Luonan Chen:
Inferring gene regulatory networks from multiple microarray datasets. Bioinform. 22(19): 2413-2420 (2006) - [j19]Pin-Hao Chi, Chi-Ren Shyu, Dong Xu:
A fast SCOP fold classification system using content-based E-Predict algorithm. BMC Bioinform. 7: 362 (2006) - [j18]Xiaomeng Wu, Xiu-Feng Wan, Gang Wu, Dong Xu, Guohui Lin:
Phylogenetic analysis using complete signature information of whole genomes and clustered Neighbour-Joining method. Int. J. Bioinform. Res. Appl. 2(3): 219-248 (2006) - [j17]X.-F. Wan, J. Zhou, Dong Xu:
CodonO: a new informatics method for measuring synonymous codon usage bias within and across genomes. Int. J. Gen. Syst. 35(1): 109-125 (2006) - [j16]Xiu-Feng Wan, Guohui Lin, Dong Xu:
Rnall: an Efficient Algorithm for Predicting Rna Local Secondary Structural Landscape in Genomes. J. Bioinform. Comput. Biol. 4(5): 1015-1032 (2006) - [c18]Zhao Song, Luonan Chen, Chao Zhang
, Dong Xu:
Design and Implementation of Probability-Based Scoring Function for Peptide Mass Fingerprinting Protein Identification. EMBC 2006: 4556-4559 - [c17]Rajkumar Bondugula, Dong Xu, Yi Shang:
A Fast Algorithm for Low-Resolution Protein Structure Prediction. EMBC 2006: 5826-5829 - [c16]Dong Xu, Rajkumar Bondugula, Mihail Popescu
, James M. Keller:
Bioinformatics and Fuzzy Logic. FUZZ-IEEE 2006: 817-824 - [c15]Robin Kramer, Victor Olman, Ying Xu, Dong Xu:
DigitalTree: A Tool for Displaying Biological Data in Tree Structure. International Conference on Computational Science (2) 2006: 855-862 - [c14]Yong Wang, Trupti Joshi, Dong Xu, Xiang-Sun Zhang, Luonan Chen:
Supervised Inference of Gene Regulatory Networks by Linear Programming. ICIC (3) 2006: 551-561 - 2005
- [j15]Trupti Joshi, Yu Chen, Nickolai Alexandrov, Dong Xu:
Cellular function prediction and biological pathway discovery in Arabidopsis thaliana using microarray data. Int. J. Bioinform. Res. Appl. 1(3): 335-350 (2005) - [j14]Zhi-Zhong Chen, Guohui Lin, Romeo Rizzi
, Jianjun Wen, Dong Xu, Ying Xu, Tao Jiang
:
More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. J. Comput. Biol. 12(2): 129-146 (2005) - [c13]Rajkumar Bondugula, Ognen Duzlevski, Dong Xu:
Profiles and fuzzy K-nearest neighbor algorithm for protein secondary structure prediction. APBC 2005: 85-94 - [c12]Xiaomeng Wu, Guohui Lin, Xiu-Feng Wan, Dong Xu:
Whole Genome Phylogeny Based on Clustered Signature String Composition. CSB Workshops 2005: 53-54 - 2004
- [j13]Jun-tao Guo, Kyle Ellrott
, Won Jae Chung, Dong Xu, Sergei Passovets, Ying Xu:
PROSPECT-PSPP: an automatic computational pipeline for protein structure prediction. Nucleic Acids Res. 32(Web-Server-Issue): 522-525 (2004) - [j12]Chi-Ren Shyu, Pin-Hao Chi, Grant J. Scott, Dong Xu:
ProteinDBS: a real-time retrieval system for protein structure comparison. Nucleic Acids Res. 32(Web-Server-Issue): 572-575 (2004) - 2003
- [j11]Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott
, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu:
A computational pipeline for protein structure prediction and analysis at genome scale. Bioinform. 19(15): 1985-1996 (2003) - [j10]Victor Olman, Dong Xu, Ying Xu:
Cubic: Identification of Regulatory Binding Sites through Data Clustering. J. Bioinform. Comput. Biol. 1(1): 21-40 (2003) - [j9]Guohui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang
, Jianjun Wen, Ying Xu:
Computational Assignment of Protein Backbone Nmr Peaks Byefficient Bounding and Filtering. J. Bioinform. Comput. Biol. 1(2): 387-410 (2003) - [j8]Zhi-Zhong Chen, Tao Jiang
, Guo-Hui Lin, Jianjun Wen, Dong Xu, Jinbo Xu, Ying Xu:
Approximation algorithms for NMR spectral peak assignment. Theor. Comput. Sci. 299(1-3): 211-229 (2003) - [c11]Manesh J. Shah, Sergei Passovets, Dongsup Kim, Kyle Ellrott
, Li Wang, Inna Vokler, Philip F. LoCascio, Dong Xu, Ying Xu:
A Computational Pipeline for Protein Structure Prediction and Analysis at Genome Scale. BIBE 2003: 3-10 - [c10]Yu Chen, Trupti Joshi, Ying Xu, Dong Xu:
Towards Automated Derivation of Biological Pathways Using High-Throughput Biological Data. BIBE 2003: 18-25 - [c9]Xiang Wan, Dong Xu, Carolyn M. Slupsky, Guohui Lin:
Automated Protein NMR Resonance Assignments. CSB 2003: 197-208 - [c8]Jane Razumovskaya, Victor Olman, Dong Xu, Edward C. Uberbacher, Nathan Verberkmoes, Ying Xu:
A Computational Method for Assessing Peptide-Identification Reliability in Tandem Mass Spectrometry Analysis with SEQUEST. CSB 2003: 421-423 - [c7]Victor Olman, Dong Xu, Ying Xu:
CUBIC: Identification of Regulatory Binding Sites Through Data Clustering. CSB 2003: 448-449 - [c6]Zhi-Zhong Chen, Tao Jiang, Guohui Lin, Romeo Rizzi, Jianjun Wen, Dong Xu, Ying Xu:
More Reliable Protein NMR Peak Assignment via Improved 2-Interval Scheduling. ESA 2003: 580-592 - [c5]Victor Olman, Dong Xu, Ying Xu:
Identification of Regulatory Binding Sites Using Minimum Spanning Trees. Pacific Symposium on Biocomputing 2003: 327-338 - 2002
- [j7]Ying Xu, Victor Olman, Dong Xu:
Clustering gene expression data using a graph-theoretic approach: an application of minimum spanning trees. Bioinform. 18(4): 536-545 (2002) - [j6]Dong Xu, Guangshan Li, Liyou Wu, Jizhong Zhou
, Ying Xu:
PRIMEGENS: robust and efficient design of gene-specific probes for microarray analysis. Bioinform. 18(11): 1432-1437 (2002) - [j5]Ying Xu, Dong Xu, Dongsup Kim, Victor Olman, Jane Razumovskaya, Tao Jiang
:
Automated assignment of backbone NMR peaks using constrained bipartite matching. Comput. Sci. Eng. 4(1): 50-62 (2002) - [c4]Guo-Hui Lin, Dong Xu, Zhi-Zhong Chen, Tao Jiang
, Jianjun Wen, Ying Xu:
An Efficient Branch-and-Bound Algorithm for the Assignment of Protein Backbone NMR Peaks. CSB 2002: 165-174 - [c3]Zhi-Zhong Chen, Tao Jiang
, Guo-Hui Lin, Jianjun Wen, Dong Xu, Ying Xu:
Improved Approximation Algorithms for NMR Spectral Peak Assignment. WABI 2002: 82-96 - 2000
- [j4]Dong Xu, Michael A. Unseren, Ying Xu, Edward C. Uberbacher:
Sequence-structure specificity of a knowledge based energy function at the secondary structure level. Bioinform. 16(3): 269-285 (2000) - [j3]Ying Xu, Dong Xu, Harold N. Gabow:
Protein domain decomposition using a graph-theoretic approach. Bioinform. 16(12): 1091-1104 (2000) - [j2]Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein:
A Computational Method for NMR-Constrained Protein Threading. J. Comput. Biol. 7(3-4): 449-467 (2000) - [c2]Ying Xu, Dong Xu, Oakley H. Crawford, J. Ralph Einstein, Engin Serpersu
:
Protein structure determination using protein threading and sparse NMR data (extended abstract). RECOMB 2000: 299-307
1990 – 1999
- 1998
- [j1]Ying Xu, Dong Xu, Edward C. Uberbacher:
An Efficient Computational Method for Globally Optimal Threading. J. Comput. Biol. 5(3): 597-614 (1998) - [c1]Ying Xu, Dong Xu, Edward C. Uberbacher:
A new method for modeling and solving the protein fold recognition problem (extended abstract). RECOMB 1998: 285-292
Coauthor Index
![](https://dblp.org/img/cog.dark.24x24.png)
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