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Brian D. Athey
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2020 – today
- 2022
- [j21]Yongqun He, Hong Yu, Anthony Huffman, Asiyah Yu Lin, Darren A. Natale
, John Beverley
, Ling Zheng, Yehoshua Perl, Zhigang Wang, Yingtong Liu, Edison Ong, Yang Wang, Philip Huang
, Long Tran, Jinyang Du, Zalan Shah, Easheta Shah, Roshan Desai, Hsin-Hui Huang, Yujia Tian, Eric Merrell, William D. Duncan, Sivaram Arabandi, Lynn M. Schriml, Jie Zheng, Anna Maria Masci, Liwei Wang, Hongfang Liu, Fatima Zohra Smaili
, Robert Hoehndorf
, Zoë May Pendlington
, Paola Roncaglia
, Xianwei Ye, Jiangan Xie, Yi-Wei Tang, Xiaolin Yang, Suyuan Peng, Luxia Zhang, Luonan Chen, Junguk Hur
, Gilbert S. Omenn, Brian D. Athey, Barry Smith:
A comprehensive update on CIDO: the community-based coronavirus infectious disease ontology. J. Biomed. Semant. 13(1): 25 (2022) - 2021
- [j20]Narathip Reamaroon
, Michael W. Sjoding, Jonathan Gryak
, Brian D. Athey, Kayvan Najarian, Harm Derksen:
Automated detection of acute respiratory distress syndrome from chest X-Rays using Directionality Measure and deep learning features. Comput. Biol. Medicine 134: 104463 (2021) - 2020
- [j19]Narathip Reamaroon
, Michael W. Sjoding, Harm Derksen, Elyas Sabeti, Jonathan Gryak
, Ryan P. Barbaro
, Brian D. Athey, Kayvan Najarian:
Robust segmentation of lung in chest x-ray: applications in analysis of acute respiratory distress syndrome. BMC Medical Imaging 20(1): 116 (2020) - [c17]Yongqun He, Hong Yu, Edison Ong, Yang Wang, Yingtong Liu, Anthony Huffman, Hsin-Hui Huang, John Beverley, Asiyah Yu Lin, William D. Duncan, Sivaram Arabandi, Jiangan Xie, Junguk Hur, Xiaolin Yang, Luonan Chen, Gilbert S. Omenn, Brian D. Athey, Barry Smith:
CIDO: The Community-Based Coronavirus Infectious Disease Ontology. ICBO/ODLS 2020: 1-10
2010 – 2019
- 2018
- [c16]Alexandr A. Kalinin, Brian D. Athey, Ivo D. Dinov:
Evaluation of Methods for Cell Nuclear Structure Analysis from Microscopy Data. AIST (Supplement) 2018: 235-240 - [c15]Alexandr A. Kalinin
, Ari Allyn-Feuer, Alexander S. Ade, Gordon-Victor Fon, Walter Meixner, David Dilworth, Jeffrey R. de Wet, Gerald A. Higgins
, Gen Zheng, Amy Creekmore, John W. Wiley, James E. Verdone, Robert W. Veltri, Kenneth J. Pienta, Donald S. Coffey, Brian D. Athey, Ivo D. Dinov
:
3D Cell Nuclear Morphology: Microscopy Imaging Dataset and Voxel-Based Morphometry Classification Results. CVPR Workshops 2018: 2272-2280 - [i1]Alexandr A. Kalinin
, Gerald A. Higgins, Narathip Reamaroon, S. M. Reza Soroushmehr, Ari Allyn-Feuer, Ivo D. Dinov
, Kayvan Najarian, Brian D. Athey:
Deep Learning in Pharmacogenomics: From Gene Regulation to Patient Stratification. CoRR abs/1801.08570 (2018) - 2014
- [j18]William Duren, Terry E. Weymouth, Tim Hull, Gilbert S. Omenn
, Brian D. Athey
, Charles F. Burant
, Alla Karnovsky:
MetDisease - connecting metabolites to diseases via literature. Bioinform. 30(15): 2239-2241 (2014) - [j17]Sirarat Sarntivijai
, Yu Lin, Zuoshuang Xiang, Terrence F. Meehan
, Alexander D. Diehl
, Uma D. Vempati, Stephan C. Schürer, Chao Pang
, James Malone, Helen E. Parkinson
, Yue Liu, Terue Takatsuki, Kaoru Saijo, Hiroshi Masuya, Yukio Nakamura, Matthew H. Brush, Melissa A. Haendel
, Jie Zheng, Christian J. Stoeckert Jr., Bjoern Peters, Christopher J. Mungall, Thomas E. Carey
, David J. States, Brian D. Athey
, Yongqun He
:
CLO: The cell line ontology. J. Biomed. Semant. 5: 37 (2014) - 2012
- [j16]Alla Karnovsky, Terry E. Weymouth, Tim Hull, V. Glenn Tarcea, Giovanni Scardoni, Carlo Laudanna, Maureen A. Sartor, Kathleen A. Stringer
, H. V. Jagadish, Charles F. Burant
, Brian D. Athey
, Gilbert S. Omenn
:
Metscape 2 bioinformatics tool for the analysis and visualization of metabolomics and gene expression data. Bioinform. 28(3): 373-380 (2012) - [j15]Maureen A. Sartor, Alexander S. Ade, Zach Wright, David J. States, Gilbert S. Omenn
, Brian D. Athey
, Alla Karnovsky:
Metab2MeSH: annotating compounds with medical subject headings. Bioinform. 28(10): 1408-1410 (2012) - [j14]Brian D. Athey
, James D. Cavalcoli, H. V. Jagadish, Gilbert S. Omenn
, Barbara Mirel, Matthias Kretzler, Charles F. Burant
, Raphael D. Isokpehi, Charles DeLisi:
The NIH National Center for Integrative Biomedical Informatics (NCIBI). J. Am. Medical Informatics Assoc. 19(2): 166-170 (2012) - [c14]Kenneth D. Mandl, Brian D. Athey, Daniel S. Fritsch, Shawn N. Murphy, Will Ross:
Building the SMART Platforms Ecosystem: Toward an Apps-Based Health Information Economy. AMIA 2012 - [c13]Luke V. Rasmussen, Brian D. Athey, Andrew D. Boyd, Bradley A. Malin, Shawn N. Murphy:
Rethinking the "Honest Broker" in the Changing Face of Security and Privacy. AMIA 2012 - 2011
- [j13]Gang Su, Charles F. Burant
, Christopher W. Beecher, Brian D. Athey
, Fan Meng:
Integrated metabolome and transcriptome analysis of the NCI60 dataset. BMC Bioinform. 12(S-1): S36 (2011) - [j12]Jessica D. Tenenbaum, Patricia L. Whetzel, Kent Anderson, Charles D. Borromeo
, Ivo D. Dinov
, Davera Gabriel, Beth A. Kirschner, Barbara Mirel, Timothy D. Morris, Natasha Fridman Noy, Csongor Nyulas, David Rubenson, Paul R. Saxman, Harpreet Singh, Nancy Whelan, Zach Wright, Brian D. Athey
, Michael J. Becich, Geoffrey S. Ginsburg, Mark A. Musen
, Kevin A. Smith, Alice F. Tarantal, Daniel L. Rubin, Peter Lyster:
The Biomedical Resource Ontology (BRO) to enable resource discovery in clinical and translational research. J. Biomed. Informatics 44(1): 137-145 (2011) - [c12]Sirarat Sarntivijai, Zuoshuang Xiang, Terrence F. Meehan, Alexander D. Diehl, Uma Vempati, Stephan C. Schürer, Chao Pang, James Malone, Helen E. Parkinson, Brian D. Athey, Yongqun He:
Cell Line Ontology: Redesigning the Cell Line Knowledgebase to Aid Integrative Translational Informatics. ICBO 2011 - 2010
- [j11]Joshua Buckner, Justin Wilson, Mark Seligman, Brian D. Athey
, Stanley J. Watson, Fan Meng:
The gputools package enables GPU computing in R. Bioinform. 26(1): 134-135 (2010) - [j10]Maureen A. Sartor, Vasudeva Mahavisno, Venkateshwar G. Keshamouni
, James D. Cavalcoli, Zach Wright, Alla Karnovsky, Rork Kuick, H. V. Jagadish, Barbara Mirel, Terry E. Weymouth, Brian D. Athey
, Gilbert S. Omenn
:
ConceptGen: a gene set enrichment and gene set relation mapping tool. Bioinform. 26(4): 456-463 (2010) - [j9]Jing Gao, V. Glenn Tarcea, Alla Karnovsky, Barbara R. Mirel, Terry E. Weymouth, Christopher W. Beecher, James D. Cavalcoli, Brian D. Athey
, Gilbert S. Omenn
, Charles F. Burant
, H. V. Jagadish:
Metscape: a Cytoscape plug-in for visualizing and interpreting metabolomic data in the context of human metabolic networks. Bioinform. 26(7): 971-973 (2010) - [j8]Gang Su, Brian D. Athey
, Fan Meng:
GSearcher: Agile Attribute Querying for Biological Networks. Bioinform. 26(24): 3138-3139 (2010)
2000 – 2009
- 2009
- [j7]David J. States, Alexander S. Ade, Zachary C. Wright, Aaron V. Bookvich, Brian D. Athey
:
MiSearch adaptive pubMed search tool. Bioinform. 25(7): 974-976 (2009) - [j6]Weijian Xuan, Manhong Dai, Barbara Mirel, Jean Song, Brian D. Athey
, Stanley J. Watson, Fan Meng:
Open Biomedical Ontology-based Medline exploration. BMC Bioinform. 10(S-5) (2009) - [j5]Andrew D. Boyd
, Paul R. Saxman, Dale A. Hunscher, Kevin A. Smith, Timothy D. Morris, Michelle Kaston, Frederick Bayoff, Bruce Rogers, Pamela Hayes, Namrata Rajeev, Eva Kline-Rogers, Kim Eagle, Daniel J. Clauw, John F. Greden, Lee A. Green, Brian D. Athey
:
Application of Information Technology: The University of Michigan Honest Broker: A Web-based Service for Clinical and Translational Research and Practice. J. Am. Medical Informatics Assoc. 16(6): 784-791 (2009) - [j4]V. Glenn Tarcea, Terry E. Weymouth, Alexander S. Ade, Aaron V. Bookvich, Jing Gao, Vasudeva Mahavisno, Zach Wright, Adriane Chapman, Magesh Jayapandian, Arzucan Özgür
, Yuanyuan Tian, James D. Cavalcoli, Barbara Mirel, Jignesh M. Patel, Dragomir R. Radev, Brian D. Athey
, David J. States, H. V. Jagadish:
Michigan molecular interactions r2: from interacting proteins to pathways. Nucleic Acids Res. 37(Database-Issue): 642-646 (2009) - [c11]Weijian Xuan, Manhong Dai, Joshua Buckner, Barbara Mirel, Jean Song, Brian D. Athey
, Stanley J. Watson, Fan Meng:
Cross-Domain Neurobiology Data Integration and Exploration. IJCBS 2009: 37-43 - 2008
- [j3]Sirarat Sarntivijai
, Alexander S. Ade, Brian D. Athey
, David J. States:
A bioinformatics analysis of the cell line nomenclature. Bioinform. 24(23): 2760-2766 (2008) - 2007
- [j2]Andrew D. Boyd
, Charlie Hosner, Dale A. Hunscher, Brian D. Athey
, Daniel J. Clauw, Lee A. Green:
An 'Honest Broker' mechanism to maintain privacy for patient care and academic medical research. Int. J. Medical Informatics 76(5-6): 407-411 (2007) - [j1]Magesh Jayapandian, Adriane Chapman, V. Glenn Tarcea, Cong Yu, Aaron Elkiss, Angela Ianni
, Bin Liu, Arnab Nandi
, Carlos Santos, Philip C. Andrews
, Brian D. Athey
, David J. States, H. V. Jagadish:
Michigan Molecular Interactions (MiMI): putting the jigsaw puzzle together. Nucleic Acids Res. 35(Database-Issue): 566-571 (2007) - [c10]Brian D. Athey
:
Integrative Biomedical Informatics. BIBE 2007: 1450 - 2006
- [c9]Pinglang Wang, Manhong Dai, Weijian Xuan, Richard C. McEachin, Anne U. Jackson, Laura J. Scott, Brian D. Athey
, Stanley J. Watson, Fan Meng:
SNP Function Portal: a web database for exploring the function implication of SNP alleles. ISMB (Supplement of Bioinformatics) 2006: 523-529 - 2005
- [c8]Andrew D. Boyd, Dale A. Hunscher, Adam J. Kramer, Charles Hosner, Paul R. Saxman, Brian D. Athey, John F. Greden, Daniel J. Clauw:
The "Honest Broker" Method of Integrating Interdisciplinary research Data. AMIA 2005 - [c7]Thomas J. Hacker, Brian D. Noble, Brian D. Athey
:
Adaptive data block scheduling for parallel TCP streams. HPDC 2005: 265-275 - 2004
- [c6]Beth A. Kirschner, Thomas J. Hacker, William A. Adamson, Brian D. Athey
:
Walden: A Scalable Solution for Grid Account Management. GRID 2004: 102-109 - [c5]Thomas J. Hacker, Brian D. Noble, Brian D. Athey
:
Improving Throughput and Maintaining Fairness using Parallel TCP. INFOCOM 2004: 2480-2489 - 2002
- [c4]Thomas J. Hacker, Brian D. Athey
, Brian Noble:
The End-to-End Performance Effects of Parallel TCP Sockets on a Lossy Wide-Area Network. IPDPS 2002 - [c3]William Thigpen, Thomas J. Hacker, Brian D. Athey, Laura F. McGinnis:
Distributed Accounting on the Grid. JCIS 2002: 1147-1150 - [c2]Thomas J. Hacker, Brian Noble, Brian D. Athey:
The effects of systemic packet loss on aggregate TCP flows. SC 2002: 52:1-52:15 - 2001
- [c1]Thomas J. Hacker, Brian D. Athey
:
A Methodology for Account Management in Grid Computing Environments. GRID 2001: 133-144
Coauthor Index
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last updated on 2024-08-05 20:21 CEST by the dblp team
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