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2020 – today
- 2022
[j16]Suvarna Nadendla, Rebecca C. Jackson
, James B. Munro, Federica Quaglia, Bálint Mészáros, Dustin Olley, Elizabeth T. Hobbs, Stephen M. Goralski, Marcus C. Chibucos, Christopher J. Mungall, Silvio C. E. Tosatto, Ivan Erill, Michelle G. Giglio:
ECO: the Evidence and Conclusion Ontology, an update for 2022. Nucleic Acids Res. 50(D1): 1515-1521 (2022)- 2021
- [j15]Elizabeth T. Hobbs, Stephen M. Goralski, Ashley Mitchell, Andrew Simpson, Dorjan Leka, Emmanuel Kotey, Matt Sekira, James B. Munro, Suvarna Nadendla, Rebecca Jackson, Aitor Gonzalez-Agirre, Martin Krallinger, Michelle G. Giglio, Ivan Erill:
ECO-CollecTF: A Corpus of Annotated Evidence-Based Assertions in Biomedical Manuscripts. Frontiers Res. Metrics Anal. 6: 674205 (2021) - [j14]Jolene Ramsey, Brenley K. McIntosh, Daniel P. Renfro, Suzanne A. Aleksander, Sandra A. LaBonte, Curtis Ross, Adrienne E. Zweifel, Nathan Liles, Shabnam Farrar, Jason J. Gill, Ivan Erill, Sarah Ades, Tanya Z. Berardini, Jennifer A. Bennett, Siobhan M. Brady, Robert Britton, Seth Carbon, Steven M. Caruso, Dave Clements, Ritu Dalia, Meredith Defelice, Erin L. Doyle, Iddo Friedberg, Susan M. R. Gurney, Lee Hughes, Allison Johnson, Jason M. Kowalski, Donghui Li, Ruth C. Lovering, Tamara L. Mans, Fiona McCarthy, Sean D. Moore, Rebecca Murphy, Timothy D. Paustian, Sarah Perdue, Celeste N. Peterson, Birgit M. Prüß, Margaret S. Saha, Robert R. Sheehy, John T. Tansey, Louise Temple, Alexander William Thorman, Saul Trevino, Amy Cheng Vollmer, Virginia Walbot, Joanne Willey, Deborah A. Siegele, James C. Hu:
Crowdsourcing biocuration: The Community Assessment of Community Annotation with Ontologies (CACAO). PLoS Comput. Biol. 17(10) (2021) - 2020
- [j13]Qingyu Chen, Ramona Britto, Ivan Erill, Constance J. Jeffery, Arthur Liberzon, Michele Magrane, Jun-ichi Onami, Marc Robinson-Rechavi, Jana Sponarova, Justin Zobel, Karin Verspoor:
Quality Matters: Biocuration Experts on the Impact of Duplication and Other Data Quality Issues in Biological Databases. Genom. Proteom. Bioinform. 18(2): 91-103 (2020) - [c1]Elizabeth T. Hobbs, Stephen M. Goralski, Ashley Mitchell, Andrew Simpson, Dorjan Leka, Emmanuel Kotey, Matt Sekira, James B. Munro, Suvarna Nadendla, Rebecca Jackson, Aitor Gonzalez-Agirre, Martin Krallinger, Michelle G. Giglio, Ivan Erill:
Corpora as Evolving Entities: Embedding Corpora in Biomedical Ontologies. ICBO/ODLS 2020: 1-11
2010 – 2019
- 2019
- [j12]Michelle G. Giglio, Rebecca Tauber, Suvarna Nadendla, James B. Munro, Dustin Olley, Shoshannah Ball, Elvira Mitraka, Lynn M. Schriml, Pascale Gaudet, Elizabeth T. Hobbs, Ivan Erill, Deborah A. Siegele, James C. Hu, Chris Mungall, Marcus C. Chibucos:
ECO, the Evidence & Conclusion Ontology: community standard for evidence information. Nucleic Acids Res. 47(Database-Issue): D1186-D1194 (2019) - 2016
- [j11]Elizabeth T. Hobbs, Talmo Pereira, Patrick K. O'Neill, Ivan Erill:
A Bayesian inference method for the analysis of transcriptional regulatory networks in metagenomic data. Algorithms Mol. Biol. 11: 19 (2016) - [j10]Sefa Kiliç, Dinara M. Sagitova, Shoshannah Wolfish, Benoit Bely, Mélanie Courtot, Stacy Ciufo, Tatiana A. Tatusova, Claire O'Donovan, Marcus C. Chibucos, Maria Jesus Martin, Ivan Erill:
From data repositories to submission portals: rethinking the role of domain-specific databases in CollecTF. Database J. Biol. Databases Curation 2016 (2016) - [j9]Sefa Kiliç, Ivan Erill:
Assessment of transfer methods for comparative genomics of regulatory networks in bacteria. BMC Bioinform. 17(S-8): 277 (2016) - [j8]Patrick K. O'Neill, Ivan Erill:
Parametric bootstrapping for biological sequence motifs. BMC Bioinform. 17: 406 (2016) - 2014
- [j7]Joseph P. Cornish, Neus Sanchez-Alberola, Patrick K. O'Neill, Ronald O'Keefe, Jameel Gheba, Ivan Erill:
Characterization of the SOS meta-regulon in the human gut microbiome. Bioinform. 30(9): 1193-1197 (2014) - [j6]Patrick K. O'Neill, Robert Forder, Ivan Erill:
Informational Requirements for Transcriptional Regulation. J. Comput. Biol. 21(5): 373-384 (2014) - [j5]Sefa Kiliç, Elliot R. White, Dinara M. Sagitova, Joseph P. Cornish, Ivan Erill:
CollecTF: a database of experimentally validated transcription factor-binding sites in Bacteria. Nucleic Acids Res. 42(Database-Issue): 156-160 (2014) - 2012
- [j4]Laura J. Anzaldi, Daniel Muñoz-Fernández, Ivan Erill:
BioWord: a sequence manipulation suite for Microsoft Word. BMC Bioinform. 13: 124 (2012)
2000 – 2009
- 2009
- [j3]Ivan Erill, Michael C. O'Neill:
A reexamination of information theory-based methods for DNA-binding site identification. BMC Bioinform. 10 (2009) - 2007
- [j2]Gemma Gabriel, Ivan Erill, Jaume Caro, Rodrigo Gómez, Dolors Riera, Rosa Villa, Philippe Godignon:
Manufacturing and full characterization of silicon carbide-based multi-sensor micro-probes for biomedical applications. Microelectron. J. 38(3): 406-415 (2007) - 2003
- [j1]Ivan Erill, Marcos Escribano, Susana Campoy, Jordi Barbé:
In silico analysis reveals substantial variability in the gene contents of the gamma proteobacteria LexA-regulon. Bioinform. 19(17): 2225-2236 (2003)
Coauthor Index
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