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Jingyi Jessica Li
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2020 – today
- 2023
- [j20]Chihao Zhang
, Shihua Zhang
, Jingyi Jessica Li
:
A Python Package itca for Information-Theoretic Classification Accuracy: A Criterion That Guides Data-Driven Combination of Ambiguous Outcome Labels in Multiclass Classification. J. Comput. Biol. 30(11): 1246-1249 (2023) - 2022
- [j19]Dongyuan Song, Nan Miles Xi
, Jingyi Jessica Li
, Lin Wang
:
scSampler: fast diversity-preserving subsampling of large-scale single-cell transcriptomic data. Bioinform. 38(11): 3126-3127 (2022) - [j18]Elvis Han Cui, Dongyuan Song, Weng Kee Wong, Jingyi Jessica Li
:
Single-cell generalized trend model (scGTM): a flexible and interpretable model of gene expression trend along cell pseudotime. Bioinform. 38(16): 3927-3934 (2022) - [j17]Tianyi Sun, Dongyuan Song, Wei Vivian Li
, Jingyi Jessica Li
:
Simulating Single-Cell Gene Expression Count Data with Preserved Gene Correlations by scDesign2. J. Comput. Biol. 29(1): 23-26 (2022) - [j16]Chihao Zhang
, Yiling Elaine Chen, Shihua Zhang, Jingyi Jessica Li:
Information-theoretic Classification Accuracy: A Criterion that Guides Data-driven Combination of Ambiguous Outcome Labels in Multi-class Classification. J. Mach. Learn. Res. 23: 341:1-341:65 (2022) - [i4]Lijia Wang, Y. X. Rachel Wang, Jingyi Jessica Li, Xin Tong:
Hierarchical Neyman-Pearson Classification for Prioritizing Severe Disease Categories in COVID-19 Patient Data. CoRR abs/2210.02197 (2022) - 2021
- [j15]Yidan Eden Sun
, Heather J. Zhou, Jingyi Jessica Li:
Bipartite tight spectral clustering (BiTSC) algorithm for identifying conserved gene co-clusters in two species. Bioinform. 37(9): 1225-1233 (2021) - [j14]Yixin Guo, Ziwei Xue
, Ruihong Yuan, Jingyi Jessica Li
, William A. Pastor, Wanlu Liu
:
RAD: a web application to identify region associated differentially expressed genes. Bioinform. 37(17): 2741-2743 (2021) - [j13]Dongyuan Song, Kexin Li, Zachary Hemminger, Roy Wollman, Jingyi Jessica Li:
scPNMF: sparse gene encoding of single cells to facilitate gene selection for targeted gene profiling. Bioinform. 37(Supplement): 358-366 (2021) - [j12]Jingyi Jessica Li, Yiling Elaine Chen, Xin Tong:
A flexible model-free prediction-based framework for feature ranking. J. Mach. Learn. Res. 22: 124:1-124:54 (2021) - [j11]Ning Wang, Diane Lefaudeux, Anup Mazumder, Jingyi Jessica Li
, Alexander Hoffmann
:
Identifying the combinatorial control of signal-dependent transcription factors. PLoS Comput. Biol. 17(6) (2021) - [i3]Chihao Zhang, Yiling Elaine Chen, Shihua Zhang, Jingyi Jessica Li:
Information-theoretic Classification Accuracy: A Criterion that Guides Data-driven Combination of Ambiguous Outcome Labels in Multi-class Classification. CoRR abs/2109.00582 (2021) - 2020
- [j10]Jingyi Jessica Li
, Xin Tong
:
Statistical Hypothesis Testing versus Machine Learning Binary Classification: Distinctions and Guidelines. Patterns 1(7): 100115 (2020) - [i2]Wei Vivian Li, Xin Tong, Jingyi Jessica Li:
Bridging Cost-sensitive and Neyman-Pearson Paradigms for Asymmetric Binary Classification. CoRR abs/2012.14951 (2020)
2010 – 2019
- 2019
- [j9]Wei Vivian Li
, Jingyi Jessica Li
:
A statistical simulator scDesign for rational scRNA-seq experimental design. Bioinform. 35(14): i41-i50 (2019) - [j8]Dat Duong, Wasi Uddin Ahmad, Eleazar Eskin, Kai-Wei Chang, Jingyi Jessica Li
:
Word and Sentence Embedding Tools to Measure Semantic Similarity of Gene Ontology Terms by Their Definitions. J. Comput. Biol. 26(1): 38-52 (2019) - [j7]Zahra S. Razaee, Arash A. Amini, Jingyi Jessica Li
:
Matched Bipartite Block Model with Covariates. J. Mach. Learn. Res. 20: 34:1-34:44 (2019) - 2018
- [j6]Wei Vivian Li
, Jingyi Jessica Li
:
Modeling and analysis of RNA-seq data: a review from a statistical perspective. Quant. Biol. 6(3): 195-209 (2018) - 2017
- [j5]Sara M. Clifton
, Chaeryon Kang, Jingyi Jessica Li
, Qi Long, Nirmish Shah
, Daniel M. Abrams
:
Hybrid Statistical and Mechanistic Mathematical Model Guides Mobile Health Intervention for Chronic Pain. J. Comput. Biol. 24(7): 675-688 (2017) - [i1]Zahra S. Razaee, Arash A. Amini, Jingyi Jessica Li:
Matched bipartite block model with covariates. CoRR abs/1703.04943 (2017) - 2016
- [j4]Wei Vivian Li
, Zahra S. Razaee, Jingyi Jessica Li
:
Epigenome overlap measure (EPOM) for comparing tissue/cell types based on chromatin states. BMC Genom. 17(S-1): 10 (2016) - [j3]Yuting Ye, Jingyi Jessica Li
:
NMFP: a non-negative matrix factorization based preselection method to increase accuracy of identifying mRNA isoforms from RNA-seq data. BMC Genom. 17(S-1): 11 (2016) - 2014
- [j2]Alan P. Boyle
, Carlos L. Araya
, Cathleen Brdlik, Philip Cayting, Chao Cheng, Yong Cheng, Kathryn Gardner, LaDeana W. Hillier, Judith Janette, Lixia Jiang, Dionna Kasper
, Trupti Kawli, Pouya Kheradpour, Anshul Kundaje
, Jingyi Jessica Li
, Lijia Ma, Wei Niu
, E. Jay Rehm, Joel S. Rozowsky
, Matthew Slattery, Rebecca Spokony, Robert Terrell, Dionne Vafeados, Daifeng Wang, Peter Weisdepp, Yi-Chieh Wu, Dan Xie, Koon-Kiu Yan, Elise A. Feingold, Peter J. Good, Michael J. Pazin
, Haiyan Huang, Peter J. Bickel, Steven E. Brenner, Valerie Reinke, Robert H. Waterston, Mark Gerstein
, Kevin P. White, Manolis Kellis, Michael Snyder
:
Comparative analysis of regulatory information and circuits across distant species Open. Nat. 512(7515): 453-456 (2014) - 2012
- [j1]Qinghui Gao, Christine Ho, Yingmin Jia, Jingyi Jessica Li
, Haiyan Huang:
Biclustering of Linear Patterns In Gene Expression Data. J. Comput. Biol. 19(6): 619-631 (2012)
Coauthor Index
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last updated on 2024-08-05 20:25 CEST by the dblp team
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