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ORCIDJianyi Yang 0002
Person information
- affiliation: Shandong University, Qingdao, China
Other persons with the same name
- Jianyi Yang — disambiguation page
- Jianyi Yang 0001
![[0000-0002-4041-4211]](https://dblp.org/img/orcid-mark.12x12.png "0000-0002-4041-4211")
— University of Houston, TX, USA (and 1 more) - Jianyi Yang 0003 — Zhejiang University, Hangzhou, China
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2020 – today
- 2024
[j35]Zongyang Du, Zhenling Peng, Jianyi Yang:
RNA threading with secondary structure and sequence profile. Bioinform. 40(2) (2024)- [j34]Junhai Qi, Chenjie Feng, Yulin Shi, Jianyi Yang, Fa Zhang, Guojun Li, Renmin Han:
FP-Zernike: An Open-source Structural Database Construction Toolkit for Fast Structure Retrieval. Genom. Proteom. Bioinform. 22(1) (2024) - [j33]Hong Wei, Wenkai Wang, Zhenling Peng, Jianyi Yang:
Q-BioLiP: A Comprehensive Resource for Quaternary Structure-based Protein-ligand Interactions. Genom. Proteom. Bioinform. 22(1) (2024) - 2023
- [j32]Kun Zhu, Hong Su, Zhenling Peng, Jianyi Yang:
A unified approach to protein domain parsing with inter-residue distance matrix. Bioinform. 39(2) (2023) - [i1]Bintao He, Fa Zhang, Chenjie Feng, Jianyi Yang, Xin Gao, Renmin Han:
CryoAlign: feature-based method for global and local 3D alignment of EM density maps. CoRR abs/2309.09217 (2023) - 2022
- [j31]Zongyang Du, Zhenling Peng, Jianyi Yang:
Toward the assessment of predicted inter-residue distance. Bioinform. 38(4): 962-969 (2022) - [j30]Wenkai Wang, Zhenling Peng, Jianyi Yang:
Single-sequence protein structure prediction using supervised transformer protein language models. Nat. Comput. Sci. 2(12): 804-814 (2022) - [j29]Yajun Dai, Yang Li, Liping Wang, Zhenling Peng, Jianyi Yang:
On Monomeric and Multimeric Structures-Based Protein-Ligand Interactions. IEEE ACM Trans. Comput. Biol. Bioinform. 19(1): 569-574 (2022) - 2021
- [j28]Xingjian Chen, Lingjing Liu, Weitong Zhang, Jianyi Yang, Ka-Chun Wong:
Human host status inference from temporal microbiome changes via recurrent neural networks. Briefings Bioinform. 22(6) (2021) - [j27]Hong Su, Zhenling Peng, Jianyi Yang:
Recognition of small molecule-RNA binding sites using RNA sequence and structure. Bioinform. 37(1): 36-42 (2021) - [j26]Saisai Sun, Wenkai Wang, Zhenling Peng, Jianyi Yang:
RNA inter-nucleotide 3D closeness prediction by deep residual neural networks. Bioinform. 37(8): 1093-1098 (2021) - [j25]Lisha Ye, Peikun Wu, Zhenling Peng, Jianzhao Gao, Jian Liu, Jianyi Yang:
Improved estimation of model quality using predicted inter-residue distance. Bioinform. 37(21): 3752-3759 (2021) - [j24]Hong Wei, Boling Wang, Jianyi Yang, Jianzhao Gao:
RNA Flexibility Prediction With Sequence Profile and Predicted Solvent Accessibility. IEEE ACM Trans. Comput. Biol. Bioinform. 18(5): 2017-2022 (2021) - 2020
- [j23]Qi Wu, Zhenling Peng, Ivan Anishchenko, Qian Cong, David Baker, Jianyi Yang:
Protein contact prediction using metagenome sequence data and residual neural networks. Bioinform. 36(1): 41-48 (2020) - [j22]Zongyang Du, Shuo Pan, Qi Wu, Zhenling Peng, Jianyi Yang:
CATHER: a novel threading algorithm with predicted contacts. Bioinform. 36(7): 2119-2125 (2020)
2010 – 2019
- 2019
- [j21]Hong Su, Mengchen Liu, Saisai Sun, Zhenling Peng, Jianyi Yang:
Improving the prediction of protein-nucleic acids binding residues via multiple sequence profiles and the consensus of complementary methods. Bioinform. 35(6): 930-936 (2019) - [j20]Saisai Sun, Qi Wu, Zhenling Peng, Jianyi Yang:
Enhanced prediction of RNA solvent accessibility with long short-term memory neural networks and improved sequence profiles. Bioinform. 35(10): 1686-1691 (2019) - 2018
- [j19]Qiqige Wuyun, Wei Zheng, Zhenling Peng, Jianyi Yang:
A large-scale comparative assessment of methods for residue-residue contact prediction. Briefings Bioinform. 19(2): 219-230 (2018) - [j18]Runze Dong, Zhenling Peng, Yang Zhang, Jianyi Yang:
mTM-align: an algorithm for fast and accurate multiple protein structure alignment. Bioinform. 34(10): 1719-1725 (2018) - [j17]Qiaozhen Meng, Zhenling Peng, Jianyi Yang:
CoABind: a novel algorithm for Coenzyme A (CoA)- and CoA derivatives-binding residues prediction. Bioinform. 34(15): 2598-2604 (2018) - [j16]Zijuan Zhao, Zhenling Peng, Jianyi Yang:
Improving Sequence-Based Prediction of Protein-Peptide Binding Residues by Introducing Intrinsic Disorder and a Consensus Method. J. Chem. Inf. Model. 58(7): 1459-1468 (2018) - [j15]Runze Dong, Shuo Pan, Zhenling Peng, Yang Zhang, Jianyi Yang:
mTM-align: a server for fast protein structure database search and multiple protein structure alignment. Nucleic Acids Res. 46(Webserver-Issue): W380-W386 (2018) - [j14]Qi Wu, Zhenling Peng, Yang Zhang, Jianyi Yang:
COACH-D: improved protein-ligand binding sites prediction with refined ligand-binding poses through molecular docking. Nucleic Acids Res. 46(Webserver-Issue): W438-W442 (2018) - 2017
- [j13]Jiaqi Xia, Zhenling Peng, Dawei Qi, Hongbo Mu, Jianyi Yang:
An ensemble approach to protein fold classification by integration of template-based assignment and support vector machine classifier. Bioinform. 33(6): 863-870 (2017) - [j12]Qi Wu, Zu-Guo Yu, Jianyi Yang:
DLTree: efficient and accurate phylogeny reconstruction using the dynamical language method. Bioinform. 33(14): 2214-2215 (2017) - [j11]Yang Li, Jianyi Yang:
Structural and Sequence Similarity Makes a Significant Impact on Machine-Learning-Based Scoring Functions for Protein-Ligand Interactions. J. Chem. Inf. Model. 57(4): 1007-1012 (2017) - 2016
- [j10]Xiuzhen Hu, Qiwen Dong, Jianyi Yang, Yang Zhang:
Recognizing metal and acid radical ion-binding sites by integrating ab initio modeling with template-based transferals. Bioinform. 32(21): 3260-3269 (2016) - 2015
- [j9]Wallace K. B. Chan, Hongjiu Zhang, Jianyi Yang, Jeffrey R. Brender, Junguk Hur, Arzucan Özgür, Yang Zhang:
GLASS: a comprehensive database for experimentally validated GPCR-ligand associations. Bioinform. 31(18): 3035-3042 (2015) - [j8]Jianyi Yang, Yang Zhang:
I-TASSER server: new development for protein structure and function predictions. Nucleic Acids Res. 43(Webserver-Issue): W174-W181 (2015) - 2013
- [j7]Jianyi Yang, Ambrish Roy, Yang Zhang:
Protein-ligand binding site recognition using complementary binding-specific substructure comparison and sequence profile alignment. Bioinform. 29(20): 2588-2595 (2013) - [j6]Jianyi Yang, Ambrish Roy, Yang Zhang:
BioLiP: a semi-manually curated database for biologically relevant ligand-protein interactions. Nucleic Acids Res. 41(Database-Issue): 1096-1103 (2013) - 2012
- [j5]Ambrish Roy, Jianyi Yang, Yang Zhang:
COFACTOR: an accurate comparative algorithm for structure-based protein function annotation. Nucleic Acids Res. 40(Web-Server-Issue): 471-477 (2012) - 2011
- [c2]Jianyi Yang, Xin Chen:
A Consensus Approach to Predicting Protein Contact Map via Logistic Regression. ISBRA 2011: 136-147 - 2010
- [j4]Jianyi Yang, Zhen-Ling Peng, Xin Chen:
Prediction of protein structural classes for low-homology sequences based on predicted secondary structure. BMC Bioinform. 11(S-1): 9 (2010) - [j3]Zhen-Ling Peng, Jianyi Yang, Xin Chen:
An improved classification of G-protein-coupled receptors using sequence-derived features. BMC Bioinform. 11: 420 (2010) - [j2]Xin Chen, Jianyi Yang:
Constructing Consensus Genetic Maps in Comparative Analysis. J. Comput. Biol. 17(11): 1561-1573 (2010)
2000 – 2009
- 2008
- [j1]Jianyi Yang, Yu Zhou, Zu-Guo Yu, Vo Anh, Li-Qian Zhou:
Human Pol II promoter recognition based on primary sequences and free energy of dinucleotides. BMC Bioinform. 9 (2008) - [c1]Jianyi Yang, Zu-Guo Yu, Vo Anh:
Protein Structure Classification Based on Chaos Game Representation and Multifractal Analysis. ICNC (4) 2008: 665-669
Coauthor Index
aka: Zhenling Peng
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