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Matthew R. Pocock
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2020 – today
- 2022
- [j27]Katherine James
, Aoesha Alsobhe, Simon J. Cockell, Anil Wipat, Matthew R. Pocock:
Integration of probabilistic functional networks without an external Gold Standard. BMC Bioinform. 23(1): 302 (2022) - 2021
- [j26]Hasan Baig
, Pedro Fontanarossa
, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan
, Bryan Bartley, Shyam Bhakta, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno
, Thomas E. Gorochowski, Raik Grünberg
, Jihwan Lee
, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Logan Terry, Marta Vazquez Vilar
, Christopher A. Voigt, Anil Wipat, David Zong
, Zach Zundel, Jacob Beal
, Chris J. Myers:
Synthetic biology open language visual (SBOL Visual) version 2.3. J. Integr. Bioinform. 18(3) (2021) - 2020
- [j25]Hasan Baig
, Pedro Fontanarrosa
, Vishwesh Kulkarni, James Alastair McLaughlin, Prashant Vaidyanathan
, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta, Michael Bissell, Kevin Clancy, Robert Sidney Cox III, Ángel Goñi-Moreno
, Thomas E. Gorochowski, Raik Grünberg
, Augustin Luna, Curtis Madsen, Goksel Misirli, Tramy Nguyen, Nicolas Le Novère, Zachary Palchick, Matthew R. Pocock, Nicholas Roehner, Herbert M. Sauro, James Scott-Brown, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Marta Vazquez Vilar
, Christopher A. Voigt, Anil Wipat, David Zong
, Zach Zundel, Jacob Beal
, Chris J. Myers:
Synthetic biology open language visual (SBOL visual) version 2.2. J. Integr. Bioinform. 17(2-3) (2020)
2010 – 2019
- 2019
- [j24]Curtis Madsen, Ángel Goñi-Moreno, Umesh P
, Zachary Palchick, Nicholas Roehner, Christian Atallah, Bryan Bartley, Kiri Choi
, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg
, Chris Macklin, James Alastair McLaughlin
, Xianwei Meng, Tramy Nguyen, Matthew R. Pocock, Meher Samineni, James Scott-Brown
, Ysis Tarter, Michael Zhang, Zhen Zhang, Zach Zundel, Jacob Beal
, Michael Bissell, Kevin Clancy, John H. Gennari, Goksel Misirli, Chris J. Myers, Ernst Oberortner, Herbert M. Sauro, Anil Wipat
:
Synthetic Biology Open Language (SBOL) Version 2.3. J. Integr. Bioinform. 16(2) (2019) - [j23]Curtis Madsen, Ángel Goñi-Moreno, Zachary Palchick, Umesh P
, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Shyam Bhakta
, Mike Bissell, Kevin Clancy, Robert Sidney Cox III, Thomas E. Gorochowski, Raik Grünberg
, Augustin Luna, James Alastair McLaughlin
, Tramy Nguyen, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, James Scott-Brown
, John T. Sexton, Guy-Bart Stan, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal
, Anil Wipat
:
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.1. J. Integr. Bioinform. 16(2) (2019) - 2018
- [j22]Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin
, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Jacob Beal, Michael Bissell, Kiri Choi
, Kevin Clancy, Raik Grünberg
, Chris Macklin, Goksel Misirli
, Ernst Oberortner, Matthew R. Pocock, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari
, Chris J. Myers, Herbert M. Sauro, Anil Wipat
:
Synthetic Biology Open Language (SBOL) Version 2.2.0. J. Integr. Bioinform. 15(1) (2018) - [j21]Robert Sidney Cox III, Curtis Madsen, James Alastair McLaughlin
, Tramy Nguyen, Nicholas Roehner, Bryan Bartley, Swapnil Bhatia, Mike Bissell, Kevin Clancy, Thomas E. Gorochowski, Raik Grünberg
, Augustin Luna, Nicolas Le Novère, Matthew R. Pocock, Herbert M. Sauro, John T. Sexton, Guy-Bart Stan
, Jeffrey J. Tabor, Christopher A. Voigt, Zach Zundel, Chris J. Myers, Jacob Beal, Anil Wipat
:
Synthetic Biology Open Language Visual (SBOL Visual) Version 2.0. J. Integr. Bioinform. 15(1) (2018) - 2016
- [j20]Goksel Misirli
, Matteo Cavaliere
, William Waites
, Matthew R. Pocock, Curtis Madsen, Owen Gilfellon, Ricardo Honorato-Zimmer
, Paolo Zuliani, Vincent Danos, Anil Wipat
:
Annotation of rule-based models with formal semantics to enable creation, analysis, reuse and visualization. Bioinform. 32(6): 908-917 (2016) - [j19]Jacob Beal, Robert Sidney Cox III, Raik Grünberg
, James Alastair McLaughlin, Tramy Nguyen, Bryan Bartley, Michael Bissell, Kiri Choi
, Kevin Clancy, Chris Macklin, Curtis Madsen, Goksel Misirli
, Ernst Oberortner, Matthew R. Pocock, Nicholas Roehner, Meher Samineni, Michael Zhang, Zhen Zhang, Zach Zundel, John H. Gennari
, Chris J. Myers, Herbert M. Sauro, Anil Wipat
:
Synthetic Biology Open Language (SBOL) Version 2.1.0. J. Integr. Bioinform. 13(3) (2016) - 2015
- [j18]Bryan Bartley, Jacob Beal, Kevin Clancy, Goksel Misirli
, Nicholas Roehner, Ernst Oberortner, Matthew R. Pocock, Michael Bissell, Curtis Madsen, Tramy Nguyen, Zhen Zhang, John H. Gennari
, Chris J. Myers
, Anil Wipat, Herbert M. Sauro:
Synthetic Biology Open Language (SBOL) Version 2.0.0. J. Integr. Bioinform. 12(2) (2015) - 2013
- [j17]Goksel Misirli, Anil Wipat
, Joseph Mullen
, Katherine James, Matthew R. Pocock, Wendy Smith, Nick Allenby, Jennifer Hallinan:
BacillOndex: An Integrated Data Resource for Systems and Synthetic Biology. J. Integr. Bioinform. 10(2) (2013) - 2012
- [j16]Keith Flanagan, Sirintra Nakjang, Jennifer Hallinan, Colin Harwood, Robert P. Hirt
, Matthew R. Pocock, Anil Wipat
:
Microbase2.0: A Generic Framework for Computationally Intensive Bioinformatics Workflows in the Cloud. J. Integr. Bioinform. 9(2) (2012) - 2011
- [j15]Jochen Weile
, Matthew R. Pocock, Simon J. Cockell
, Phillip W. Lord
, James M. Dewar
, Eva-Maria Holstein, Darren J. Wilkinson
, David A. Lydall, Jennifer Hallinan, Anil Wipat
:
Customizable views on semantically integrated networks for systems biology. Bioinform. 27(9): 1299-1306 (2011) - 2010
- [j14]Toshiaki Katayama, Kazuharu Arakawa, Mitsuteru Nakao, Keiichiro Ono, Kiyoko F. Aoki-Kinoshita
, Yasunori Yamamoto, Atsuko Yamaguchi
, Shuichi Kawashima
, Hong-Woo Chun, Jan Aerts
, Bruno Aranda, Lord H. Barboza, Raoul Jean Pierre Bonnal
, Richard M. Bruskiewich, Jan Christian Bryne, José María Fernández
, Akira Funahashi
, Paul M. K. Gordon, Naohisa Goto, Andreas Groscurth, Alex Gutteridge
, Richard C. G. Holland
, Yoshinobu Kano
, Edward A. Kawas, Arnaud Kerhornou
, Eri Kibukawa, Akira R. Kinjo
, Michael Kuhn, Hilmar Lapp
, Heikki Lehväslaiho
, Hiroyuki Nakamura, Yasukazu Nakamura
, Tatsuya Nishizawa, Chikashi Nobata, Tamotsu Noguchi, Thomas M. Oinn, Shinobu Okamoto, Stuart Owen, Evangelos Pafilis, Matthew R. Pocock, Pjotr Prins
, René Ranzinger, Florian Reisinger, Lukasz Salwínski
, Mark J. Schreiber, Martin Senger, Yasumasa Shigemoto, Daron M. Standley, Hideaki Sugawara, Toshiyuki Tashiro, Oswaldo Trelles
, Rutger A. Vos
, Mark D. Wilkinson
, William S. York, Christian M. Zmasek
, Kiyoshi Asai, Toshihisa Takagi:
The DBCLS BioHackathon: standardization and interoperability for bioinformatics web services and workflows. J. Biomed. Semant. 1: 8 (2010) - [j13]Allyson L. Lister, Phillip W. Lord, Matthew R. Pocock, Anil Wipat:
Annotation of SBML models through rule-based semantic integration. J. Biomed. Semant. 1(S-1): S3 (2010) - [j12]Simon J. Cockell
, Jochen Weile
, Phillip W. Lord, Claire Wipat, Dmytro Andriychenko, Matthew R. Pocock, Darren J. Wilkinson, Malcolm Young, Anil Wipat
:
An integrated dataset for in silico drug discovery. J. Integr. Bioinform. 7(3) (2010) - [c3]Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew R. Pocock, Christopher J. Rawlings:
Analysis and Visualisation of RDF Resources in Ondex. SWAT4LS 2010 - [i1]Catherine Canevet, Artem Lysenko, Andrea Splendiani, Matthew R. Pocock, Christopher J. Rawlings:
Analysis and visualisation of RDF resources in Ondex. CoRR abs/1012.1661 (2010)
2000 – 2009
- 2009
- [j11]Allyson L. Lister
, Matthew R. Pocock, Morgan L. Taschuk
, Anil Wipat
:
Saint: a lightweight integration environment for model annotation. Bioinform. 25(22): 3026-3027 (2009) - [c2]Jennifer Hallinan, Matthew R. Pocock, Stephen G. Addinall, David A. Lydall, Anil Wipat:
Clustering incorporating shortest paths identifies relevant modules in functional interaction networks. CIBCB 2009: 228-236 - 2008
- [j10]Richard C. G. Holland
, Thomas A. Down, Matthew R. Pocock, Andreas Prlic
, David S. Huen
, Keith James, Sylvain Foisy, Andreas Dräger
, Andy Yates
, Michael L. Heuer, Mark J. Schreiber:
BioJava: an open-source framework for bioinformatics. Bioinform. 24(18): 2096-2097 (2008) - [j9]Peter Li
, Juan I. Castrillo, Giles Velarde, Ingo Wassink, Stian Soiland-Reyes
, Stuart Owen
, David Withers, Tom Oinn, Matthew R. Pocock, Carole A. Goble
, Stephen G. Oliver, Douglas B. Kell
:
Performing statistical analyses on quantitative data in Taverna workflows: An example using R and maxdBrowse to identify differentially-expressed genes from microarray data. BMC Bioinform. 9 (2008) - 2007
- [j8]Allyson L. Lister, Matthew R. Pocock, Anil Wipat:
Integration of constraints documented in SBML, SBO, and the SBML Manual facilitates validation of biological models. J. Integr. Bioinform. 4(3) (2007) - [j7]Yudong Sun, Anil Wipat
, Matthew R. Pocock, P. A. Lee, Keith Flanagan, J. T. Worthington:
Exploring Microbial Genome Sequences to Identify Protein Families on the Grid. IEEE Trans. Inf. Technol. Biomed. 11(4): 435-442 (2007) - 2006
- [j6]Thomas M. Oinn, Robert Mark Greenwood, Matthew Addis
, Mahmut Nedim Alpdemir, Justin Ferris, Kevin Glover
, Carole A. Goble
, Antoon Goderis, Duncan Hull
, Darren Marvin, Peter Li, Phillip W. Lord
, Matthew R. Pocock, Martin Senger, Robert Stevens, Anil Wipat, Chris Wroe:
Taverna: lessons in creating a workflow environment for the life sciences. Concurr. Comput. Pract. Exp. 18(10): 1067-1100 (2006) - [j5]Duncan Hull
, Katy Wolstencroft
, Robert Stevens, Carole A. Goble
, Matthew R. Pocock, Peter Li
, Tom Oinn:
Taverna: a tool for building and running workflows of services. Nucleic Acids Res. 34(Web-Server-Issue): 729-732 (2006) - 2005
- [c1]Yudong Sun, Anil Wipat, Matthew R. Pocock, Pete A. Lee, Paul Watson, Keith Flanagan, James T. Worthington:
A grid-based system for microbial genome comparison and analysis. CCGRID 2005: 977-984 - 2004
- [j4]Thomas M. Oinn, Matthew Addis
, Justin Ferris, Darren Marvin, Martin Senger, Robert Mark Greenwood, Tim Carver, Kevin Glover
, Matthew R. Pocock, Anil Wipat
, Peter Li
:
Taverna: a tool for the composition and enactment of bioinformatics workflows. Bioinform. 20(17): 3045-3054 (2004) - 2002
- [j3]Tim J. P. Hubbard, Daniel Barker, Ewan Birney
, Graham Cameron, Yuan Chen, Laura Clarke
, Tony Cox, James A. Cuff
, Val Curwen, Thomas A. Down, Richard Durbin
, Eduardo Eyras
, James G. R. Gilbert
, Martin Hammond, Lukasz Huminiecki
, Arek Kasprzyk, Heikki Lehväslaiho, Philip Lijnzaad
, Craig Melsopp, Emmanuel Mongin, Roger Pettett, Matthew R. Pocock, Simon C. Potter, Alistair G. Rust
, Esther Schmidt, Stephen M. J. Searle, Guy Slater
, James A. Smith
, William Spooner, Arne Stabenau, Jim Stalker, Elia Stupka
, Abel Ureta-Vidal, Imre Vastrik, Michele E. Clamp:
The Ensembl genome database project. Nucleic Acids Res. 30(1): 38-41 (2002) - 2000
- [j2]Matthew R. Pocock, Tim J. P. Hubbard:
A browser for expression data. Bioinform. 16(4): 402-403 (2000)
1990 – 1999
- 1998
- [j1]Matthew R. Pocock, Tim J. P. Hubbard, Ewan Birney
:
SPEM: a parser for EMBL style flat file database entries. Bioinform. 14(9): 823-824 (1998)
Coauthor Index
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