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ORCIDPatryk Orzechowski
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2020 – today
- 2024
[c22]Adam Sulek, Jakub Jonczyk, Patryk Orzechowski, Ahmed Abdeen Hamed, Marek Wodzinski
:
EsmTemp - Transfer Learning Approach for Predicting Protein Thermostability. ICCS (3) 2024: 187-194- [i11]Zack Goldblum, Zhongchuan Xu, Haoer Shi, Patryk Orzechowski, Jamaal Spence, Kathryn A. Davis, Brian Litt, Nishant Sinha, Joost B. Wagenaar:
Pennsieve: A Collaborative Platform for Translational Neuroscience and Beyond. CoRR abs/2409.10509 (2024) - 2022
- [j8]Mateusz Godzik, Jacek Dajda, Marek Kisiel-Dorohinicki, Aleksander Byrski, Leszek Rutkowski, Patryk Orzechowski, Joost B. Wagenaar, Jason H. Moore:
Applying autonomous hybrid agent-based computing to difficult optimization problems. J. Comput. Sci. 64: 101858 (2022) - [c21]Patryk Orzechowski, Pawel Renc, William G. La Cava, Jason H. Moore, Arkadiusz Sitek, Jaroslaw Was, Joost B. Wagenaar:
A comparative study of GP-based and state-of-the-art classifiers on a synthetic machine learning benchmark. GECCO Companion 2022: 276-279 - [c20]Pawel Jemiolo, Dawid Storman, Maria Mamica, Mateusz Szymkowski, Patryk Orzechowski:
Automated Affect and Emotion Recognition from Cardiovascular Signals - A Systematic Overview Of The Field. HICSS 2022: 1-10 - [i10]Mateusz Godzik, Jacek Dajda, Marek Kisiel-Dorohinicki, Aleksander Byrski, Leszek Rutkowski, Patryk Orzechowski, Joost B. Wagenaar, Jason H. Moore:
Applying Autonomous Hybrid Agent-based Computing to Difficult Optimization Problems. CoRR abs/2210.13205 (2022) - [i9]Pedro Henrique Ribeiro, Patryk Orzechowski, Joost B. Wagenaar, Jason H. Moore:
Benchmarking AutoML algorithms on a collection of synthetic classification problems. CoRR abs/2212.02704 (2022) - 2021
- [c19]Pawel Renc, Patryk Orzechowski, Aleksander Byrski, Jaroslaw Was, Jason H. Moore:
Rapid prototyping of evolution-driven biclustering methods in Julia. GECCO Companion 2021: 61-62 - [c18]Pawel Renc, Patryk Orzechowski, Aleksander Byrski, Jaroslaw Was, Jason H. Moore:
EBIC.JL: an efficient implementation of evolutionary biclustering algorithm in Julia. GECCO Companion 2021: 1540-1548 - [c17]Aleksandra Urbanczyk, Bartosz Nowak, Patryk Orzechowski, Jason H. Moore, Marek Kisiel-Dorohinicki, Aleksander Byrski:
Socio-cognitive Evolution Strategies. ICCS (2) 2021: 329-342 - [c16]William G. La Cava, Patryk Orzechowski, Bogdan Burlacu, Fabrício Olivetti de França, Marco Virgolin, Ying Jin, Michael Kommenda, Jason H. Moore:
Contemporary Symbolic Regression Methods and their Relative Performance. NeurIPS Datasets and Benchmarks 2021 - [i8]Pawel Renc, Patryk Orzechowski, Aleksander Byrski, Jaroslaw Was, Jason H. Moore:
EBIC.JL - an Efficient Implementation of Evolutionary Biclustering Algorithm in Julia. CoRR abs/2105.01196 (2021) - [i7]Patryk Orzechowski, Jason H. Moore:
Generative and reproducible benchmarks for comprehensive evaluation of machine learning classifiers. CoRR abs/2107.06475 (2021) - [i6]William G. La Cava, Patryk Orzechowski, Bogdan Burlacu, Fabrício Olivetti de França, Marco Virgolin, Ying Jin, Michael Kommenda, Jason H. Moore:
Contemporary Symbolic Regression Methods and their Relative Performance. CoRR abs/2107.14351 (2021) - 2020
- [c15]Trang T. Le, Hoyt Gong, Patryk Orzechowski, Elisabetta Manduchi, Jason H. Moore:
Expanding Polygenic Risk Scores to Include Automatic Genotype Encodings and Gene-gene Interactions. BIOINFORMATICS 2020: 79-84 - [c14]Patryk Orzechowski, Franciszek Magiera, Jason H. Moore:
Benchmarking Manifold Learning Methods on a Large Collection of Datasets. EuroGP 2020: 135-150 - [i5]Thomas Bartz-Beielstein, Carola Doerr, Jakob Bossek, Sowmya Chandrasekaran, Tome Eftimov, Andreas Fischbach, Pascal Kerschke, Manuel López-Ibáñez, Katherine M. Malan, Jason H. Moore, Boris Naujoks, Patryk Orzechowski, Vanessa Volz, Markus Wagner, Thomas Weise:
Benchmarking in Optimization: Best Practice and Open Issues. CoRR abs/2007.03488 (2020)
2010 – 2019
- 2019
- [j7]Elisabetta Manduchi, Patryk Orzechowski, Marylyn D. Ritchie, Jason H. Moore:
Exploration of a diversity of computational and statistical measures of association for genome-wide genetic studies. BioData Min. 12(1): 14:1-14:16 (2019) - [j6]Patryk Orzechowski, Jason H. Moore:
EBIC: an open source software for high-dimensional and big data analyses. Bioinform. 35(17): 3181-3183 (2019) - [c13]Patryk Orzechowski, Jason H. Moore:
EBIC: a scalable biclustering method for large scale data analysis. GECCO (Companion) 2019: 31-32 - [c12]Patryk Orzechowski, Jason H. Moore:
Strategies for improving performance of evolutionary biclustering algorithm EBIC. GECCO (Companion) 2019: 185-186 - [c11]Patryk Orzechowski, Jason H. Moore:
Mining a massive RNA-seq dataset with biclustering: are evolutionary approaches ready for big data? GECCO (Companion) 2019: 304-305 - 2018
- [j5]Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore:
EBIC: an evolutionary-based parallel biclustering algorithm for pattern discovery. Bioinform. 34(21): 3719-3726 (2018) - [j4]Patryk Orzechowski, Artur Panszczyk, Xiuzhen Huang, Jason H. Moore:
runibic: a Bioconductor package for parallel row-based biclustering of gene expression data. Bioinform. 34(24): 4302-4304 (2018) - [c10]Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore:
EBIC: a next-generation evolutionary-based parallel biclustering method. GECCO (Companion) 2018: 59-60 - [c9]Patryk Orzechowski, William G. La Cava, Jason H. Moore:
Where are we now?: a large benchmark study of recent symbolic regression methods. GECCO 2018: 1183-1190 - [c8]Brett K. Beaulieu-Jones, Patryk Orzechowski, Jason H. Moore:
Mapping patient trajectories using longitudinal extraction and deep learning in the MIMIC-III Critical Care Database. PSB 2018: 123-132 - [c7]Alena Orlenko, Jason H. Moore, Patryk Orzechowski, Randal S. Olson, Junmei Cairns, Pedro J. Caraballo, Richard M. Weinshilboum, Liewei Wang, Matthew K. Breitenstein:
Considerations for automated machine learning in clinical metabolic profiling: Altered homocysteine plasma concentration associated with metformin exposure. PSB 2018: 460-471 - [c6]Patryk Orzechowski, Adrian Horzyk, Janusz A. Starzyk, Jason H. Moore:
Retrieving Impressions from Semantic Memory Modeled with Associative Pulsing Neural Networks. SSCI 2018: 2060-2067 - [i4]Patryk Orzechowski, Moshe Sipper, Xiuzhen Huang, Jason H. Moore:
EBIC: an artificial intelligence-based parallel biclustering algorithm for pattern discovery. CoRR abs/1801.03039 (2018) - [i3]Patryk Orzechowski, William G. La Cava, Jason H. Moore:
Where are we now? A large benchmark study of recent symbolic regression methods. CoRR abs/1804.09331 (2018) - [i2]Patryk Orzechowski, Jason H. Moore:
EBIC: an open source software for high-dimensional and big data biclustering analyses. CoRR abs/1807.09932 (2018) - 2017
- [j3]Randal S. Olson, William G. La Cava, Patryk Orzechowski, Ryan J. Urbanowicz, Jason H. Moore:
PMLB: a large benchmark suite for machine learning evaluation and comparison. BioData Min. 10(1): 36:1-36:13 (2017) - [c5]Randal S. Olson, Moshe Sipper, William G. La Cava, Sharon Tartarone, Steven Vitale, Weixuan Fu, Patryk Orzechowski, Ryan J. Urbanowicz, John H. Holmes, Jason H. Moore:
A System for Accessible Artificial Intelligence. GPTP 2017: 121-134 - [i1]Randal S. Olson, William G. La Cava, Patryk Orzechowski, Ryan J. Urbanowicz, Jason H. Moore:
PMLB: A Large Benchmark Suite for Machine Learning Evaluation and Comparison. CoRR abs/1703.00512 (2017) - 2016
- [j2]Patryk Orzechowski, Krzysztof Boryczko:
Propagation-Based Biclustering Algorithm for Extracting Inclusion-Maximal Motifs. Comput. Informatics 35(2): 391-410 (2016) - [c4]Patryk Orzechowski, Krzysztof Boryczko:
Hybrid Biclustering Algorithms for Data Mining. EvoApplications (1) 2016: 156-168 - [c3]Artur Panszczyk, Patryk Orzechowski:
QtBiVis: a software toolbox for visual analysis of biclustering experiment. FedCSIS 2016: 1375-1378 - [c2]Patryk Orzechowski, Krzysztof Boryczko:
Text Mining with Hybrid Biclustering Algorithms. ICAISC (2) 2016: 102-113 - 2015
- [j1]Patryk Orzechowski, Krzysztof Boryczko:
Rough assessment of GPU capabilities for parallel PCC-based biclustering method applied to microarray data sets. Bio Algorithms Med Syst. 11(4): 243-248 (2015) - 2013
- [c1]Patryk Orzechowski:
Proximity Measures and Results Validation in Biclustering - A Survey. ICAISC (2) 2013: 206-217
Coauthor Index
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