![](https://dblp.org/img/logo.ua.320x120.png)
![](https://dblp.org/img/dropdown.dark.16x16.png)
![](https://dblp.org/img/peace.dark.16x16.png)
Остановите войну!
for scientists:
![search dblp search dblp](https://dblp.org/img/search.dark.16x16.png)
![search dblp](https://dblp.org/img/search.dark.16x16.png)
default search action
Jiajie Peng
Person information
Refine list
![note](https://dblp.org/img/note-mark.dark.12x12.png)
refinements active!
zoomed in on ?? of ?? records
view refined list in
export refined list as
2020 – today
- 2024
- [j43]Tao Wang, Han Shu, Jialu Hu
, Yongtian Wang, Jin Chen, Jiajie Peng
, Xuequn Shang:
Accurately deciphering spatial domains for spatially resolved transcriptomics with stCluster. Briefings Bioinform. 25(4) (2024) - [j42]Menghan Zhang, Jingru Wang, Wei Wang, Guang Yang, Jiajie Peng
:
Predicting cell-type specific disease genes of diabetes with the biological network. Comput. Biol. Medicine 169: 107849 (2024) - [j41]Tao Wang
, Zhihao Yan, Yiming Zhang, Zhuofei Lou
, Xiaozhu Zheng, Duoduo Mai, Yongtian Wang, Xuequn Shang
, Bing Xiao, Jiajie Peng, Jin Chen:
postGWAS: A web server for deciphering the causality post the genome-wide association studies. Comput. Biol. Medicine 171: 108108 (2024) - [c23]Xi Zeng, Xiaotian Hao, Hongyao Tang, Zhentao Tang, Shaoqing Jiao, Dazhi Lu, Jiajie Peng:
Designing Biological Sequences without Prior Knowledge Using Evolutionary Reinforcement Learning. AAAI 2024: 383-391 - [i10]Shujian Jiao, Bingxuan Li, Lei Wang, Xiaojin Zhang, Wei Chen, Jiajie Peng, Zhongyu Wei:
Beyond ESM2: Graph-Enhanced Protein Sequence Modeling with Efficient Clustering. CoRR abs/2404.15805 (2024) - [i9]Jingcong Liang, Junlong Wang, Xinyu Zhai, Yungui Zhuang, Yiyang Zheng, Xin Xu, Xiandong Ran, Xiaozheng Dong, Honghui Rong, Yanlun Liu, Hao Chen, Yuhan Wei, Donghai Li, Jiajie Peng, Xuanjing Huang, Chongde Shi, Yansong Feng, Yun Song, Zhongyu Wei:
Overview of the CAIL 2023 Argument Mining Track. CoRR abs/2406.14503 (2024) - [i8]Yihang Xiao, Jinyi Liu, Yan Zheng, Xiaohan Xie, Jianye Hao, Mingzhi Li, Ruitao Wang, Fei Ni, Yuxiao Li, Jintian Luo, Shaoqing Jiao, Jiajie Peng:
CellAgent: An LLM-driven Multi-Agent Framework for Automated Single-cell Data Analysis. CoRR abs/2407.09811 (2024) - 2023
- [j40]Yongtian Wang
, Xinmeng Liu, Yewei Shen, Xuerui Song, Tao Wang
, Xuequn Shang, Jiajie Peng
:
Collaborative deep learning improves disease-related circRNA prediction based on multi-source functional information. Briefings Bioinform. 24(2) (2023) - [j39]Wei Chen
, Zhiwei Li, Hongyi Fang, Qianyuan Yao, Cheng Zhong, Jianye Hao, Qi Zhang, Xuanjing Huang, Jiajie Peng
, Zhongyu Wei:
A benchmark for automatic medical consultation system: frameworks, tasks and datasets. Bioinform. 39(1) (2023) - [j38]Wei Chen
, Cheng Zhong, Jiajie Peng, Zhongyu Wei:
DxFormer: a decoupled automatic diagnostic system based on decoder-encoder transformer with dense symptom representations. Bioinform. 39(1) (2023) - [j37]Tao Wang
, Jinjin Yang, Yifu Xiao, Jingru Wang, Yuxian Wang, Xi Zeng, Yongtian Wang, Jiajie Peng
:
DFinder: a novel end-to-end graph embedding-based method to identify drug-food interactions. Bioinform. 39(1) (2023) - [c22]Jingqi Wang, Jiajie Peng, Zhiming Liu, Hengjun Zhao:
HQProtoPNet: An Evidence-Based Model for Interpretable Image Recognition. IJCNN 2023: 1-8 - [i7]Zhijie Bao, Wei Chen, Shengze Xiao, Kuang Ren, Jiaao Wu, Cheng Zhong, Jiajie Peng, Xuanjing Huang, Zhongyu Wei:
DISC-MedLLM: Bridging General Large Language Models and Real-World Medical Consultation. CoRR abs/2308.14346 (2023) - 2022
- [j36]Wei Wang, Ruijiang Han, Menghan Zhang, Yuxian Wang, Tao Wang
, Yongtian Wang, Xuequn Shang, Jiajie Peng:
A network-based method for brain disease gene prediction by integrating brain connectome and molecular network. Briefings Bioinform. 23(1) (2022) - [j35]Tao Wang
, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng:
Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation. Briefings Bioinform. 23(1) (2022) - [j34]Tao Wang
, Yongzhuang Liu, Quanwei Yin, Jiaquan Geng, Jin Chen, Xipeng Yin, Yongtian Wang, Xuequn Shang, Chunwei Tian, Yadong Wang, Jiajie Peng:
Correction to: Enhancing discoveries of molecular QTL studies with small sample size using summary statistic imputation. Briefings Bioinform. 23(3) (2022) - [j33]Caiwei Zhen
, Yuxian Wang, Jiaquan Geng, Lu Han, Jingyi Li, Jinghao Peng, Tao Wang
, Jianye Hao, Xuequn Shang, Zhongyu Wei, Peican Zhu
, Jiajie Peng:
A review and performance evaluation of clustering frameworks for single-cell Hi-C data. Briefings Bioinform. 23(6) (2022) - [j32]Cheng Zhong
, Kangenbei Liao, Wei Chen
, Qianlong Liu, Baolin Peng, Xuanjing Huang, Jiajie Peng, Zhongyu Wei:
Hierarchical reinforcement learning for automatic disease diagnosis. Bioinform. 38(16): 3995-4001 (2022) - [j31]Jiajie Peng, Jinjin Yang, D. Vijay Anand
, Xuequn Shang, Kelin Xia:
Flexibility and rigidity index for chromosome packing, flexibility and dynamics analysis. Frontiers Comput. Sci. 16(4): 164902 (2022) - [c21]Ruijiang Han, Wei Wang, Yuxi Long, Jiajie Peng:
Deep Representation Debiasing via Mutual Information Minimization and Maximization (Student Abstract). AAAI 2022: 12965-12966 - [c20]Tao Wang, Hui Zhao, Yifu Xiao, Hanzi Yang, Xipeng Yin, Yongtian Wang, Bing Xiao, Xuequn Shang, Jiajie Peng:
Discovering eQTL Regulatory Patterns Through eQTLMotif. BIBM 2022: 130-135 - [c19]Tao Wang, Hengbo Xu, Ranye Zhang, Yifu Xiao, Jiajie Peng, Xuequn Shang:
Hypergraph-based Gene Ontology Embedding for Disease Gene Prediction. BIBM 2022: 2424-2430 - [c18]Xinyi Mou, Zhongyu Wei, Changjian Jiang, Jiajie Peng:
A Two Stage Adaptation Framework for Frame Detection via Prompt Learning. COLING 2022: 2968-2978 - [i6]Wei Chen, Zhiwei Li, Hongyi Fang, Qianyuan Yao, Cheng Zhong, Jianye Hao, Qi Zhang, Xuanjing Huang, Jiajie Peng, Zhongyu Wei:
A Benchmark for Automatic Medical Consultation System: Frameworks, Tasks and Datasets. CoRR abs/2204.08997 (2022) - [i5]Wei Chen, Cheng Zhong, Jiajie Peng, Zhongyu Wei:
DxFormer: A Decoupled Automatic Diagnostic System Based on Decoder-Encoder Transformer with Dense Symptom Representations. CoRR abs/2205.03755 (2022) - 2021
- [j30]Jiajie Peng
, Hansheng Xue
, Zhongyu Wei, Idil Tuncali
, Jianye Hao, Xuequn Shang:
Integrating multi-network topology for gene function prediction using deep neural networks. Briefings Bioinform. 22(2): 2096-2105 (2021) - [j29]Tianyi Zhao, Yang Hu, Linda R. Valsdottir, Tianyi Zang, Jiajie Peng:
Identifying drug-target interactions based on graph convolutional network and deep neural network. Briefings Bioinform. 22(2): 2141-2150 (2021) - [j28]Jiajie Peng
, Yuxian Wang, Jiaojiao Guan, Jingyi Li, Ruijiang Han
, Jianye Hao, Zhongyu Wei, Xuequn Shang:
An end-to-end heterogeneous graph representation learning-based framework for drug-target interaction prediction. Briefings Bioinform. 22(5) (2021) - [j27]Tianyi Zhao, Jinxin Liu, Xi Zeng, Wei Wang, Sheng Li, Tianyi Zang, Jiajie Peng, Yang Yang:
Prediction and collection of protein-metabolite interactions. Briefings Bioinform. 22(5) (2021) - [j26]Jiajie Peng, Lu Han
, Xuequn Shang:
A novel method for predicting cell abundance based on single-cell RNA-seq data. BMC Bioinform. 22-S(9): 281 (2021) - [j25]Tao Wang
, Yongzhuang Liu, Junpeng Ruan, Xianjun Dong, Yadong Wang, Jiajie Peng:
A pipeline for RNA-seq based eQTL analysis with automated quality control procedures. BMC Bioinform. 22-S(9): 403 (2021) - [j24]Tianyi Zhao
, Shuxuan Lyu
, Guilin Lu, Liran Juan, Xi Zeng, Zhongyu Wei, Jianye Hao, Jiajie Peng
:
SC2disease: a manually curated database of single-cell transcriptome for human diseases. Nucleic Acids Res. 49(Database-Issue): D1413-D1419 (2021) - [c17]Shuhui Liu
, Yupei Zhang, Jiajie Peng, Xuequn Shang:
DCAE: Selecting Discriminative Genes on Single-cell RNA-seq Data for Cell-type Quantification. BIBM 2021: 1865-1872 - [c16]Tao Wang
, Zhiyuan Shao, Yifu Xiao, Xuchao Zhang, Yitian Chen, Binze Shi, Siyu Chen, Yuxian Wang, Jiajie Peng, Xuequn Shang:
Predicting Hepatoma-Related Genes Based on Representation Learning of PPI network and Gene Ontology Annotations. BIBM 2021: 1892-1898 - [c15]Jiwen Zhang, Zhongyu Wei, Jianqing Fan, Jiajie Peng:
Curriculum Learning for Vision-and-Language Navigation. NeurIPS 2021: 13328-13339 - [i4]Jiwen Zhang, Zhongyu Wei, Jianqing Fan, Jiajie Peng:
Curriculum Learning for Vision-and-Language Navigation. CoRR abs/2111.07228 (2021) - [i3]Cong Wang, Tianpei Yang, Jianye Hao, Yan Zheng, Hongyao Tang, Fazl Barez, Jinyi Liu, Jiajie Peng, Haiyin Piao, Zhixiao Sun:
ED2: An Environment Dynamics Decomposition Framework for World Model Construction. CoRR abs/2112.02817 (2021) - 2020
- [j23]Jiajie Peng
, Junya Lu, Donghee Hoh
, Ayesha S. Dina, Xuequn Shang, David M. Kramer, Jin Chen
:
Identifying emerging phenomenon in long temporal phenotyping experiments. Bioinform. 36(2): 568-577 (2020) - [j22]Tianyi Zhao
, Yang Hu
, Jiajie Peng
, Liang Cheng
, Pier Luigi Martelli:
DeepLGP: a novel deep learning method for prioritizing lncRNA target genes. Bioinform. 36(16): 4466-4472 (2020) - [j21]Jiajie Peng
, Jingyi Li, Xuequn Shang:
A learning-based method for drug-target interaction prediction based on feature representation learning and deep neural network. BMC Bioinform. 21-S(13): 394 (2020) - [j20]Leilei Liu, Xianglei Zhu, Yi Ma, Haiyin Piao
, Yaodong Yang, Xiaotian Hao, Yue Fu, Li Wang, Jiajie Peng
:
Combining sequence and network information to enhance protein-protein interaction prediction. BMC Bioinform. 21-S(16): 537 (2020) - [j19]Jiajie Peng
, Linjiao Zhu, Yadong Wang, Jin Chen:
Mining Relationships among Multiple Entities in Biological Networks. IEEE ACM Trans. Comput. Biol. Bioinform. 17(3): 769-776 (2020) - [c14]Tianpei Yang, Jianye Hao, Zhaopeng Meng, Zongzhang Zhang, Yujing Hu, Yingfeng Chen, Changjie Fan, Weixun Wang, Zhaodong Wang, Jiajie Peng:
Efficient Deep Reinforcement Learning through Policy Transfer. AAMAS 2020: 2053-2055 - [c13]Yanjian Zhang, Qin Chen, Yiteng Zhang, Zhongyu Wei, Yixu Gao, Jiajie Peng, Zengfeng Huang
, Weijian Sun, Xuanjing Huang:
Automatic Term Name Generation for Gene Ontology: Task and Dataset. EMNLP (Findings) 2020: 4705-4710 - [c12]Tianpei Yang, Jianye Hao, Zhaopeng Meng, Zongzhang Zhang, Yujing Hu, Yingfeng Chen, Changjie Fan, Weixun Wang, Wulong Liu, Zhaodong Wang
, Jiajie Peng:
Efficient Deep Reinforcement Learning via Adaptive Policy Transfer. IJCAI 2020: 3094-3100 - [i2]Tianpei Yang, Jianye Hao, Zhaopeng Meng, Zongzhang Zhang, Weixun Wang, Yujing Hu, Yingfeng Chen, Changjie Fan, Zhaodong Wang, Jiajie Peng:
Efficient Deep Reinforcement Learning through Policy Transfer. CoRR abs/2002.08037 (2020)
2010 – 2019
- 2019
- [j18]Jiajie Peng
, Weiwei Hui, Qianqian Li, Bolin Chen, Jianye Hao, Qinghua Jiang, Xuequn Shang, Zhongyu Wei:
A learning-based framework for miRNA-disease association identification using neural networks. Bioinform. 35(21): 4364-4371 (2019) - [j17]Jiajie Peng
, Xiaoyu Wang, Xuequn Shang:
Combining gene ontology with deep neural networks to enhance the clustering of single cell RNA-Seq data. BMC Bioinform. 20-S(8): 284:1-284:12 (2019) - [j16]Yongtian Wang, Liran Juan, Jiajie Peng
, Tianyi Zang, Yadong Wang:
LncDisAP: a computation model for LncRNA-disease association prediction based on multiple biological datasets. BMC Bioinform. 20-S(16): 582:1-582:11 (2019) - [j15]Jiajie Peng
, Guilin Lu, Hansheng Xue
, Tao Wang
, Xuequn Shang:
TS-GOEA: a web tool for tissue-specific gene set enrichment analysis based on gene ontology. BMC Bioinform. 20-S(18): 572:1-572:7 (2019) - [j14]Yongtian Wang, Liran Juan, Jiajie Peng
, Tianyi Zang, Yadong Wang:
Prioritizing candidate diseases-related metabolites based on literature and functional similarity. BMC Bioinform. 20-S(18): 574:1-574:11 (2019) - [j13]Hansheng Xue
, Jiajie Peng
, Xuequn Shang:
Predicting disease-related phenotypes using an integrated phenotype similarity measurement based on HPO. BMC Syst. Biol. 13-S(2): 34:1-34:12 (2019) - [c11]Hansheng Xue, Jiajie Peng, Xuequn Shang:
Towards Gene Function Prediction via Multi-Networks Representation Learning. AAAI 2019: 10069-10070 - [c10]Leilei Liu, Yi Ma, Xianglei Zhu, Yaodong Yang, Xiaotian Hao, Li Wang, Jiajie Peng:
Integrating Sequence and Network Information to Enhance Protein-Protein Interaction Prediction Using Graph Convolutional Networks. BIBM 2019: 1762-1768 - [c9]Jiajie Peng, Lu Han, Xuequn Shang:
A deconvolution method for predicting cell abundance based on single cell RNA-seq data. BIBM 2019: 1769-1773 - [c8]Hansheng Xue
, Jiajie Peng, Jiying Li, Xuequn Shang:
Integrating Multi-Network Topology via Deep Semi-supervised Node Embedding. CIKM 2019: 2117-2120 - 2018
- [j12]Jiajie Peng
, Weiwei Hui, Xuequn Shang:
Measuring phenotype-phenotype similarity through the interactome. BMC Bioinform. 19-S(5): 65-77 (2018) - [j11]Jiajie Peng
, Xuanshuo Zhang, Weiwei Hui, Junya Lu, Qianqian Li, Shuhui Liu, Xuequn Shang:
Improving the measurement of semantic similarity by combining gene ontology and co-functional network: a random walk based approach. BMC Syst. Biol. 12(S-2): 109-116 (2018) - [c7]Tao Wang, Jiajie Peng, Yadong Wang, Jin Chen:
Identifying Representative Network Motifs for Inferring Higher-order Structure of Biological Networks. BIBM 2018: 149-156 - [c6]Yongtian Wang, Liran Juan, Jiajie Peng, Tianyi Zang, Yadong Wang:
Predicting candidate disease-related lncRNAs based on network random walk. BIBM 2018: 524-531 - [c5]Jiajie Peng, Guilin Lu, Hansheng Xue
, Tao Wang
, Xuequn Shang:
TSGOE: A web tool for tissue-specific gene ontology enrichment. BIBM 2018: 1266-1269 - [i1]Hansheng Xue, Jiajie Peng, Xuequn Shang:
Deep Feature Learning of Multi-Network Topology for Node Classification. CoRR abs/1809.02394 (2018) - 2017
- [j10]Jiajie Peng
, Qianqian Li, Xuequn Shang:
Investigations on factors influencing HPO-based semantic similarity calculation. J. Biomed. Semant. 8-S(1): 61-69 (2017) - [j9]Jiajie Peng
, Honggang Wang, Junya Lu, Weiwei Hui, Yadong Wang, Xuequn Shang:
Identifying term relations cross different gene ontology categories. BMC Bioinform. 18(16): 67-74 (2017) - [j8]Jiajie Peng, Hansheng Xue
, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen:
A novel method to measure the semantic similarity of HPO terms. Int. J. Data Min. Bioinform. 17(2): 173-188 (2017) - [c4]Jiajie Peng, Weiwei Hui, Xuequn Shang:
Measuring phenotype-phenotype similarity through the interactome. BIBM 2017: 1674-1677 - 2016
- [j7]Yongzhuang Liu, Jian Liu, Jianguo Lu, Jiajie Peng
, Liran Juan, Xiaolin Zhu
, Bingshan Li, Yadong Wang:
Joint detection of copy number variations in parent-offspring trios. Bioinform. 32(8): 1130-1137 (2016) - [j6]Jiajie Peng
, Tao Wang
, Jixuan Wang, Yadong Wang, Jin Chen
:
Extending gene ontology with gene association networks. Bioinform. 32(8): 1185-1194 (2016) - [c3]Jiajie Peng, Hansheng Xue
, Yukai Shao, Xuequn Shang, Yadong Wang, Jin Chen:
Measuring phenotype semantic similarity using Human Phenotype Ontology. BIBM 2016: 763-766 - [c2]Jiajie Peng, Qianqian Li, Bolin Chen, Jialu Hu, Xuequn Shang:
Analyzing factors involved in the HPO-based semantic similarity calculation. BIBM 2016: 1653-1656 - 2015
- [j5]Jiajie Peng
, Sahra Uygun
, Taehyong Kim, Yadong Wang, Seung Y. Rhee, Jin Chen:
Measuring semantic similarities by combining gene ontology annotations and gene co-function networks. BMC Bioinform. 16: 44:1-44:14 (2015) - [j4]Qinghua Jiang, Jixuan Wang, Xiaoliang Wu, Rui Ma, Tianjiao Zhang
, Shuilin Jin, Zhijie Han, Renjie Tan
, Jiajie Peng
, Guiyou Liu, Yu Li, Yadong Wang:
LncRNA2Target: a database for differentially expressed genes after lncRNA knockdown or overexpression. Nucleic Acids Res. 43(Database-Issue): 193-196 (2015) - [c1]Jiajie Peng, Hongxiang Li, Yadong Wang, Jin Chen:
A web tool for measuring gene semantic similarities by combining gene ontology and gene co-function networks. BCB 2015: 678-679 - 2014
- [j3]Jiajie Peng
, Yadong Wang, Jin Chen:
Towards integrative gene functional similarity measurement. BMC Bioinform. 15(S-2): S5 (2014) - [j2]Jiajie Peng
, Hongxiang Li, Qinghua Jiang, Yadong Wang, Jin Chen:
An integrative approach for measuring semantic similarities using gene ontology. BMC Syst. Biol. 8(S-5): S8 (2014) - 2013
- [j1]Jiajie Peng
, Jin Chen, Yadong Wang:
Identifying cross-category relations in gene ontology and constructing genome-specific term association networks. BMC Bioinform. 14(S-2): S15 (2013)
Coauthor Index
![](https://dblp.org/img/cog.dark.24x24.png)
manage site settings
To protect your privacy, all features that rely on external API calls from your browser are turned off by default. You need to opt-in for them to become active. All settings here will be stored as cookies with your web browser. For more information see our F.A.Q.
Unpaywalled article links
Add open access links from to the list of external document links (if available).
Privacy notice: By enabling the option above, your browser will contact the API of unpaywall.org to load hyperlinks to open access articles. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Unpaywall privacy policy.
Archived links via Wayback Machine
For web page which are no longer available, try to retrieve content from the of the Internet Archive (if available).
Privacy notice: By enabling the option above, your browser will contact the API of archive.org to check for archived content of web pages that are no longer available. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Internet Archive privacy policy.
Reference lists
Add a list of references from ,
, and
to record detail pages.
load references from crossref.org and opencitations.net
Privacy notice: By enabling the option above, your browser will contact the APIs of crossref.org, opencitations.net, and semanticscholar.org to load article reference information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the Crossref privacy policy and the OpenCitations privacy policy, as well as the AI2 Privacy Policy covering Semantic Scholar.
Citation data
Add a list of citing articles from and
to record detail pages.
load citations from opencitations.net
Privacy notice: By enabling the option above, your browser will contact the API of opencitations.net and semanticscholar.org to load citation information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the OpenCitations privacy policy as well as the AI2 Privacy Policy covering Semantic Scholar.
OpenAlex data
Load additional information about publications from .
Privacy notice: By enabling the option above, your browser will contact the API of openalex.org to load additional information. Although we do not have any reason to believe that your call will be tracked, we do not have any control over how the remote server uses your data. So please proceed with care and consider checking the information given by OpenAlex.
last updated on 2024-08-16 18:28 CEST by the dblp team
all metadata released as open data under CC0 1.0 license
see also: Terms of Use | Privacy Policy | Imprint