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Journal Articles
- 2024
[j10]Chaokai Zhang, Lara M. Bartels
, Adam Clansey, Julian Kloiber, Daniel Bondi, Paul van Donkelaar, Lyndia Wu, Alexander Rauscher, Songbai Ji:
A computational pipeline towards large-scale and multiscale modeling of traumatic axonal injury. Comput. Biol. Medicine 171: 108109 (2024)- [j9]Nan Lin, Gregory Tierney, Songbai Ji:
Effect of Impact Kinematic Filters on Brain Strain Responses in Contact Sports. IEEE Trans. Biomed. Eng. 71(9): 2781-2788 (2024) - 2022
- [j8]Songbai Ji, Wei Zhao:
Displacement voxelization to resolve mesh-image mismatch: Application in deriving dense white matter fiber strains. Comput. Methods Programs Biomed. 213: 106528 (2022) - 2021
- [j7]Yunliang Cai, Shaoju Wu, Xiaoyao Fan, Jonathan Olson, Linton T. Evans, S. Scott Lollis, Sohail K. Mirza, Keith D. Paulsen, Songbai Ji:
A level-wise spine registration framework to account for large pose changes. Int. J. Comput. Assist. Radiol. Surg. 16(6): 943-953 (2021) - 2017
- [j6]William W. Lytton, Jeff Arle, Georgiy V. Bobashev, Songbai Ji, Tara L. Klassen, Vasilis Z. Marmarelis, James S. Schwaber, Mohamed A. Sherif, Terence D. Sanger:
Multiscale modeling in the clinic: diseases of the brain and nervous system. Brain Informatics 4(4): 219-230 (2017) - 2015
- [j5]Songbai Ji, Xiaoyao Fan, Keith D. Paulsen, David W. Roberts, Sohail K. Mirza, S. Scott Lollis:
Intraoperative CT as a registration benchmark for intervertebral motion compensation in image-guided open spinal surgery. Int. J. Comput. Assist. Radiol. Surg. 10(12): 2009-2020 (2015) - [j4]Songbai Ji, Xiaoyao Fan, Keith D. Paulsen, David W. Roberts, Sohail K. Mirza, S. Scott Lollis:
Patient Registration Using Intraoperative Stereovision in Image-guided Open Spinal Surgery. IEEE Trans. Biomed. Eng. 62(9): 2177-2186 (2015) - 2014
- [j3]Songbai Ji, Xiaoyao Fan, David W. Roberts, Alex Hartov, Keith D. Paulsen:
Cortical surface shift estimation using stereovision and optical flow motion tracking via projection image registration. Medical Image Anal. 18(7): 1169-1183 (2014) - 2009
- [j2]Songbai Ji, David W. Roberts, Alex Hartov, Keith D. Paulsen:
Brain-skull contact boundary conditions in an inverse computational deformation model. Medical Image Anal. 13(4): 659-672 (2009) - [j1]Songbai Ji, Alex Hartov, David W. Roberts, Keith D. Paulsen:
Data assimilation using a gradient descent method for estimation of intraoperative brain deformation. Medical Image Anal. 13(5): 744-756 (2009)
Conference and Workshop Papers
- 2024
- [c39]Xihan Ma, Xiao Zhang, Yang Wang, Christopher J. Nycz, Arno Sungarian, Songbai Ji, Haichong K. Zhang:
Feasibility of Pointcloud-based Ultrasound-CT Registration towards Automated, Robot-Assisted Image-Guidance in Spine Surgery*. ISMR 2024: 1-7 - 2023
- [c38]Ryan B. Duke, Xiaoyao Fan, William R. Warner, Steven P. Baltic, Kristen Chen, Linton T. Evans, Songbai Ji, Sohail K. Mirza, Keith D. Paulsen:
Automated localization of mini-screw fiducials in spine CT scans. Medical Imaging: Image-Guided Procedures 2023 - [c37]William R. Warner, Xiaoyao Fan, Ryan B. Duke, Kristen L. Chen, Haley Stoner, Chen Li, Shaoju Wu, Songbai Ji, Sohail K. Mirza, Keith D. Paulsen:
Towards accounting for intraoperative spine motion: a simulation study of registration between stereovision surfaces. Medical Imaging: Image-Guided Procedures 2023 - 2022
- [c36]Ryan B. Duke, Xiaoyao Fan, Songbai Ji, Sohail K. Mirza, Keith D. Paulsen:
Video data acquisition accuracy for hand-held stereovision in image-guided surgery. Medical Imaging: Image-Guided Procedures 2022 - [c35]William R. Warner, Xiaoyao Fan, Ryan B. Duke, Tahsin M. Khan, Songbai Ji, Steven P. Baltic, Sohail K. Mirza, Keith D. Paulsen:
Preoperative-to-interoperative shift in spine pose measured as change in lordosis Cobb angle and its effect on navigational accuracy. Medical Imaging: Image-Guided Procedures 2022 - 2021
- [c34]Ryan B. Duke, Xiaoyao Fan, Songbai Ji, Sohail K. Mirza, Keith D. Paulsen:
Semi-automated calibration of a hand-held stereovision system using a tracked calibration frame for image guided surgery. Medical Imaging: Image-Guided Procedures 2021 - [c33]Xiaoyao Fan, Ryan B. Duke, Songbai Ji, Sohail K. Mirza, Keith D. Paulsen:
Stereovision surface stitching for image updating in open spine surgery. Medical Imaging: Image-Guided Procedures 2021 - [c32]Shaoju Wu, Yunliang Cai, Xiaoyao Fan, Sohail K. Mirza, Keith D. Paulsen, Songbai Ji:
A vertebral level-wise data augmentation scheme for segmentation via deep learning. Medical Imaging: Image Processing 2021 - 2020
- [c31]Xiaoyao Fan, Maxwell S. Durtschi, Chen Li, Linton T. Evans, Songbai Ji, Yunliang Cai, Sohail K. Mirza, Keith D. Paulsen:
Stereovision-updated image guidance in multi-level open spine surgery: short vs. long exposure. Medical Imaging: Image-Guided Procedures 2020: 1131529 - 2019
- [c30]Xiaoyao Fan, Maxwell S. Durtschi, Chen Li, Songbai Ji, Sohail K. Mirza, Keith D. Paulsen:
Calibration of a hand-held stereovision system for image-guided spinal surgery. Medical Imaging: Image-Guided Procedures 2019: 109511X - 2017
- [c29]Xiaoyao Fan, David W. Roberts, Jonathan D. Olson, Songbai Ji, Keith D. Paulsen:
Automatic intraoperative fiducial-less patient registration using cortical surface. Medical Imaging: Image-Guided Procedures 2017: 101352I - 2016
- [c28]Yunliang Cai, Songbai Ji:
Combining Deep Learning Networks with Permutation Tests to Predict Traumatic Brain Injury Outcome. BrainLes@MICCAI 2016: 259-270 - [c27]Yunliang Cai, Jonathan D. Olson, Xiaoyao Fan, Linton T. Evans, Keith D. Paulsen, David W. Roberts, Sohail K. Mirza, S. Scott Lollis, Songbai Ji:
Automatic geometric rectification for patient registration in image-guided spinal surgery. Medical Imaging: Image-Guided Procedures 2016: 97860E - [c26]Xiaoyao Fan, Songbai Ji, Jonathan D. Olson, David W. Roberts, Alex Hartov, Keith D. Paulsen:
Image updating for brain deformation compensation in tumor resection. Medical Imaging: Image-Guided Procedures 2016: 97862A - 2015
- [c25]Songbai Ji, Xiaoyao Fan, Jonathan D. Olson, Linton T. Evans, Keith D. Paulsen, David W. Roberts, Sohail K. Mirza, S. Scott Lollis:
Patient Registration via Topologically Encoded Depth Projection Images in Spine Surgery. CSI@MICCAI 2015: 27-37 - [c24]Xiaoyao Fan, Songbai Ji, David W. Roberts, Keith D. Paulsen:
Localizing and tracking electrodes using stereovision in epilepsy cases. Medical Imaging: Image-Guided Procedures 2015: 94150G - 2014
- [c23]Songbai Ji, Xiaoyao Fan, David W. Roberts, Keith D. Paulsen:
Efficient Stereo Image Geometrical Reconstruction at Arbitrary Camera Settings from a Single Calibration. MICCAI (1) 2014: 440-447 - [c22]Timothy J. Schaewe, Xiaoyao Fan, Songbai Ji, David W. Roberts, Keith D. Paulsen, David A. Simon:
Integration of intraoperative stereovision imaging for brain shift visualization during image-guided cranial procedures. Medical Imaging: Image-Guided Procedures 2014: 90360X - [c21]Songbai Ji, Xiaoyao Fan, David W. Roberts, Keith D. Paulsen:
Intraoperative measurement of indenter-induced brain deformation: a feasibility study. Medical Imaging: Image-Guided Procedures 2014: 903616 - 2013
- [c20]Songbai Ji, Xiaoyao Fan, David W. Roberts, Alex Hartov, Keith D. Paulsen:
Flow-Based Correspondence Matching in Stereovision. MLMI 2013: 106-113 - [c19]Yasheng Chen, Zheng Fan, Songbai Ji, Joseph Muenzer, Hongyu An, Weili Lin:
Patient-Specific Biomechanical Modeling of Ventricular Enlargement in Hydrocephalus from Longitudinal Magnetic Resonance Imaging. MICCAI (3) 2013: 291-298 - [c18]Xiaoyao Fan, Songbai Ji, Alex Hartov, David W. Roberts, Keith D. Paulsen:
Retractor-induced brain shift compensation in image-guided neurosurgery. Medical Imaging: Image-Guided Procedures 2013: 86710K - [c17]Songbai Ji, Xiaoyao Fan, Alex Hartov, David W. Roberts, Keith D. Paulsen:
Measuring soft tissue material properties using stereovision and indentation: a proof-of-concept study. Medical Imaging: Image-Guided Procedures 2013: 86710V - [c16]Timothy J. Schaewe, Xiaoyao Fan, Songbai Ji, Alex Hartov, Leslie Hiemenz Holton, David W. Roberts, Keith D. Paulsen, David A. Simon:
Integration of intraoperative and model-updated images into an industry-standard neuronavigation system: initial results. Medical Imaging: Image-Guided Procedures 2013: 867119 - 2012
- [c15]Xiaoyao Fan, Songbai Ji, Alex Hartov, David W. Roberts, Keith D. Paulsen:
Registering stereovision surface with preoperative magnetic resonance images for brain shift compensation. Medical Imaging: Image-Guided Procedures 2012: 83161C - [c14]Songbai Ji, Xiaoyao Fan, David W. Roberts, Keith D. Paulsen:
Quantifying cortical surface harmonic deformation with stereovision during open cranial neurosurgery. Medical Imaging: Image-Guided Procedures 2012: 831634 - 2011
- [c13]Songbai Ji, Xiaoyao Fan, David W. Roberts, Keith D. Paulsen:
Cortical Surface Strain Estimation Using Stereovision. MICCAI (1) 2011: 412-419 - [c12]Xiaoyao Fan, Songbai Ji, Kathryn Fontaine, Alex Hartov, David W. Roberts, Keith D. Paulsen:
Simulation of brain tumor resection in image-guided neurosurgery. Medical Imaging: Image-Guided Procedures 2011: 79640U - [c11]Songbai Ji, Xiaoyao Fan, David W. Roberts, Alex Hartov, Keith D. Paulsen:
Optimizing nonrigid registration performance between volumetric true 3D ultrasound images in image-guided neurosurgery. Medical Imaging: Image-Guided Procedures 2011: 79640V - 2010
- [c10]Yasheng Chen, Songbai Ji, Xunlei Wu, Hongyu An, Hongtu Zhu, Dinggang Shen, Weili Lin:
Simulation of Brain Mass Effect with an Arbitrary Lagrangian and Eulerian FEM. MICCAI (2) 2010: 274-281 - [c9]Xiaoyao Fan, Songbai Ji, Pablo Valdes, David W. Roberts, Alex Hartov, Keith D. Paulsen:
Graphical user interfaces for simulation of brain deformation in image-guided neurosurgery. Medical Imaging: Image-Guided Procedures 2010: 762535 - [c8]Songbai Ji, Xiaoyao Fan, Kathryn Fontaine, Alex Hartov, David W. Roberts, Keith D. Paulsen:
An integrated model-based neurosurgical guidance system. Medical Imaging: Image-Guided Procedures 2010: 762536 - 2009
- [c7]Fenghong Liu, S. Scott Lollis, Songbai Ji, Keith D. Paulsen, Alexander Hartov, David W. Roberts:
Model-Based Estimation of Ventricular Deformation in the Cat Brain. MICCAI (1) 2009: 308-315 - [c6]Songbai Ji, David W. Roberts, Alex Hartov, Keith D. Paulsen:
Combining Multiple True 3D Ultrasound Image Volumes through Re-registration and Rasterization. MICCAI (1) 2009: 795-802 - [c5]Songbai Ji, Fenghong Liu, Xiaoyao Fan, Alex Hartov, David W. Roberts, Keith D. Paulsen:
Model-based brain shift compensation in image-guided neurosurgery. Medical Imaging: Image-Guided Procedures 2009: 72612E - [c4]Pablo Valdes, Brent T. Harris, Frédéric Leblond, Kathryn Fontaine, Songbai Ji, Brian W. Pogue, Alex Hartov, David W. Roberts, Keith D. Paulsen:
Brain tumor resection guided by fluorescence imaging and MRI image guidance. Medical Imaging: Image-Guided Procedures 2009: 726103 - 2008
- [c3]Songbai Ji, Alex Hartov, Kathryn Fontaine, Andrea Borsic, David W. Roberts, Keith D. Paulsen:
Coregistered volumetric true 3D ultrasonography in image-guided neurosurgery. Medical Imaging: Image-Guided Procedures 2008: 69180F - [c2]Songbai Ji, Alex Hartov, David W. Roberts, Keith D. Paulsen:
Mutual-information-corrected tumor displacement using intraoperative ultrasound for brain shift compensation in image-guided neurosurgery. Medical Imaging: Image-Guided Procedures 2008: 69182H - 2007
- [c1]Songbai Ji, Fenghong Liu, David W. Roberts, Alex Hartov, Keith D. Paulsen:
Brain-skull boundary conditions in a computational deformation model. Medical Imaging: Image-Guided Procedures 2007: 65092J
Coauthor Index
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