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Yoshitake Sakae

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Journal Articles

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2020
[j3]
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  - journals/jcc/SakaeZLD20
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Yoshitake Sakae, Bin W. Zhang, Ronald M. Levy, Nan-Jie Deng:
Absolute Protein Binding Free Energy Simulations for Ligands with Multiple Poses, a Thermodynamic Path That Avoids Exhaustive Enumeration of the Poses. J. Comput. Chem. 41(1): 56-68 (2020)
2019
[j2]
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Yoshitake Sakae, John E. Straub, Yuko Okamoto:
Enhanced sampling method in molecular simulations using genetic algorithm for biomolecular systems. J. Comput. Chem. 40(2): 475-481 (2019)
2011
[j1]
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Yoshitake Sakae, Tomoyuki Hiroyasu, Mitsunori Miki, Yuko Okamoto:
Protein structure predictions by parallel simulated annealing molecular dynamics using genetic crossover. J. Comput. Chem. 32(7): 1353-1360 (2011)

Conference and Workshop Papers

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2011
[c1]
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Yoshitake Sakae, Tomoyuki Hiroyasu, Mitsunori Miki, Yuko Okamoto:
New Conformational Search Method Using Genetic Algorithm and Knot Theory for Proteins. Pacific Symposium on Biocomputing 2011: 217-228

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