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ORCIDCraig J. Benham
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2010 – 2019
- 2015
[j11]Dina Zhabinskaya, Sally Madden, Craig J. Benham:
SIST: stress-induced structural transitions in superhelical DNA. Bioinform. 31(3): 421-422 (2015)- 2012
- [j10]Dina Zhabinskaya, Craig J. Benham:
Theoretical Analysis of Competing Conformational Transitions in Superhelical DNA. PLoS Comput. Biol. 8(4) (2012) - 2011
- [j9]Dina Zhabinskaya, Craig J. Benham:
Theoretical Analysis of the Stress Induced B-Z Transition in Superhelical DNA. PLoS Comput. Biol. 7(1) (2011)
2000 – 2009
- 2008
- [j8]Huiquan Wang, Craig J. Benham:
Superhelical Destabilization in Regulatory Regions of Stress Response Genes. PLoS Comput. Biol. 4(1) (2008) - 2007
- [j7]Conrad A. Nieduszynski
, Shin-ichiro Hiraga, Prashanth Ak, Craig J. Benham, Anne D. Donaldson:
OriDB: a DNA replication origin database. Nucleic Acids Res. 35(Database-Issue): 40-46 (2007) - 2006
- [j6]Huiquan Wang, Craig J. Benham:
Promoter prediction and annotation of microbial genomes based on DNA sequence and structural responses to superhelical stress. BMC Bioinform. 7: 248 (2006) - [j5]Huiquan Wang, Miroslava Kaloper, Craig J. Benham:
SIDDBASE: a database containing the stress-induced DNA duplex destabilization (SIDD) profiles of complete microbial genomes. Nucleic Acids Res. 34(Database-Issue): 373-378 (2006) - 2005
- [j4]Prashanth Ak, Craig J. Benham:
Susceptibility to Superhelically Driven DNA Duplex Destabilization: A Highly Conserved Property of Yeast Replication Origins. PLoS Comput. Biol. 1(1) (2005) - [c12]Huiquan Wang, Craig J. Benham:
Annotation of Promoter Regions in Microbial Genomes Based on DNA Structural and Sequence Properties. Systems Biology and Regulatory Genomics 2005: 212-224 - 2004
- [j3]Craig J. Benham, Chengpeng Bi:
The Analysis of Stress-Induced Duplex Destabilization in Long Genomic DNA Sequences. J. Comput. Biol. 11(4): 519-543 (2004) - [c11]Huiquan Wang, Craig J. Benham:
Superhelically Destabilized Sites in the E. coli Genome: Implications for Promoter Prediction in Prokaryotes. German Conference on Bioinformatics 2004: 217-226 - 2003
- [c10]Chengpeng Bi, Craig J. Benham:
The Approximate Algorithm for Analysis of the Strand Separation Transition in Super helical DNA Using Nearest Neighbor Energetics. CSB 2003: 460-461 - 2001
- [c9]Sandra Götze, A. Knopp, Craig J. Benham, Stephen A. Krawetz, Jürgen Bode:
Biomathematical and in vitro analysis of destabilized regions in the interferon gene cluster. German Conference on Bioinformatics 2001: 161 - [c8]A. Knopp, Sandra Götze, Craig J. Benham, Matthias Frisch, Stephen A. Krawetz, Jürgen Bode:
Analysis of biomathematically predicted Scaffold / Matrix Attached Regions (S/MARs) by three different approaches. German Conference on Bioinformatics 2001: 200 - [c7]Craig J. Benham:
In Silico Biology: The emergence of a new biological methodology. HERCMA 2001: 91 - [c6]Craig J. Benham:
Stress-Induced DNA Duplex Destabilization in Transcriptional Initiation. Pacific Symposium on Biocomputing 2001: 103-114
1990 – 1999
- 1998
- [c5]Craig J. Benham:
The topologically driven strand separation transition in DNA - methods of analysis and biological significance. Mathematical Support for Molecular Biology 1998: 173-198 - [c4]Richard M. Fye, Craig J. Benham:
A formally exact method to numerically analyze local denaturation in superhelical DNA. RECOMB 1998: 79-84 - 1997
- [c3]Gabriela Hristescu, Craig J. Benham, Martin Farach:
DNA Strand Separation Prediction: A Parallel Implementation. PDPTA 1997: 610-619 - 1996
- [j2]Craig J. Benham:
Computation of DNA structural variability - a new predictor of DNA regulatory regions. Comput. Appl. Biosci. 12(5): 375-381 (1996) - [c2]Craig J. Benham:
Sites of Superhelical DNA Duplex Destabilization occour at Specific Regulatory Regions. German Conference on Bioinformatics 1996: 46-52 - 1995
- [j1]Craig J. Benham, Sampath Kannan, Michael Paterson, Tandy J. Warnow:
Hen's Teeth and Whale's Feet: Generalized Characters and Their Compatibility. J. Comput. Biol. 2(4): 515-525 (1995) - [c1]Craig J. Benham, Sampath Kannan, Tandy J. Warnow:
Of Chicken Teeth and Mouse Eyes, or Generalized Character Compatibility. CPM 1995: 17-26
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