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2020 – today
- 2021
[j7]Duy-Tan J. Pham, Gene J. Yu, Jean-Marie C. Bouteiller
, Theodore W. Berger:
Bridging Hierarchies in Multi-Scale Models of Neural Systems: Look-Up Tables Enable Computationally Efficient Simulations of Non-linear Synaptic Dynamics. Frontiers Comput. Neurosci. 15: 733155 (2021)- 2020
- [j6]Zane Z. Chou, Gene J. Yu, Theodore W. Berger:
Generation of Granule Cell Dendritic Morphologies by Estimating the Spatial Heterogeneity of Dendritic Branching. Frontiers Comput. Neurosci. 14: 23 (2020) - [j5]Adam Mergenthal, Jean-Marie C. Bouteiller, Gene J. Yu, Theodore W. Berger:
A Computational Model of the Cholinergic Modulation of CA1 Pyramidal Cell Activity. Frontiers Comput. Neurosci. 14: 75 (2020) - [j4]Gene J. Yu, Jean-Marie C. Bouteiller, Theodore W. Berger:
Topographic Organization of Correlation Along the Longitudinal and Transverse Axes in Rat Hippocampal CA3 Due to Excitatory Afferents. Frontiers Comput. Neurosci. 14: 588881 (2020)
2010 – 2019
- 2019
- [j3]Gene J. Yu, Jean-Marie C. Bouteiller, Dong Song, Theodore W. Berger:
Axonal Anatomy Optimizes Spatial Encoding in the Rat Entorhinal-Dentate System: A Computational Study. IEEE Trans. Biomed. Eng. 66(10): 2728-2739 (2019) - [c13]Gene J. Yu, Zhicheng Feng, Theodore W. Berger:
Network Activity Due to Topographic Organization of Schaffer Collaterals in a Large-Scale Model of Rat CA1. EMBC 2019: 2977-2980 - 2018
- [j2]Clayton S. Bingham, Kyle Loizos, Gene J. Yu, Andrew Gilbert, Jean-Marie C. Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger:
Model-Based Analysis of Electrode Placement and Pulse Amplitude for Hippocampal Stimulation. IEEE Trans. Biomed. Eng. 65(10): 2278-2289 (2018) - [c12]Zane Z. Chou, Gene J. Yu, Theodore W. Berger:
Point Process Filtering Estimates of Branching Rate for Neural Dendritic Morphology Generation. EMBC 2018: 5854-5857 - [c11]Eric Y. Hu, Gene J. Yu, Dong Song, Jean-Marie C. Bouteiller, Theodore W. Berger:
Modeling Nonlinear Synaptic Dynamics: A Laguerre-Volterra Network Framework for Improved Computational Efficiency in Large Scale Simulations. EMBC 2018: 6129-6132 - 2016
- [j1]Phillip J. Hendrickson, Gene J. Yu, Dong Song, Theodore W. Berger:
A Million-Plus Neuron Model of the Hippocampal Dentate Gyrus: Critical Role for Topography in Determining Spatiotemporal Network Dynamics. IEEE Trans. Biomed. Eng. 63(1): 199-209 (2016) - [c10]Gene J. Yu, Dong Song, Theodore W. Berger:
Place field detection using grid-based clustering in a large-scale computational model of the rat dentate gyrus. EMBC 2016: 1405-1408 - [c9]Clayton S. Bingham, Kyle Loizos, Gene J. Yu, Andrew Gilbert, Jean-Marie Bouteiller, Dong Song, Gianluca Lazzi, Theodore W. Berger:
A large-scale detailed neuronal model of electrical stimulation of the dentate gyrus and perforant path as a platform for electrode design and optimization. EMBC 2016: 2794-2797 - 2015
- [c8]Gene J. Yu, Phillip J. Hendrickson, Dong Song, Theodore W. Berger:
Topography-dependent spatio-temporal correlations in the entorhinal-dentate-CA3 circuit in a large-scale computational model of the Rat Hippocampus. EMBC 2015: 3965-3968 - [c7]Phillip J. Hendrickson, Gene J. Yu, Dong Song, Theodore W. Berger:
A million-plus neuron model of the hippocampal dentate gyrus: Dependency of spatio-temporal network dynamics on topography. EMBC 2015: 4713-4716 - 2014
- [c6]Gene J. Yu, Dong Song, Theodore W. Berger:
Implementation of the excitatory entorhinal-dentate-CA3 topography in a large-scale computational model of the rat hippocampus. EMBC 2014: 6581-6584 - 2013
- [c5]Gene J. Yu, Phillip J. Hendrickson, Brian S. Robinson, Dong Song, Theodore W. Berger:
The role of topography in the transformation of spatiotemporal patterns by a large-scale, biologically realistic model of the rat dentate gyrus. EMBC 2013: 5950-5953 - [c4]Phillip J. Hendrickson, Gene J. Yu, Brian S. Robinson, Dong Song, Theodore W. Berger:
The contribution of relative activation levels between populations of cells to network activity in a large-scale biologically realistic model of the hippocampus. EMBC 2013: 5962-5965 - 2012
- [c3]Gene J. Yu, Brian S. Robinson, Phillip J. Hendrickson, Dong Song, Theodore W. Berger:
Implementation of topographically constrained connectivity for a large-scale biologically realistic model of the hippocampus. EMBC 2012: 1358-1361 - [c2]Brian S. Robinson, Gene J. Yu, Phillip J. Hendrickson, Dong Song, Theodore W. Berger:
Implementation of activity-dependent synaptic plasticity rules for a large-scale biologically realistic model of the hippocampus. EMBC 2012: 1366-1369 - [c1]Phillip J. Hendrickson, Gene J. Yu, Brian S. Robinson, Dong Song, Theodore W. Berger:
Towards a large-scale biologically realistic model of the hippocampus. EMBC 2012: 4595-4598
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