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ORCIDJan Kirschke
Jan S. Kirschke – Jan Stefan Kirschke
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2020 – today
- 2024
[j4]Aleksandra M. Paciorek, Claudio E. von Schacky, Sarah C. Foreman, Felix G. Gassert, Florian T. Gassert, Jan S. Kirschke, Karl-Ludwig Laugwitz, Tobias Geith, Martin Hadamitzky, Jonathan Nadjiri
:
Automated assessment of cardiac pathologies on cardiac MRI using T1-mapping and late gadolinium phase sensitive inversion recovery sequences with deep learning. BMC Medical Imaging 24(1): 43 (2024)- [i51]Martin Frank, Fabian Holzberger, Medeea Horvat, Jan Kirschke, Matthias Mayr, Markus Muhr, Natalia Nebulishvili, Alexander Popp, Julian Schwarting, Barbara I. Wohlmuth:
Numerical simulation of endovascular treatment options for cerebral aneurysms. CoRR abs/2402.00550 (2024) - [i50]Hendrik Kristian Möller, Robert Graf, Joachim Schmitt, Benjamin Keinert, Matan Atad, Anjany Sekuboyina, Felix Streckenbach, Hanna Schön, Florian Kofler, Thomas Kröncke, Stefanie Bette, Stefan Willich, Thomas Keil, Thoralf Niendorf, Tobias Pischon, Beate Endemann, Bjoern H. Menze, Daniel Rueckert, Jan S. Kirschke:
SPINEPS - Automatic Whole Spine Segmentation of T2-weighted MR images using a Two-Phase Approach to Multi-class Semantic and Instance Segmentation. CoRR abs/2402.16368 (2024) - [i49]Julian Schwarting, Fabian Holzberger, Markus Muhr, Martin Renz, Tobias Boeckh-Behrens, Barbara I. Wohlmuth, Jan Kirschke:
Numerical simulation of individual coil placement - A proof-of-concept study for the prediction of recurrence after aneurysm coiling. CoRR abs/2403.06889 (2024) - [i48]Ezequiel de la Rosa, Mauricio Reyes, Sook-Lei Liew, Alexandre Hutton, Roland Wiest, Johannes Kaesmacher, Uta Hanning, Arsany Hakim, Richard Zubal, Waldo Valenzuela, David Robben, Diana Maria Sima, Vincenzo Anania, Arne Brys, James A. Meakin, Anne Mickan, Gabriel Broocks, Christian Heitkamp, Shengbo Gao, Kongming Liang, Ziji Zhang, Md Mahfuzur Rahman Siddiquee, Andriy Myronenko, Pooya Ashtari, Sabine Van Huffel, Hyun-su Jeong, Chiho Yoon, Chulhong Kim, Jiayu Huo, Sébastien Ourselin, Rachel Sparks, Albert Clèrigues, Arnau Oliver, Xavier Lladó, Liam F. Chalcroft, Ioannis Pappas, Jeroen Bertels, Ewout Heylen, Juliette Moreau, Nima Hatami, Carole Frindel, Abdul Qayyum, Moona Mazher, Domenec Puig, Shao-Chieh Lin, Chun-Jung Juan, Tianxi Hu, Lyndon Boone, Maged Goubran, Yi-Jui Liu, Susanne Wegener, Florian Kofler, Ivan Ezhov, Suprosanna Shit, Moritz Roman Hernandez Petzsche, Bjoern H. Menze, Jan S. Kirschke, Benedikt Wiestler:
A Robust Ensemble Algorithm for Ischemic Stroke Lesion Segmentation: Generalizability and Clinical Utility Beyond the ISLES Challenge. CoRR abs/2403.19425 (2024) - [i47]Poulami Sinhamahapatra, Suprosanna Shit, Anjany Sekuboyina, Malek El Husseini, David Schinz, Nicolas Lenhart, Bjoern H. Menze, Jan Kirschke, Karsten Roscher, Stephan Günnemann:
Enhancing Interpretability of Vertebrae Fracture Grading using Human-interpretable Prototypes. CoRR abs/2404.02830 (2024) - [i46]Robert Graf, Paul-Sören Platzek, Evamaria Olga Riedel, Constanze Ramschütz, Sophie Starck, Hendrik Kristian Möller, Matan Atad, Henry Völzke, Robin Bülow, Carsten Oliver Schmidt, Julia Rüdebusch, Matthias Jung, Marco Reisert, Jakob Weiss, Maximilian Löffler, Fabian Bamberg, Bene Wiestler, Johannes C. Paetzold, Daniel Rueckert, Jan Stefan Kirschke:
TotalVibeSegmentator: Full Torso Segmentation for the NAKO and UK Biobank in Volumetric Interpolated Breath-hold Examination Body Images. CoRR abs/2406.00125 (2024) - [i45]Matan Atad, David Schinz, Hendrik Kristian Möller, Robert Graf, Benedikt Wiestler, Daniel Rueckert, Nassir Navab, Jan S. Kirschke, Matthias Keicher:
Counterfactual Explanations for Medical Image Classification and Regression using Diffusion Autoencoder. CoRR abs/2408.01571 (2024) - [i44]Matan Atad, Gabriel Gruber, Marx Ribeiro, Luis Fernando Nicolini, Robert Graf, Hendrik Kristian Möller, Kati Nispel, Ivan Ezhov, Daniel Rueckert, Jan S. Kirschke:
Don't You (Project Around Discs)? Neural Network Surrogate and Projected Gradient Descent for Calibrating an Intervertebral Disc Finite Element Model. CoRR abs/2408.06067 (2024) - [i43]Ezequiel de la Rosa, Ruisheng Su, Mauricio Reyes, Roland Wiest, Evamaria Olga Riedel, Florian Kofler, Kaiyuan Yang, Hakim Baazaoui, David Robben, Susanne Wegener, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze:
ISLES'24: Improving final infarct prediction in ischemic stroke using multimodal imaging and clinical data. CoRR abs/2408.10966 (2024) - [i42]Evamaria Olga Riedel, Ezequiel de la Rosa, The Anh Baran, Moritz Roman Hernandez Petzsche, Hakim Baazaoui, Kaiyuan Yang, David Robben, Joaquin Oscar Seia, Roland Wiest, Mauricio Reyes, Ruisheng Su, Claus Zimmer, Tobias Boeckh-Behrens, Maria Berndt, Bjoern H. Menze, Benedikt Wiestler, Susanne Wegener, Jan S. Kirschke:
ISLES 2024: The first longitudinal multimodal multi-center real-world dataset in (sub-)acute stroke. CoRR abs/2408.11142 (2024) - [i41]Robert Graf, Florian Hunecke, Soeren Pohl, Matan Atad, Hendrik Moeller, Sophie Starck, Thomas Kröncke, Stefanie Bette, Fabian Bamberg, Tobias Pischon, Thoralf Niendorf, Carsten Oliver Schmidt, Johannes C. Paetzold, Daniel Rueckert, Jan S. Kirschke:
Detecting Unforeseen Data Properties with Diffusion Autoencoder Embeddings using Spine MRI data. CoRR abs/2410.10220 (2024) - 2023
- [j3]Patrick Bilic, Patrick Ferdinand Christ, Hongwei Li, Eugene Vorontsov, Avi Ben-Cohen, Georgios Kaissis, Adi Szeskin, Colin Jacobs, Gabriel Efrain Humpire Mamani, Gabriel Chartrand, Fabian Lohöfer, Julian Walter Holch, Wieland H. Sommer, Felix Hofmann, Alexandre Hostettler, Naama Lev-Cohain, Michal Drozdzal, Michal Marianne Amitai, Refael Vivanti, Jacob Sosna, Ivan Ezhov, Anjany Sekuboyina, Fernando Navarro, Florian Kofler, Johannes C. Paetzold, Suprosanna Shit, Xiaobin Hu, Jana Lipková, Markus Rempfler, Marie Piraud, Jan Kirschke, Benedikt Wiestler, Zhiheng Zhang, Christian Hülsemeyer, Marcel Beetz, Florian Ettlinger, Michela Antonelli, Woong Bae, Miriam Bellver, Lei Bi, Hao Chen, Grzegorz Chlebus, Erik B. Dam, Qi Dou, Chi-Wing Fu, Bogdan Georgescu, Xavier Giró-i-Nieto, Felix Grün, Xu Han, Pheng-Ann Heng, Jürgen Hesser, Jan Hendrik Moltz, Christian Igel, Fabian Isensee, Paul Jäger, Fucang Jia, Krishna Chaitanya Kaluva, Mahendra Khened, Ildoo Kim, Jae-Hun Kim, Sungwoong Kim, Simon Kohl, Tomasz K. Konopczynski, Avinash Kori, Ganapathy Krishnamurthi, Fan Li, Hongchao Li, Junbo Li, Xiaomeng Li, John S. Lowengrub, Jun Ma, Klaus H. Maier-Hein, Kevis-Kokitsi Maninis, Hans Meine, Dorit Merhof, Akshay Pai, Mathias Perslev, Jens Petersen, Jordi Pont-Tuset, Jin Qi, Xiaojuan Qi, Oliver Rippel, Karsten Roth, Ignacio Sarasua, Andrea Schenk, Zengming Shen, Jordi Torres, Christian Wachinger, Chunliang Wang, Leon Weninger, Jianrong Wu, Daguang Xu, Xiaoping Yang, Simon Chun-Ho Yu, Yading Yuan, Miao Yue, Liping Zhang, Manuel Jorge Cardoso, Spyridon Bakas, Rickmer Braren, Volker Heinemann, Christopher Pal, An Tang, Samuel Kadoury, Luc Soler, Bram van Ginneken, Hayit Greenspan, Leo Joskowicz, Bjoern H. Menze:
The Liver Tumor Segmentation Benchmark (LiTS). Medical Image Anal. 84: 102680 (2023) - [c27]Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Bran Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan C. Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
blob loss: Instance Imbalance Aware Loss Functions for Semantic Segmentation. IPMI 2023: 755-767 - [c26]Florian Kofler, Johannes Wahle, Ivan Ezhov, Sophia J. Wagner, Rami Al-Maskari, Emilia Gryska, Mihail I. Todorov, Christina Bukas, Felix Meissen, Tingying Peng, Ali Ertürk, Daniel Rueckert, Rolf A. Heckemann, Jan Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze, Marie Piraud:
Approaching Peak Ground Truth. ISBI 2023: 1-6 - [c25]Anjany Sekuboyina, Jannik Irmai, Suprosanna Shit, Jan Kirschke, Bjoern Andres, Bjoern H. Menze:
Pushing the Limits of an FCN and A CRF Towards Near-Ideal Vertebrae Labelling. ISBI 2023: 1-5 - [c24]Alina F. Dima, Veronika A. Zimmer, Martin J. Menten, Hongwei Bran Li, Markus Graf, Tristan Lemke, Philipp Raffler, Robert Graf, Jan S. Kirschke, Rickmer Braren, Daniel Rueckert:
3D Arterial Segmentation via Single 2D Projections and Depth Supervision in Contrast-Enhanced CT Images. MICCAI (1) 2023: 141-151 - [c23]Julian McGinnis, Suprosanna Shit, Hongwei Bran Li, Vasiliki Sideri-Lampretsa, Robert Graf, Maik Dannecker, Jiazhen Pan, Nil Stolt Ansó, Mark Mühlau, Jan S. Kirschke, Daniel Rueckert, Benedikt Wiestler:
Single-subject Multi-contrast MRI Super-resolution via Implicit Neural Representations. MICCAI (8) 2023: 173-183 - [i40]Florian Kofler, Johannes Wahle, Ivan Ezhov, Sophia J. Wagner, Rami Al-Maskari, Emilia Gryska, Mihail I. Todorov, Christina Bukas, Felix Meissen, Tingying Peng, Ali Ertürk, Daniel Rueckert, Rolf A. Heckemann, Jan Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze, Marie Piraud:
Approaching Peak Ground Truth. CoRR abs/2301.00243 (2023) - [i39]Matthias Keicher, Matan Atad, David Schinz, Alexandra S. Gersing, Sarah C. Foreman, Sophia S. Goller, Juergen Weissinger, Jon Rischewski, Anna-Sophia Dietrich, Benedikt Wiestler, Jan S. Kirschke, Nassir Navab:
Semantic Latent Space Regression of Diffusion Autoencoders for Vertebral Fracture Grading. CoRR abs/2303.12031 (2023) - [i38]Julian McGinnis, Suprosanna Shit, Hongwei Bran Li, Vasiliki Sideri-Lampretsa, Robert Graf, Maik Dannecker, Jiazhen Pan, Nil Stolt Ansó, Mark Mühlau, Jan S. Kirschke, Daniel Rueckert, Benedikt Wiestler:
Multi-contrast MRI Super-resolution via Implicit Neural Representations. CoRR abs/2303.15065 (2023) - [i37]Diana Waldmannstetter, Florian Kofler, Benedikt Wiestler, Julian Schwarting, Ivan Ezhov, Marie Metz, Daniel Rueckert, Jan S. Kirschke, Marie Piraud, Bjoern H. Menze:
Primitive Simultaneous Optimization of Similarity Metrics for Image Registration. CoRR abs/2304.01601 (2023) - [i36]Florian Kofler, Felix Meissen, Felix Steinbauer, Robert Graf, Eva Oswald, Ezequiel de la Rosa, Hongwei Bran Li, Ujjwal Baid, Florian A. Hölzl, Özgün Turgut, Izabela Horvath, Diana Waldmannstetter, Christina Bukas, Maruf Adewole, Syed Muhammad Anwar, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Gian Marco Conte, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Juan Eugenio Iglesias, Koen Van Leemput, Spyridon Bakas, Daniel Rueckert, Benedikt Wiestler, Ivan Ezhov, Marie Piraud, Bjoern H. Menze:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Local Synthesis of Healthy Brain Tissue via Inpainting. CoRR abs/2305.08992 (2023) - [i35]Hongwei Bran Li, Gian Marco Conte, Syed Muhammad Anwar, Florian Kofler, Koen Van Leemput, Marie Piraud, Ivan Ezhov, Felix Meissen, Maruf Adewole, Anastasia Janas, Anahita Fathi Kazerooni, Dominic LaBella, Ahmed W. Moawad, Keyvan Farahani, James A. Eddy, Timothy Bergquist, Verena Chung, Russell Takeshi Shinohara, Farouk Dako, Walter I. Wiggins, Zachary Reitman, Chunhao Wang, Xinyang Liu, Zhifan Jiang, Ariana Familiar, Elaine Johanson, Zeke Meier, Christos Davatzikos, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Suyash Mohan, John Mongan, Christopher Hess, Soonmee Cha, Javier E. Villanueva-Meyer, Errol Colak, Priscila Crivellaro, András Jakab, Jake Albrecht, Udunna Anazodo, Mariam Aboian, Thomas Yu, Ujjwal Baid, Spyridon Bakas, Marius George Linguraru, Bjoern H. Menze, Juan Eugenio Iglesias, Benedikt Wiestler:
The Brain Tumor Segmentation (BraTS) Challenge 2023: Brain MR Image Synthesis for Tumor Segmentation (BraSyn). CoRR abs/2305.09011 (2023) - [i34]Qingqiao Hu, Hao Wang, Jing Luo, Yunhao Luo, Zhiheng Zhang, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze, Jianguo Zhang, Hongwei Bran Li:
Inter-Rater Uncertainty Quantification in Medical Image Segmentation via Rater-Specific Bayesian Neural Networks. CoRR abs/2306.16556 (2023) - [i33]Diana Waldmannstetter, Benedikt Wiestler, Julian Schwarting, Ivan Ezhov, Marie Metz, Spyridon Bakas, Bhakti Baheti, Satrajit Chakrabarty, Jan S. Kirschke, Rolf A. Heckemann, Marie Piraud, Florian Kofler, Bjoern H. Menze:
Framing image registration as a landmark detection problem for better representation of clinical relevance. CoRR abs/2308.01318 (2023) - [i32]Robert Graf, Joachim Schmitt, Sarah Schlaeger, Hendrik Kristian Möller, Vasiliki Sideri-Lampretsa, Anjany Sekuboyina, Sandro Manuel Krieg, Benedikt Wiestler, Bjoern H. Menze, Daniel Rueckert, Jan Stefan Kirschke:
Denoising diffusion-based MR to CT image translation enables whole spine vertebral segmentation in 2D and 3D without manual annotations. CoRR abs/2308.09345 (2023) - [i31]Jianning Li, Antonio Pepe, Christina Gsaxner, Gijs Luijten, Yuan Jin, Narmada Ambigapathy, Enrico Nasca, Naida Solak, Gian Marco Melito, Afaque R. Memon, Xiaojun Chen, Jan Stefan Kirschke, Ezequiel de la Rosa, Patrick Ferdinand Christ, Hongwei Bran Li, David G. Ellis, Michele R. Aizenberg, Sergios Gatidis, Thomas Küstner, Nadya Shusharina, Nicholas Heller, Vincent Andrearczyk, Adrien Depeursinge, Mathieu Hatt, Anjany Sekuboyina, Maximilian Löffler, Hans Liebl, Reuben Dorent, Tom Vercauteren, Jonathan Shapey, Aaron Kujawa, Stefan Cornelissen, Patrick Langenhuizen, Achraf Ben-Hamadou, Ahmed Rekik, Sergi Pujades, Edmond Boyer, Federico Bolelli, Costantino Grana, Luca Lumetti, Hamidreza Salehi, Jun Ma, Yao Zhang, Ramtin Gharleghi, Susann Beier, Arcot Sowmya, Eduardo A. Garza-Villarreal, Thania Balducci, et al.:
MedShapeNet - A Large-Scale Dataset of 3D Medical Shapes for Computer Vision. CoRR abs/2308.16139 (2023) - [i30]Alina F. Dima, Veronika A. Zimmer, Martin J. Menten, Hongwei Bran Li, Markus Graf, Tristan Lemke, Philipp Raffler, Robert Graf, Jan S. Kirschke, Rickmer Braren, Daniel Rueckert:
3D Arterial Segmentation via Single 2D Projections and Depth Supervision in Contrast-Enhanced CT Images. CoRR abs/2309.08481 (2023) - [i29]Florian Kofler, Hendrik Kristian Möller, Josef A. Buchner, Ezequiel de la Rosa, Ivan Ezhov, Marcel Rosier, Isra Mekki, Suprosanna Shit, Moritz Negwer, Rami Al-Maskari, Ali Ertürk, Shankeeth Vinayahalingam, Fabian Isensee, Sarthak Pati, Daniel Rueckert, Jan S. Kirschke, Stefan K. Ehrlich, Annika Reinke, Bjoern H. Menze, Benedikt Wiestler, Marie Piraud:
Panoptica - instance-wise evaluation of 3D semantic and instance segmentation maps. CoRR abs/2312.02608 (2023) - [i28]Kaiyuan Yang, Fabio Musio, Yihui Ma, Norman Juchler, Johannes C. Paetzold, Rami Al-Maskari, Luciano Höher, Hongwei Bran Li, Ibrahim Ethem Hamamci, Anjany Sekuboyina, Suprosanna Shit, Houjing Huang, Diana Waldmannstetter, Florian Kofler, Fernando Navarro, Martin J. Menten, Ivan Ezhov, Daniel Rueckert, Iris N. Vos, Ynte M. Ruigrok, Birgitta K. Velthuis, Hugo J. Kuijf, Julien Hämmerli, Catherine Wurster, Philippe Bijlenga, Laura Westphal, Jeroen Bisschop, Elisa Colombo, Hakim Baazaoui, Andrew Makmur, James Hallinan, Benedikt Wiestler, Jan S. Kirschke, Roland Wiest, Emmanuel Montagnon, Laurent Létourneau-Guillon, Adrian Galdran, Francesco Galati, Daniele Falcetta, Maria A. Zuluaga, Chaolong Lin, Haoran Zhao, Zehan Zhang, Sinyoung Ra, Jongyun Hwang, Hyunjin Park, Junqiang Chen, Marek Wodzinski, Henning Müller, et al.:
Benchmarking the CoW with the TopCoW Challenge: Topology-Aware Anatomical Segmentation of the Circle of Willis for CTA and MRA. CoRR abs/2312.17670 (2023) - 2022
- [c22]Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. BrainLes@MICCAI 2022: 3-13 - [c21]Paul Engstler, Matthias Keicher, David Schinz, Kristina Mach, Alexandra S. Gersing, Sarah C. Foreman, Sophia S. Goller, Juergen Weissinger, Jon Rischewski, Anna-Sophia Dietrich, Benedikt Wiestler, Jan S. Kirschke, Ashkan Khakzar, Nassir Navab:
Interpretable Vertebral Fracture Diagnosis. iMIMIC@MICCAI 2022: 71-81 - [c20]Bailiang Jian, Mohammad Farid Azampour, Francesca De Benetti, Johannes Oberreuter, Christina Bukas, Alexandra S. Gersing, Sarah C. Foreman, Anna-Sophia Dietrich, Jon Rischewski, Jan S. Kirschke, Nassir Navab, Thomas Wendler:
Weakly-Supervised Biomechanically-Constrained CT/MRI Registration of the Spine. MICCAI (6) 2022: 227-236 - [i27]Paul Engstler, Matthias Keicher, David Schinz, Kristina Mach, Alexandra S. Gersing, Sarah C. Foreman, Sophia S. Goller, Juergen Weissinger, Jon Rischewski, Anna-Sophia Dietrich, Benedikt Wiestler, Jan S. Kirschke, Ashkan Khakzar, Nassir Navab:
Interpretable Vertebral Fracture Diagnosis. CoRR abs/2203.16273 (2022) - [i26]Bailiang Jian, Mohammad Farid Azampour, Francesca De Benetti, Johannes Oberreuter, Christina Bukas, Alexandra S. Gersing, Sarah C. Foreman, Anna-Sophia Dietrich, Jon Rischewski, Jan S. Kirschke, Nassir Navab, Thomas Wendler:
Weakly-supervised Biomechanically-constrained CT/MRI Registration of the Spine. CoRR abs/2205.07568 (2022) - [i25]Florian Kofler, Suprosanna Shit, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Rami Al-Maskari, Hongwei Li, Harsharan Bhatia, Timo Loehr, Marie Piraud, Ali Ertürk, Jan Kirschke, Jan Peeken, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
blob loss: instance imbalance aware loss functions for semantic segmentation. CoRR abs/2205.08209 (2022) - [i24]Florian Kofler, Ivan Ezhov, Lucas Fidon, Izabela Horvath, Ezequiel de la Rosa, John LaMaster, Hongwei Li, Tom Finck, Suprosanna Shit, Johannes C. Paetzold, Spyridon Bakas, Marie Piraud, Jan Kirschke, Tom Vercauteren, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
Deep Quality Estimation: Creating Surrogate Models for Human Quality Ratings. CoRR abs/2205.10355 (2022) - [i23]Moritz Roman Hernandez Petzsche, Ezequiel de la Rosa, Uta Hanning, Roland Wiest, Waldo Enrique Valenzuela Pinilla, Mauricio Reyes, Maria Inês Meyer, Sook-Lei Liew, Florian Kofler, Ivan Ezhov, David Robben, Alexandre Hutton, Tassilo Friedrich, Teresa Zarth, Johannes Bürkle, The Anh Baran, Bjoern H. Menze, Gabriel Broocks, Lukas Meyer, Claus Zimmer, Tobias Boeckh-Behrens, Maria Berndt, Benno Ikenberg, Benedikt Wiestler, Jan S. Kirschke:
ISLES 2022: A multi-center magnetic resonance imaging stroke lesion segmentation dataset. CoRR abs/2206.06694 (2022) - [i22]Matan Atad, Vitalii Dmytrenko, Yitong Li, Xinyue Zhang, Matthias Keicher, Jan Kirschke, Benedikt Wiestler, Ashkan Khakzar, Nassir Navab:
CheXplaining in Style: Counterfactual Explanations for Chest X-rays using StyleGAN. CoRR abs/2207.07553 (2022) - 2021
- [j2]Anjany Sekuboyina, Malek El Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukacka, Christian Payer, Darko Stern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Zheng Xiangshang, Xu Liming, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubícek, Jirí Chmelík, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke:
VerSe: A Vertebrae labelling and segmentation benchmark for multi-detector CT images. Medical Image Anal. 73: 102166 (2021) - [j1]Ezequiel de la Rosa, Diana Maria Sima, Bjoern H. Menze, Jan S. Kirschke, David Robben:
AIFNet: Automatic vascular function estimation for perfusion analysis using deep learning. Medical Image Anal. 74: 102211 (2021) - [c19]Hongwei Li, Sunita Gopal, Anjany Sekuboyina, Jianguo Zhang, Chen Niu, Carolin M. Pirkl, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze:
Unpaired MR Image Homogenisation by Disentangled Representations and Its Uncertainty. UNSURE/PIPPI@MICCAI 2021: 44-53 - [c18]Christina Bukas, Bailiang Jian, Luis F. Rodriguez Venegas, Francesca De Benetti, Sebastian Ruehling, Anjany Sekuboyina, Jens Gempt, Jan S. Kirschke, Marie Piraud, Johannes Oberreuter, Nassir Navab, Thomas Wendler:
Patient-Specific Virtual Spine Straightening and Vertebra Inpainting: An Automatic Framework for Osteoplasty Planning. MICCAI (4) 2021: 529-539 - [i21]Florian Kofler, Ivan Ezhov, Fabian Isensee, Fabian Balsiger, Christoph Berger, Maximilian Koerner, Johannes C. Paetzold, Hongwei Li, Suprosanna Shit, Richard McKinley, Spyridon Bakas, Claus Zimmer, Donna P. Ankerst, Jan Kirschke, Benedikt Wiestler, Bjoern H. Menze:
Are we using appropriate segmentation metrics? Identifying correlates of human expert perception for CNN training beyond rolling the DICE coefficient. CoRR abs/2103.06205 (2021) - [i20]Hans Liebl, David Schinz, Anjany Sekuboyina, Luca Malagutti, Maximilian T. Löffler, Amirhossein Bayat, Malek El Husseini, Giles Tetteh, Katharina Grau, Eva Niederreiter, Thomas Baum, Benedikt Wiestler, Bjoern H. Menze, Rickmer Braren, Claus Zimmer, Jan S. Kirschke:
A Computed Tomography Vertebral Segmentation Dataset with Anatomical Variations and Multi-Vendor Scanner Data. CoRR abs/2103.06360 (2021) - [i19]Christina Bukas, Bailiang Jian, Luis F. Rodriguez Venegas, Francesca De Benetti, Sebastian Ruehling, Anjany Sekuboyina, Jens Gempt, Jan S. Kirschke, Marie Piraud, Johannes Oberreuter, Nassir Navab, Thomas Wendler:
Patient-specific virtual spine straightening and vertebra inpainting: An automatic framework for osteoplasty planning. CoRR abs/2103.07279 (2021) - [i18]Ezequiel de la Rosa, David Robben, Diana Maria Sima, Jan S. Kirschke, Bjoern H. Menze:
Differentiable Deconvolution for Improved Stroke Perfusion Analysis. CoRR abs/2103.17111 (2021) - [i17]Giles Tetteh, Fernando Navarro, Johannes C. Paetzold, Jan Kirschke, Claus Zimmer, Bjoern H. Menze:
A Deep Learning Approach to Predicting Collateral Flow in Stroke Patients Using Radiomic Features from Perfusion Images. CoRR abs/2110.12508 (2021) - 2020
- [c17]Hanwool Park, Amirhossein Bayat, Mohammad Sabokrou, Jan S. Kirschke, Bjoern H. Menze:
Robustification of Segmentation Models Against Adversarial Perturbations in Medical Imaging. PRIME@MICCAI 2020: 46-57 - [c16]Maximilian Möller, Matthias Kohl, Stefan Braunewell, Florian Kofler, Benedikt Wiestler, Jan S. Kirschke, Björn H. Menze, Marie Piraud:
Reliable Saliency Maps for Weakly-Supervised Localization of Disease Patterns. iMIMIC/MIL3ID/LABELS@MICCAI 2020: 63-72 - [c15]Amirhossein Bayat, Suprosanna Shit, Adrian Kilian, Jürgen T. Liechtenstein, Jan S. Kirschke, Bjoern H. Menze:
Cranial Implant Prediction Using Low-Resolution 3D Shape Completion and High-Resolution 2D Refinement. AutoImplant@MICCAI 2020: 77-84 - [c14]Ezequiel de la Rosa, David Robben, Diana Maria Sima, Jan S. Kirschke, Bjoern H. Menze:
Differentiable Deconvolution for Improved Stroke Perfusion Analysis. MICCAI (7) 2020: 593-602 - [c13]Malek El Husseini, Anjany Sekuboyina, Maximilian Löffler, Fernando Navarro, Bjoern H. Menze, Jan S. Kirschke:
Grading Loss: A Fracture Grade-Based Metric Loss for Vertebral Fracture Detection. MICCAI (6) 2020: 733-742 - [c12]Amirhossein Bayat, Anjany Sekuboyina, Johannes C. Paetzold, Christian Payer, Darko Stern, Martin Urschler, Jan S. Kirschke, Bjoern H. Menze:
Inferring the 3D Standing Spine Posture from 2D Radiographs. MICCAI (6) 2020: 775-784 - [c11]Diana Waldmannstetter, Fernando Navarro, Benedikt Wiestler, Jan S. Kirschke, Anjany Sekuboyina, Ester Molero, Bjoern H. Menze:
Reinforced Redetection of Landmark in Pre- and Post-operative Brain Scan Using Anatomical Guidance for Image Alignment. WBIR 2020: 81-90 - [i16]Anjany Sekuboyina, Malek El Husseini, Amirhossein Bayat, Maximilian Löffler, Hans Liebl, Hongwei Li, Giles Tetteh, Jan Kukacka, Christian Payer, Darko Stern, Martin Urschler, Maodong Chen, Dalong Cheng, Nikolas Lessmann, Yujin Hu, Tianfu Wang, Dong Yang, Daguang Xu, Felix Ambellan, Tamaz Amiranashvili, Moritz Ehlke, Hans Lamecker, Sebastian Lehnert, Marilia Lirio, Nicolás Pérez de Olaguer, Heiko Ramm, Manish Sahu, Alexander Tack, Stefan Zachow, Tao Jiang, Xinjun Ma, Christoph Angerman, Xin Wang, Kevin Brown, Alexandre Kirszenberg, Élodie Puybareau, Di Chen, Yiwei Bai, Brandon H. Rapazzo, Timyoas Yeah, Amber Zhang, Shangliang Xu, Feng Hou, Zhiqiang He, Chan Zeng, Xiangshang Zheng, Liming Xu, Tucker J. Netherton, Raymond P. Mumme, Laurence E. Court, Zixun Huang, Chenhang He, Li-Wen Wang, Sai Ho Ling, Lê Duy Huynh, Nicolas Boutry, Roman Jakubícek, Jirí Chmelík, Supriti Mulay, Mohanasankar Sivaprakasam, Johannes C. Paetzold, Suprosanna Shit, Ivan Ezhov, Benedikt Wiestler, Ben Glocker, Alexander Valentinitsch, Markus Rempfler, Björn H. Menze, Jan S. Kirschke:
VerSe: A Vertebrae Labelling and Segmentation Benchmark for Multi-detector CT Images. CoRR abs/2001.09193 (2020) - [i15]Amirhossein Bayat, Anjany Sekuboyina, Johannes C. Paetzold, Christian Payer, Darko Stern, Martin Urschler, Jan S. Kirschke, Bjoern H. Menze:
Inferring the 3D Standing Spine Posture from 2D Radiographs. CoRR abs/2007.06612 (2020) - [i14]Malek El Husseini, Anjany Sekuboyina, Maximilian Löffler, Fernando Navarro, Bjoern H. Menze, Jan S. Kirschke:
Grading Loss: A Fracture Grade-based Metric Loss for Vertebral Fracture Detection. CoRR abs/2008.07831 (2020) - [i13]Amirhossein Bayat, Suprosanna Shit, Adrian Kilian, Jürgen T. Liechtenstein, Jan S. Kirschke, Bjoern H. Menze:
Cranial Implant Prediction using Low-Resolution 3D Shape Completion and High-Resolution 2D Refinement. CoRR abs/2009.10769 (2020) - [i12]Hanwool Park, Amirhossein Bayat, Mohammad Sabokrou, Jan S. Kirschke, Bjoern H. Menze:
Robustification of Segmentation Models Against Adversarial Perturbations In Medical Imaging. CoRR abs/2009.11090 (2020) - [i11]Ezequiel de la Rosa, Diana Maria Sima, Bjoern H. Menze, Jan S. Kirschke, David Robben:
AIFNet: Automatic Vascular Function Estimation for Perfusion Analysis Using Deep Learning. CoRR abs/2010.01617 (2020)
2010 – 2019
- 2019
- [c10]Florian Kofler, Johannes C. Paetzold, Ivan Ezhov, Suprosanna Shit, Daniel Krahulec, Jan S. Kirschke, Claus Zimmer, Benedikt Wiestler, Bjoern H. Menze:
A Baseline for Predicting Glioblastoma Patient Survival Time with Classical Statistical Models and Primitive Features Ignoring Image Information. BrainLes@MICCAI (1) 2019: 254-261 - [c9]Ezequiel de la Rosa, Diana Maria Sima, Thijs Vande Vyvere, Jan S. Kirschke, Björn H. Menze:
A Radiomics Approach to Traumatic Brain Injury Prediction in CT Scans. ISBI 2019: 732-735 - [c8]Malek El Husseini, Anjany Sekuboyina, Amirhossein Bayat, Bjoern H. Menze, Maximilian Löffler, Jan S. Kirschke:
Conditioned Variational Auto-encoder for Detecting Osteoporotic Vertebral Fractures. CSI@MICCAI 2019: 29-38 - [c7]Amirhossein Bayat, Anjany Sekuboyina, Felix Hofmann, Malek El Husseini, Jan S. Kirschke, Bjoern H. Menze:
Vertebral Labelling in Radiographs: Learning a Coordinate Corrector to Enforce Spinal Shape. CSI@MICCAI 2019: 39-46 - [c6]Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch, Maximilian Löffler, Jan S. Kirschke, Bjoern H. Menze:
Probabilistic Point Cloud Reconstructions for Vertebral Shape Analysis. MICCAI (6) 2019: 375-383 - [c5]Hongwei Li, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jianguo Zhang, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze:
DiamondGAN: Unified Multi-modal Generative Adversarial Networks for MRI Sequences Synthesis. MICCAI (4) 2019: 795-803 - [i10]Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze:
Adversarially Learning a Local Anatomical Prior: Vertebrae Labelling with 2D reformations. CoRR abs/1902.02205 (2019) - [i9]Hongwei Li, Johannes C. Paetzold, Anjany Sekuboyina, Florian Kofler, Jianguo Zhang, Jan S. Kirschke, Benedikt Wiestler, Bjoern H. Menze:
DiamondGAN: Unified Multi-Modal Generative Adversarial Networks for MRI Sequences Synthesis. CoRR abs/1904.12894 (2019) - [i8]Anjany Sekuboyina, Markus Rempfler, Alexander Valentinitsch, Maximilian Löffler, Jan S. Kirschke, Bjoern H. Menze:
Probabilistic Point Cloud Reconstructions for Vertebral Shape Analysis. CoRR abs/1907.09254 (2019) - 2018
- [c4]Hongwei Li, Jianguo Zhang, Mark Mühlau, Jan Kirschke, Bjoern H. Menze:
Multi-scale Convolutional-Stack Aggregation for Robust White Matter Hyperintensities Segmentation. BrainLes@MICCAI (1) 2018: 199-207 - [c3]Anjany Sekuboyina, Markus Rempfler, Jan Kukacka, Giles Tetteh, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze:
Btrfly Net: Vertebrae Labelling with Energy-Based Adversarial Learning of Local Spine Prior. MICCAI (4) 2018: 649-657 - [i7]Giles Tetteh, Velizar Efremov, Nils D. Forkert, Matthias Schneider, Jan Kirschke, Bruno Weber, Claus Zimmer, Marie Piraud, Bjoern H. Menze:
DeepVesselNet: Vessel Segmentation, Centerline Prediction, and Bifurcation Detection in 3-D Angiographic Volumes. CoRR abs/1803.09340 (2018) - [i6]Anjany Sekuboyina, Markus Rempfler, Jan Kukacka, Giles Tetteh, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze:
Btrfly Net: Vertebrae Labelling with Energy-based Adversarial Learning of Local Spine Prior. CoRR abs/1804.01307 (2018) - [i5]Hongwei Li, Jianguo Zhang, Mark Mühlau, Jan Kirschke, Bjoern H. Menze:
Multi-Scale Convolutional-Stack Aggregation for Robust White Matter Hyperintensities Segmentation. CoRR abs/1807.05153 (2018) - [i4]John N. Jomo, Frits de Prenter, Mohamed Elhaddad, Davide D'Angella, Clemens Verhoosel, Stefan Kollmannsberger, Jan S. Kirschke, Vera Nübel, Harald van Brummelen, Ernst Rank:
Robust and parallel scalable iterative solutions for large-scale finite cell analyses. CoRR abs/1809.00828 (2018) - [i3]Spyridon Bakas, Mauricio Reyes, András Jakab, Stefan Bauer, Markus Rempfler, Alessandro Crimi, Russell Takeshi Shinohara, Christoph Berger, Sung Min Ha, Martin Rozycki, Marcel Prastawa, Esther Alberts, Jana Lipková, John B. Freymann, Justin S. Kirby, Michel Bilello, Hassan M. Fathallah-Shaykh, Roland Wiest, Jan Kirschke, Benedikt Wiestler, Rivka R. Colen, Aikaterini Kotrotsou, Pamela LaMontagne, Daniel S. Marcus, Mikhail Milchenko, Arash Nazeri, Marc-André Weber, Abhishek Mahajan, Ujjwal Baid, Dongjin Kwon, Manu Agarwal, Mahbubul Alam, Alberto Albiol, Antonio Albiol, Alex Varghese, Tran Anh Tuan, Tal Arbel, Aaron Avery, Pranjal B., Subhashis Banerjee, Thomas Batchelder, Kayhan N. Batmanghelich, Enzo Battistella, Martin Bendszus, Eze Benson, José Bernal, George Biros, Mariano Cabezas, Siddhartha Chandra, Yi-Ju Chang, et al.:
Identifying the Best Machine Learning Algorithms for Brain Tumor Segmentation, Progression Assessment, and Overall Survival Prediction in the BRATS Challenge. CoRR abs/1811.02629 (2018) - [i2]Ezequiel de la Rosa, Diana Maria Sima, Thijs Vande Vyvere, Jan S. Kirschke, Bjoern H. Menze:
A Radiomics Approach to Traumatic Brain Injury Prediction in CT Scans. CoRR abs/1811.05699 (2018) - 2017
- [c2]Anjany Sekuboyina, Jan Kukacka, Jan S. Kirschke, Bjoern H. Menze, Alexander Valentinitsch:
Attention-Driven Deep Learning for Pathological Spine Segmentation. MSKI@MICCAI 2017: 108-119 - [i1]Anjany Sekuboyina, Alexander Valentinitsch, Jan S. Kirschke, Bjoern H. Menze:
A Localisation-Segmentation Approach for Multi-label Annotation of Lumbar Vertebrae using Deep Nets. CoRR abs/1703.04347 (2017) - 2016
- [c1]Esther Alberts, Markus Rempfler, Georgina Alber, Thomas Huber, Jan Kirschke, Claus Zimmer, Bjoern H. Menze:
Uncertainty quantification in brain tumor segmentation using CRFs and random perturbation models. ISBI 2016: 428-431
Coauthor Index