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ORCIDKarthik Gopinath
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2020 – today
- 2026
[e1]Christian Wachinger
, Gijs Luijten, Shireen Y. Elhabian, Karthik Gopinath, Jan Egger:
Shape in Medical Imaging - International Workshop, ShapeMI 2025, Held in Conjunction with MICCAI 2025, Daejeon, South Korea, September 23, 2025, Proceedings. Lecture Notes in Computer Science 16171, Springer 2026, ISBN 978-3-032-06773-9 [contents]- 2025
- [j7]Karthik Gopinath, Douglas N. Greve, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Oula Puonti, Juan Eugenio Iglesias:
"Recon-all-clinical": Cortical surface reconstruction and analysis of heterogeneous clinical brain MRI. Medical Image Anal. 103: 103608 (2025) - [c11]Xiaoling Hu, Karthik Gopinath, Peirong Liu, Malte Hoffmann, Koen Van Leemput, Oula Puonti, Juan Eugenio Iglesias:
Hierarchical Uncertainty Estimation for Learning-based Registration in Neuroimaging. ICLR 2025 - [c10]Karthik Gopinath, Raghav Mehta, Ben Glocker, Juan Eugenio Iglesias:
UNSURF: Uncertainty Quantification for Cortical Surface Reconstruction of Clinical Brain MRIs. MICCAI (16) 2025: 640-650 - [i18]Karthik Gopinath, Annabel Sorby-Adams, Jonathan Williams Ramirez, Dina Zemlyanker, Jennifer Guo, David Hunt, Christine L. Mac Donald, C. Dirk Keene, Timothy S. Coalson, Matthew F. Glasser, David C. Van Essen, Matthew S. Rosen, Oula Puonti, W. Taylor Kimberly, Juan Eugenio Iglesias:
From Low Field to High Value: Robust Cortical Mapping from Low-Field MRI. CoRR abs/2505.12228 (2025) - [i17]Jesper Duemose Nielsen, Karthik Gopinath, Andrew Hoopes, Adrian V. Dalca, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Axel Thielscher, Juan Eugenio Iglesias, Oula Puonti:
End-to-end Cortical Surface Reconstruction from Clinical Magnetic Resonance Images. CoRR abs/2505.14017 (2025) - [i16]Raghav Mehta, Karthik Gopinath, Ben Glocker, Juan Eugenio Iglesias:
UNSURF: Uncertainty Quantification for Cortical Surface Reconstruction of Clinical Brain MRIs. CoRR abs/2506.00498 (2025) - [i15]Jonathan Williams Ramirez, Dina Zemlyanker, Lucas J. Deden-Binder, Rogeny Herisse, Erendira Garcia Pallares, Karthik Gopinath, Harshvardhan Gazula, Christopher Mount, Liana Kozanno, Michael S. Marshall, Theresa R. Connors, Matthew P. Frosch, Mark Montine, Derek H. Oakley, Christine L. Mac Donald, C. Dirk Keene, Bradley T. Hyman, Juan Eugenio Iglesias:
Automated Segmentation of Coronal Brain Tissue Slabs for 3D Neuropathology. CoRR abs/2508.09805 (2025) - [i14]Peirong Liu, Oula Puonti, Xiaoling Hu, Karthik Gopinath, Annabel Sorby-Adams, Daniel C. Alexander, W. Taylor Kimberly, Juan Eugenio Iglesias:
A Modality-agnostic Multi-task Foundation Model for Human Brain Imaging. CoRR abs/2509.00549 (2025) - 2024
- [c9]Pablo Blasco Fernandez, Karthik Gopinath, John Williams-Ramirez, Rogeny Herisse, Lucas J. Deden-Binder, Dina Zemlyanker, Theressa Connors, Liana Kozanno, Derek H. Oakley, Bradley T. Hyman, Sean I. Young, Juan Eugenio Iglesias:
Pseudo-rendering for Resolution and Topology-Invariant Cortical Parcellation. MLMI@MICCAI (2) 2024: 74-84 - [c8]Karthik Gopinath, Xiaoling Hu, Malte Hoffmann, Oula Puonti, Juan Eugenio Iglesias:
Registration by Regression (RbR): A Framework for Interpretable and Flexible Atlas Registration. WBIR 2024: 205-215 - [i13]Karthik Gopinath, Xiaoling Hu, Malte Hoffmann, Oula Puonti, Juan Eugenio Iglesias:
Registration by Regression (RbR): a framework for interpretable and flexible atlas registration. CoRR abs/2404.16781 (2024) - [i12]Karthik Gopinath, Douglas N. Greve, Colin G. Magdamo, Steven E. Arnold, Sudeshna Das, Oula Puonti, Juan Eugenio Iglesias:
Recon-all-clinical: Cortical surface reconstruction and analysis of heterogeneous clinical brain MRI. CoRR abs/2409.03889 (2024) - [i11]Xiaoling Hu, Karthik Gopinath, Peirong Liu, Malte Hoffmann, Koen Van Leemput, Oula Puonti, Juan Eugenio Iglesias:
Hierarchical uncertainty estimation for learning-based registration in neuroimaging. CoRR abs/2410.09299 (2024) - 2023
- [j6]Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Learning joint surface reconstruction and segmentation, from brain images to cortical surface parcellation. Medical Image Anal. 90: 102974 (2023) - [c7]Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias:
Cortical Analysis of Heterogeneous Clinical Brain MRI Scans for Large-Scale Neuroimaging Studies. MICCAI (8) 2023: 35-45 - [i10]Karthik Gopinath, Douglas N. Greve, Sudeshna Das, Steven E. Arnold, Colin G. Magdamo, Juan Eugenio Iglesias:
Cortical analysis of heterogeneous clinical brain MRI scans for large-scale neuroimaging studies. CoRR abs/2305.01827 (2023) - 2022
- [j5]Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Learnable Pooling in Graph Convolutional Networks for Brain Surface Analysis. IEEE Trans. Pattern Anal. Mach. Intell. 44(2): 864-876 (2022) - 2021
- [c6]Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
SegRecon: Learning Joint Brain Surface Reconstruction and Segmentation from Images. MICCAI (7) 2021: 650-659 - 2020
- [c5]Ran He, Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Spectral Graph Transformer Networks for Brain Surface Parcellation. ISBI 2020: 372-376 - [c4]Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Graph Domain Adaptation for Alignment-Invariant Brain Surface Segmentation. UNSURE/GRAIL@MICCAI 2020: 152-163 - [i9]Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Graph Domain Adaptation for Alignment-Invariant Brain Surface Segmentation. CoRR abs/2004.00074 (2020)
2010 – 2019
- 2019
- [j4]Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Graph Convolutions on Spectral Embeddings for Cortical Surface Parcellation. Medical Image Anal. 54: 297-305 (2019) - [j3]Karthik Gopinath, Jayanthi Sivaswamy:
Segmentation of Retinal Cysts From Optical Coherence Tomography Volumes Via Selective Enhancement. IEEE J. Biomed. Health Informatics 23(1): 273-282 (2019) - [j2]Jose Dolz, Karthik Gopinath, Jing Yuan, Herve Lombaert, Christian Desrosiers, Ismail Ben Ayed:
HyperDense-Net: A Hyper-Densely Connected CNN for Multi-Modal Image Segmentation. IEEE Trans. Medical Imaging 38(5): 1116-1126 (2019) - [j1]Hrvoje Bogunovic, Freerk G. Venhuizen, Sophie Klimscha, Stefanos Apostolopoulos, Alireza Bab-Hadiashar, Ulas Bagci, Mirza Faisal Beg, Loza Bekalo, Qiang Chen, Carlos Ciller, Karthik Gopinath, Amirali K. Gostar, Kiwan Jeon, Zexuan Ji, Sung Ho Kang, Dara D. Koozekanani, Donghuan Lu, Dustin Morley, Keshab K. Parhi, Hyoung Suk Park, Abdolreza Rashno, Marinko Sarunic, Saad Shaikh, Jayanthi Sivaswamy, Ruwan B. Tennakoon, Shivin Yadav, Sandro De Zanet, Sebastian M. Waldstein, Bianca S. Gerendas, Caroline Klaver, Clara I. Sánchez, Ursula Schmidt-Erfurth:
RETOUCH: The Retinal OCT Fluid Detection and Segmentation Benchmark and Challenge. IEEE Trans. Medical Imaging 38(8): 1858-1874 (2019) - [c3]Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Adaptive Graph Convolution Pooling for Brain Surface Analysis. IPMI 2019: 86-98 - [i8]Ran He, Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Spectral Graph Transformer Networks for Brain Surface Parcellation. CoRR abs/1911.10118 (2019) - [i7]Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Learnable Pooling in Graph Convolution Networks for Brain Surface Analysis. CoRR abs/1911.10129 (2019) - 2018
- [i6]Karthik Gopinath, Christian Desrosiers, Herve Lombaert:
Graph Convolutions on Spectral Embeddings: Learning of Cortical Surface Data. CoRR abs/1803.10336 (2018) - [i5]Jose Dolz, Karthik Gopinath, Jing Yuan, Herve Lombaert, Christian Desrosiers, Ismail Ben Ayed:
HyperDense-Net: A hyper-densely connected CNN for multi-modal image segmentation. CoRR abs/1804.02967 (2018) - [i4]Karthik Gopinath, Samrudhdhi B. Rangrej, Jayanthi Sivaswamy:
A deep learning framework for segmentation of retinal layers from OCT images. CoRR abs/1806.08859 (2018) - 2017
- [c2]Karthik Gopinath, Samrudhdhi B. Rangrej, Jayanthi Sivaswamy:
A Deep Learning Framework for Segmentation of Retinal Layers from OCT Images. ACPR 2017: 888-893 - [i3]Karthik Gopinath, Jayanthi Sivaswamy:
Segmentation of retinal cysts from Optical Coherence Tomography volumes via selective enhancement. CoRR abs/1708.06197 (2017) - [i2]Shivin Yadav, Karthik Gopinath, Jayanthi Sivaswamy:
A Generalized Motion Pattern and FCN based approach for retinal fluid detection and segmentation. CoRR abs/1712.01073 (2017) - 2016
- [c1]Karthik Gopinath, Jayanthi Sivaswamy, Tarannum Mansoori:
Automatic glaucoma assessment from angio-OCT images. ISBI 2016: 193-196 - [i1]Karthik Gopinath, Jayanthi Sivaswamy:
Domain knowledge assisted cyst segmentation in OCT retinal images. CoRR abs/1612.02675 (2016)
Coauthor Index
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