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Ondrej Vavra
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2020 – today
- 2023
- [j6]Ondrej Vavra, Jakub Beránek
, Jan Stourac, Martin Surkovský, Jiri Filipovic, Jirí Damborský
, Jan Martinovic, David Bednar
:
pyCaverDock: Python implementation of the popular tool for analysis of ligand transport with advanced caching and batch calculation support. Bioinform. 39(8) (2023) - 2020
- [j5]Katarína Furmanová, Ondrej Vávra, Barbora Kozlíková, Jirí Damborský
, Vojtech Vonásek, David Bednar, Jan Byska:
DockVis: Visual Analysis of Molecular Docking Trajectories. Comput. Graph. Forum 39(6): 452-464 (2020) - [j4]Jiri Filipovic
, Ondrej Vávra
, Jan Plhak, David Bednar
, Sérgio M. Marques
, Jan Brezovsky
, Ludek Matyska, Jirí Damborský:
CaverDock: A Novel Method for the Fast Analysis of Ligand Transport. IEEE ACM Trans. Comput. Biol. Bioinform. 17(5): 1625-1638 (2020)
2010 – 2019
- 2019
- [j3]Ondrej Vavra, Jiri Filipovic, Jan Plhak, David Bednar
, Sérgio M. Marques
, Jan Brezovsky
, Jan Stourac
, Ludek Matyska, Jirí Damborský
:
CaverDock: a molecular docking-based tool to analyse ligand transport through protein tunnels and channels. Bioinform. 35(23): 4986-4993 (2019) - [j2]Jan Stourac
, Ondrej Vavra, Piia Kokkonen
, Jiri Filipovic, Gaspar R. P. Pinto
, Jan Brezovsky
, Jirí Damborský
, David Bednar
:
Caver Web 1.0: identification of tunnels and channels in proteins and analysis of ligand transport. Nucleic Acids Res. 47(Webserver-Issue): W414-W422 (2019) - [c1]Adam Jurcík, Katarína Furmanová, Jan Byska, Vojtech Vonásek
, Ondrej Vávra, Pavol Ulbrich
, Helwig Hauser, Barbora Kozlíková:
Visual Analysis of Ligand Trajectories in Molecular Dynamics. PacificVis 2019: 212-221 - 2016
- [j1]Jaroslav Bendl
, Jan Stourac
, Eva Sebestova, Ondrej Vavra, Milos Musil, Jan Brezovsky
, Jirí Damborský
:
HotSpot Wizard 2.0: automated design of site-specific mutations and smart libraries in protein engineering. Nucleic Acids Res. 44(Webserver-Issue): W479-W487 (2016)
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last updated on 2024-06-10 20:32 CEST by the dblp team
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