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ORCIDChristopher J. Langmead
Person information
- affiliation: Carnegie Mellon University, Pittsburgh, USA
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2020 – today
- 2024
[j19]Charles London, Douglas Brown, Wenduan Xu, Sezen Vatansever, Christopher J. Langmead, Dimitri Kartsaklis, Stephen Clark, Konstantinos Meichanetzidis:
Peptide binding classification on quantum computers. Quantum Mach. Intell. 6(1): 35 (2024)- 2023
- [i3]Charles London, Douglas Brown, Wenduan Xu, Sezen Vatansever, Christopher James Langmead, Dimitri Kartsaklis, Stephen Clark, Konstantinos Meichanetzidis:
Peptide Binding Classification on Quantum Computers. CoRR abs/2311.15696 (2023) - 2022
- [i2]Thesath Nanayakkara, Gilles Clermont, Christopher James Langmead
, David Swigon:
Deep Normed Embeddings for Patient Representation. CoRR abs/2204.05477 (2022) - 2021
- [j18]Trevor S. Frisby, Christopher James Langmead:
Bayesian optimization with evolutionary and structure-based regularization for directed protein evolution. Algorithms Mol. Biol. 16(1): 13 (2021) - [j17]Trevor S. Frisby, Zhiyun Gong, Christopher James Langmead:
Asynchronous parallel Bayesian optimization for AI-driven cloud laboratories. Bioinform. 37(Supplement): 451-459 (2021) - [j16]Trevor S. Frisby, Shawn J. Baker, Guillaume Marçais, Quang Minh Hoang, Carl Kingsford, Christopher J. Langmead:
Harvestman: a framework for hierarchical feature learning and selection from whole genome sequencing data. BMC Bioinform. 22(1): 174 (2021) - [i1]Thesath Nanayakkara, Gilles Clermont, Christopher James Langmead, David Swigon:
Unifying Cardiovascular Modelling with Deep Reinforcement Learning for Uncertainty Aware Control of Sepsis Treatment. CoRR abs/2101.08477 (2021) - 2020
- [c28]Trevor S. Frisby, Christopher J. Langmead:
Fold Family-Regularized Bayesian Optimization for Directed Protein Evolution. WABI 2020: 18:1-18:17
2010 – 2019
- 2015
- [j15]Faraz Hussain, Christopher J. Langmead, Qi Mi, Joyeeta Dutta-Moscato, Yoram Vodovotz, Sumit Kumar Jha:
Automated parameter estimation for biological models using Bayesian statistical model checking. BMC Bioinform. 16(S17): S8 (2015) - [j14]Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg:
Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models. J. Comput. Biol. 22(6): 474-486 (2015) - 2014
- [j13]Faraz Hussain, Sumit Kumar Jha, Susmit Jha, Christopher James Langmead:
Parameter discovery in stochastic biological models using simulated annealing and statistical model checking. Int. J. Bioinform. Res. Appl. 10(4/5): 519-539 (2014) - [j12]Arup Kumar Ghosh, Faraz Hussain, Susmit Jha, Christopher James Langmead, Sumit Kumar Jha:
Discovering rare behaviours in stochastic differential equations using decision procedures: applications to a minimal cell cycle model. Int. J. Bioinform. Res. Appl. 10(4/5): 540-558 (2014) - [c27]Faraz Hussain, Christopher James Langmead, Qi Mi, Joyeeta Dutta-Moscato, Yoram Vodovotz, Sumit Kumar Jha:
Parameter discovery for stochastic computational models in systems biology using Bayesian model checking. ICCABS 2014: 1-2 - [c26]Hetunandan Kamisetty, Bornika Ghosh, Christopher James Langmead, Chris Bailey-Kellogg:
Learning Sequence Determinants of Protein: Protein Interaction Specificity with Sparse Graphical Models. RECOMB 2014: 129-143 - 2012
- [j11]Sumit Kumar Jha, Christopher James Langmead:
Exploring behaviors of stochastic differential equation models of biological systems using change of measures. BMC Bioinform. 13(S-5): S8 (2012) - [j10]Narges Razavian, Hetunandan Kamisetty, Christopher James Langmead:
Learning generative models of molecular dynamics. BMC Genom. 13(S-1): S5 (2012) - [j9]Sumit Kumar Jha, Raj Gautam Dutta, Christopher James Langmead, Susmit Jha, Emily Sassano:
Synthesis of insulin pump controllers from safety specifications using Bayesian model validation. Int. J. Bioinform. Res. Appl. 8(3/4): 263-285 (2012) - [c25]Arup K. Ghosh, Faraz Hussain, Sumit Kumar Jha, Christopher James Langmead, Susmit Jha:
Decision procedure based discovery of rare behaviors in Stochastic Differential Equation models of biological systems. ICCABS 2012: 1-6 - [c24]Faraz Hussain, Raj Gautam Dutta, Sumit Kumar Jha, Christopher James Langmead, Susmit Jha:
Parameter discovery for stochastic biological models against temporal behavioral specifications using an SPRT based Metric for simulated annealing. ICCABS 2012: 1-6 - 2011
- [j8]Sumit Kumar Jha, Christopher James Langmead:
Synthesis and infeasibility analysis for stochastic models of biochemical systems using statistical model checking and abstraction refinement. Theor. Comput. Sci. 412(21): 2162-2187 (2011) - [c23]Sumit Kumar Jha, Christopher James Langmead, Swarup Mohalik, S. Ramesh:
When to stop verification?: Statistical trade-off between expected loss and simulation cost. DATE 2011: 1309-1314 - [c22]Sumit Kumar Jha, Christopher James Langmead:
Exploring behaviors of SDE models of biological systems using change of measures. ICCABS 2011: 111-116 - [c21]Sumit Kumar Jha, Christopher James Langmead:
Poster: Synthesis of biochemical models. ICCABS 2011: 248 - [c20]Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead:
Approximating Correlated Equilibria using Relaxations on the Marginal Polytope. ICML 2011: 1153-1160 - 2010
- [j7]Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher James Langmead:
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. J. Comput. Biol. 17(3): 309-324 (2010) - [j6]Alexandre Donzé, Gilles Clermont, Christopher James Langmead:
Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology. J. Comput. Biol. 17(3): 325-336 (2010) - [c19]Subhodeep Moitra, Naveena Yanamala, Öznur Tastan, Irtisha Singh, Christopher James Langmead, Judith Klein-Seetharaman:
Analogies between structural and systems biology and systems-of-systems engineering in dynamic environments. SoSE 2010: 1-7
2000 – 2009
- 2009
- [j5]Christopher James Langmead, Sumit Kumar Jha:
Symbolic Approaches for Finding Control Strategies in Boolean Networks. J. Bioinform. Comput. Biol. 7(2): 323-338 (2009) - [c18]Sumit Kumar Jha, Edmund M. Clarke, Christopher James Langmead, Axel Legay, André Platzer, Paolo Zuliani:
A Bayesian Approach to Model Checking Biological Systems. CMSB 2009: 218-234 - [c17]Hetunandan Kamisetty, Christopher James Langmead:
A Bayesian approach to protein model quality assessment. ICML 2009: 481-488 - [c16]Arvind Ramanathan, Pratul K. Agarwal, Maria G. Kurnikova, Christopher James Langmead:
An Online Approach for Mining Collective Behaviors from Molecular Dynamics Simulations. RECOMB 2009: 138-154 - [c15]Alexandre Donzé, Gilles Clermont, Axel Legay, Christopher James Langmead:
Parameter Synthesis in Nonlinear Dynamical Systems: Application to Systems Biology. RECOMB 2009: 155-169 - 2008
- [j4]Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead:
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation. J. Comput. Biol. 15(7): 755-766 (2008) - [c14]Christopher James Langmead, Sumit Kumar Jha:
Symbolic Approaches for Finding Control Strategies in Boolean Networks. APBC 2008: 307-320 - [c13]Edmund M. Clarke, James R. Faeder, Christopher James Langmead, Leonard A. Harris, Sumit Kumar Jha, Axel Legay:
Statistical Model Checking in BioLab: Applications to the Automated Analysis of T-Cell Receptor Signaling Pathway. CMSB 2008: 231-250 - 2007
- [c12]Hetunandan Kamisetty, Eric P. Xing, Christopher James Langmead:
Free Energy Estimates of All-Atom Protein Structures Using Generalized Belief Propagation. RECOMB 2007: 366-380 - [c11]Christopher James Langmead, Sumit Kumar Jha:
Predicting Protein Folding Kinetics Via Temporal Logic Model Checking. WABI 2007: 252-264 - 2006
- [c10]Christopher James Langmead:
A Randomized Algorithm for Learning Mahalanobis Metrics: Application to Classification and Regression of Biological Data. APBC 2006: 217-226 - [c9]K. Arun, Christopher James Langmead:
Structure-Based Chemical Shift Prediction Using Random Forests Non-Linear Regression. APBC 2006: 317-326 - 2005
- [j3]Anthony K. Yan, Christopher James Langmead, Bruce Randall Donald:
A Probability-Based Similarity Measure for Saupe Alignment Tensors with Applications to Residual Dipolar Couplings in NMR Structural Biology. Int. J. Robotics Res. 24(2-3): 165-182 (2005) - 2004
- [j2]Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald:
A Polynomial-Time Nuclear Vector Replacement Algorithm for Automated NMR Resonance Assignments. J. Comput. Biol. 11(2/3): 277-298 (2004) - [c8]Christopher James Langmead, Bruce Randall Donald:
High-Throughput 3D Structural Homology Detection via NMR Resonance Assignment. CSB 2004: 278-289 - [c7]K. Arun, Christopher James Langmead:
Large-Scale Testing of Chemical Shift Prediction Algorithms and Improved Machine Learning-Based Approaches to Shift Prediction. CSB 2004: 712-713 - 2003
- [j1]Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald:
Phase-Independent Rhythmic Analysis of Genome-Wide Expression Patterns. J. Comput. Biol. 10(3/4): 521-536 (2003) - [c6]Christopher James Langmead, Bruce Randall Donald:
3D Structural Homology Detection via Unassigned Residual Dipolar Couplings. CSB 2003: 209-219 - [c5]Christopher James Langmead, Anthony K. Yan, Ryan H. Lilien, Lincong Wang, Bruce Randall Donald:
Large a polynomial-time nuclear vector replacement algorithm for automated NMR resonance assignments. RECOMB 2003: 176-187 - 2002
- [c4]Christopher James Langmead, C. Robertson McClung, Bruce Randall Donald:
A Maximum Entropy Algorithm for Rhythmic Analysis of Genome-Wide Expression Patterns. CSB 2002: 237-245 - [c3]Christopher James Langmead, Anthony K. Yan, C. Robertson McClung, Bruce Randall Donald:
Phase-independent rhythmic analysis of genome-wide expression patterns. RECOMB 2002: 205-215 - 2001
- [c2]Christopher James Langmead, Bruce Randall Donald:
Extracting structural information using time-frequency analysis of protein NMR data. RECOMB 2001: 164-175
1990 – 1999
- 1995
- [c1]Christopher James Langmead:
Sound Analysis, Comparison and Modification Based on Perceptual Model of Timbre. ICMC 1995
Coauthor Index
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