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2020 – today
- 2024
[j8]Juliette Cooke
, Maxime Delmas, Cecilia Wieder, Pablo Rodríguez-Mier, Clément Frainay, Florence Vinson, Timothy M. D. Ebbels, Nathalie Poupin, Fabien Jourdan:
Genome scale metabolic network modelling for metabolic profile predictions. PLoS Comput. Biol. 20(2) (2024)- 2023
- [j7]Louison Fresnais, Olivier Périn, Anne Riu, Romain Grall, Alban Ott, Bernard Fromenty, Jean-Clément Gallardo, Maximilian Stingl, Clément Frainay, Fabien Jourdan, Nathalie Poupin:
A strategy to detect metabolic changes induced by exposure to chemicals from large sets of condition-specific metabolic models computed with enumeration techniques. BMC Bioinform. 24(1): 234 (2023) - 2021
- [j6]Maxime Delmas, Olivier Filangi, Nils Paulhe, Florence Vinson, Christophe Duperier, William Garrier, Paul-Emeric Saunier, Yoann Pitarch, Fabien Jourdan, Franck Giacomoni, Clément Frainay:
FORUM: building a Knowledge Graph from public databases and scientific literature to extract associations between chemicals and diseases. Bioinform. 37(21): 3896-3904 (2021) - [j5]Cecilia Wieder, Clément Frainay, Nathalie Poupin, Pablo Rodríguez-Mier, Florence Vinson, Juliette Cooke, Rachel P. J. Lai, Jacob G. Bundy, Fabien Jourdan, Timothy M. D. Ebbels:
Pathway analysis in metabolomics: Recommendations for the use of over-representation analysis. PLoS Comput. Biol. 17(9) (2021)
2010 – 2019
- 2019
- [j4]Clément Frainay, Sandrine Aros, Maxime Chazalviel, Thomas Garcia, Florence Vinson, Nicolas Weiss, Benoit Colsch, Frédéric Sedel, Dominique Thabut, Christophe Junot, Fabien Jourdan:
MetaboRank: network-based recommendation system to interpret and enrich metabolomics results. Bioinform. 35(2): 274-283 (2019) - 2018
- [j3]Maxime Chazalviel, Clément Frainay, Nathalie Poupin, Florence Vinson, Benjamin Merlet, Yoann Gloaguen, Ludovic Cottret, Fabien Jourdan:
MetExploreViz: web component for interactive metabolic network visualization. Bioinform. 34(2): 312-313 (2018) - [j2]Ludovic Cottret, Clément Frainay, Maxime Chazalviel, Floréal Cabanettes, Yoann Gloaguen, Etienne Camenen, Benjamin Merlet, Stéphanie Heux, Jean-Charles Portais, Nathalie Poupin, Florence Vinson, Fabien Jourdan:
MetExplore: collaborative edition and exploration of metabolic networks. Nucleic Acids Res. 46(Webserver-Issue): W495-W502 (2018) - 2017
- [j1]Clément Frainay, Fabien Jourdan:
Computational methods to identify metabolic sub-networks based on metabolomic profiles. Briefings Bioinform. 18(1): 43-56 (2017)
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