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2020 – today
- 2023
[c32]Camila Roa
, Mats Rynge, Paula Olaya, Karan Vahi, Todd Miller, James Griffioen, Shelley Knuth, John Goodhue, Dávid Hudák, Alana Romanella, Ricardo M. Llamas, Rodrigo Vargas, Miron Livny, Ewa Deelman, Michela Taufer:
End-to-end Integration of Scientific Workflows on Distributed Cyberinfrastructures: Challenges and Lessons Learned with an Earth Science Application. UCC 2023: 17- [c31]Mats Rynge, Karan Vahi, Mohammad Zaiyan Alam, Ewa Deelman, Todd Miller, Miron Livny, Shelley Knuth, James Griffioen, John Goodhue, Dávid Hudák, Julie Ma, Andrew Pasquale, Lissie Fein:
ACCESS Pegasus: Bringing Workflows to the ACCESS Masses. PEARC 2023: 478-480 - 2022
- [c30]Yufeng Xin, Shih-Wen Fu, Anirban Mandal, Ryan Tanaka, Mats Rynge, Karan Vahi, Ewa Deelman:
Data Integrity Error Localization in Networked Systems with Missing Data. ICC 2022: 341-346 - [c29]Tomasz Osinski, Mats Rynge, James K. Hong, Karan Vahi, Ruilin Chu, Cesar Sul, Ewa Deelman, Byoung-Do Kim:
An automated Cryo-EM computational environment on the HPC system using Pegasus WMS. WORKS@SC 2022: 60-67 - [c28]Ishan Abhinit, Emily K. Adams, Khairul Alam, Brian Chase, Ewa Deelman, Lev Gorenstein, Stephen Hudson, Tanzima Z. Islam, Jeffrey Larson, Geoffrey Lentner, Anirban Mandal, John-Luke Navarro, Bogdan Nicolae, Line Pouchard, Robert B. Ross, Banani Roy, Mats Rynge, Alexander Serebrenik, Karan Vahi, Stefan M. Wild, Yufeng Xin, Rafael Ferreira da Silva, Rosa Filgueira:
Novel Proposals for FAIR, Automated, Recommendable, and Robust Workflows. WORKS@SC 2022: 84-92 - [i10]Yufeng Xin, Shih-Wen Fu, Anirban Mandal, Ryan Tanaka, Mats Rynge, Karan Vahi, Ewa Deelman:
Data Integrity Error Localization in Networked Systems with Missing Data. CoRR abs/2207.02102 (2022) - 2021
- [j10]George Papadimitriou, Cong Wang, Karan Vahi, Rafael Ferreira da Silva, Anirban Mandal, Zhengchun Liu, Rajiv Mayani, Mats Rynge, Mariam Kiran, Vickie E. Lynch, Rajkumar Kettimuthu, Ewa Deelman, Jeffrey S. Vetter, Ian T. Foster:
End-to-end online performance data capture and analysis for scientific workflows. Future Gener. Comput. Syst. 117: 387-400 (2021) - [j9]Ewa Deelman, Rafael Ferreira da Silva, Karan Vahi, Mats Rynge, Rajiv Mayani, Ryan Tanaka, Wendy R. Whitcup, Miron Livny:
The Pegasus workflow management system: Translational computer science in practice. J. Comput. Sci. 52: 101200 (2021) - [c27]Bing Xie, Qiang Cao, Mayuresh Kunjir, Linli Wan, Jeffrey S. Chase, Anirban Mandal, Mats Rynge:
WIRE: Resource-efficient Scaling with Online Prediction for DAG-based Workflows. CLUSTER 2021: 35-46 - [c26]Krzysztof Burkat, Maciej Pawlik, Bartosz Balis, Maciej Malawski, Karan Vahi, Mats Rynge, Rafael Ferreira da Silva, Ewa Deelman:
Serverless Containers - Rising Viable Approach to Scientific Workflows. e-Science 2021: 40-49 - [c25]Yufeng Xin, Shih-Wen Fu, Anirban Mandal, Ilya Baldin, Ryan Tanaka, Mats Rynge, Karan Vahi, Ewa Deelman, Ishan Abhinit, Von Welch:
Root Cause Analysis of Data Integrity Errors in Networked Systems with Incomplete Information. ICTC 2021: 735-740 - [i9]Ewa Deelman, Anirban Mandal, Angela P. Murillo, Jarek Nabrzyski, Valerio Pascucci, Robert Ricci, Ilya Baldin, Susan Sons, Laura Christopherson, Charles Vardeman, Rafael Ferreira da Silva, Jane Wyngaard, Steve Petruzza, Mats Rynge, Karan Vahi, Wendy R. Whitcup, Josh Drake, Erik Scott:
Blueprint: Cyberinfrastructure Center of Excellence. CoRR abs/2103.04195 (2021) - 2020
- [c24]Christina Koch, Carrie Brown, Mats Rynge, Emelie Fuchs, Lauren Michael:
Empowering research computing at your campus through the open science grid. PEARC Companion 2020: 4:1 - [i8]Edgar Fajardo Hernandez, Marián Zvada, Derek Weitzel, Mats Rynge, John Hicks, Matyas Selmeci, Brian Lin, Pascal Paschos, Brian Bockelman, Igor Sfiligoi, Andrew Hanushevsky, Frank Würthwein:
Creating a content delivery network for general science on the internet backbone using XCaches. CoRR abs/2007.01408 (2020) - [i7]Krzysztof Burkat, Maciej Pawlik, Bartosz Balis, Maciej Malawski, Karan Vahi, Mats Rynge, Rafael Ferreira da Silva, Ewa Deelman:
Serverless Containers - rising viable approach to Scientific Workflows. CoRR abs/2010.11320 (2020)
2010 – 2019
- 2019
- [j8]Ewa Deelman, Karan Vahi, Mats Rynge, Rajiv Mayani, Rafael Ferreira da Silva, George Papadimitriou, Miron Livny:
The Evolution of the Pegasus Workflow Management Software. Comput. Sci. Eng. 21(4): 22-36 (2019) - [c23]Ryan Mitchell, Loïc Pottier, Steve Jacobs, Rafael Ferreira da Silva, Mats Rynge, Karan Vahi, Ewa Deelman:
Exploration of Workflow Management Systems Emerging Features from Users Perspectives. IEEE BigData 2019: 4537-4544 - [c22]Rafael Ferreira da Silva, Rajiv Mayani, Yuning Shi, Armen R. Kemanian, Mats Rynge, Ewa Deelman:
Empowering Agroecosystem Modeling with HTC Scientific Workflows: The Cycles Model Use Case. IEEE BigData 2019: 4545-4552 - [c21]Karan Vahi, Michael Zink, Mats Rynge, George Papadimitriou, Duncan A. Brown, Rajiv Mayani, Rafael Ferreira da Silva, Ewa Deelman, Anirban Mandal, Eric Lyons:
Custom Execution Environments with Containers in Pegasus-Enabled Scientific Workflows. eScience 2019: 281-290 - [c20]Ewa Deelman, Ryan Mitchell, Loïc Pottier, Mats Rynge, Erik Scott, Karan Vahi, Marina Kogan, Jasmine Mann, Tom Gulbransen, Daniel Allen, David Barlow, Anirban Mandal, Santiago Bonarrigo, Chris Clark, Leslie Goldman, Tristan Goulden, Phil Harvey, David Hulsander, Steve Jacobs, Christine Laney, Ivan Lobo-Padilla, Jeremy Sampson, Valerio Pascucci, John Staarmann, Steve Stone, Susan Sons, Jane Wyngaard, Charles Vardeman, Steve Petruzza, Ilya Baldin, Laura Christopherson:
Cyberinfrastructure Center of Excellence Pilot: Connecting Large Facilities Cyberinfrastructure. eScience 2019: 449-457 - [c19]Steve Bogol, Paul R. Brenner, Adam Brinckman, Ewa Deelman, Rafael Ferreira da Silva, Sandeep Gupta, Jarek Nabrzyski, Soowang Park, Damian Perez, Mats Rynge, Ian J. Taylor, Karan Vahi, Matt Vander Werf, Sarah Rucker, Sebastian Wyngaard:
A Secure Gateway for Enabling ASIC Design Collaborations. IWSG 2019 - [c18]Mats Rynge, Karan Vahi, Ewa Deelman, Anirban Mandal, Ilya Baldin, Omkar Bhide, Randy W. Heiland, Von Welch, Raquel Hill, William L. Poehlman, F. Alex Feltus:
Integrity Protection for Scientific Workflow Data: Motivation and Initial Experiences. PEARC 2019: 17:1-17:8 - [c17]Derek Weitzel, Marián Zvada, Ilija Vukotic, Robert W. Gardner, Brian Bockelman, Mats Rynge, Edgar Fajardo Hernandez, Brian Lin, Mátyás Selmeci:
StashCache: A Distributed Caching Federation for the Open Science Grid. PEARC 2019: 58:1-58:7 - [i6]Derek Weitzel, Marián Zvada, Ilija Vukotic, Robert W. Gardner, Brian Bockelman, Mats Rynge, Edgar Fajardo Hernandez, Brian Lin, Matyas Selmeci:
StashCache: A Distributed Caching Federation for the Open Science Grid. CoRR abs/1905.06911 (2019) - [i5]Karan Vahi, Mats Rynge, George Papadimitriou, Duncan A. Brown, Rajiv Mayani, Rafael Ferreira da Silva, Ewa Deelman, Anirban Mandal, Eric Lyons, Michael Zink:
Custom Execution Environments with Containers in Pegasus-enabled Scientific Workflows. CoRR abs/1905.08204 (2019) - 2018
- [c16]Suchandra Thapa, Robert W. Gardner, Kenneth Richard Herner, Dirk Hufnagel, David Lesny, Mats Rynge:
Homogenizing OSG and XSEDE: Providing Access to XSEDE Allocations through OSG Infrastructure. PEARC 2018: 15:1-15:7 - [c15]Kyle Levi, Mats Rynge, Eroma Abeysinghe, Robert A. Edwards:
Searching the Sequence Read Archive using Jetstream and Wrangler. PEARC 2018: 50:1-50:7 - 2017
- [j7]Idafen Santana-Pérez, Rafael Ferreira da Silva, Mats Rynge, Ewa Deelman, María S. Pérez-Hernández, Óscar Corcho:
Reproducibility of execution environments in computational science using Semantics and Clouds. Future Gener. Comput. Syst. 67: 354-367 (2017) - [c14]William L. Poehlman, Mats Rynge, D. Balamurugan, Nicholas Mills, Frank Alex Feltus:
OSG-KINC: High-throughput gene co-expression network construction using the open science grid. BIBM 2017: 1827-1831 - 2016
- [j6]Yang Liu, Saad M. Khan, Juexin Wang, Mats Rynge, Yuanxun Zhang, Shuai Zeng, Shiyuan Chen, João V. Maldonado dos Santos, Babu Valliyodan, Prasad Calyam, Nirav C. Merchant, Henry T. Nguyen, Dong Xu, Trupti Joshi:
PGen: large-scale genomic variations analysis workflow and browser in SoyKB. BMC Bioinform. 17(S-13): 337 (2016) - [j5]Ewa Deelman, Karan Vahi, Mats Rynge, Gideon Juve, Rajiv Mayani, Rafael Ferreira da Silva:
Pegasus in the Cloud: Science Automation through Workflow Technologies. IEEE Internet Comput. 20(1): 70-76 (2016) - [c13]Rafael Ferreira da Silva, Ewa Deelman, Rosa Filgueira, Karan Vahi, Mats Rynge, Rajiv Mayani, Benjamin Mayer:
Automating environmental computing applications with scientific workflows. eScience 2016: 400-406 - [c12]Dariusz Król, Jacek Kitowski, Rafael Ferreira da Silva, Gideon Juve, Karan Vahi, Mats Rynge, Ewa Deelman:
Science automation in practice: Performance data farming in workflows. ETFA 2016: 1-4 - [c11]Tyson Lee Swetnam, J. D. Pelletier, Craig Rasmussen, N. R. Callahan, Nirav C. Merchant, Eric Lyons, Mats Rynge, Yan Liu, Viswanath Nandigam, Christopher J. Crosby:
Scaling GIS analysis tasks from the desktop to the cloud utilizing contemporary distributed computing and data management approaches: A case study of project-based learning and cyberinfrastructure concepts. XSEDE 2016: 21:1-21:6 - 2015
- [j4]Michael McLennan, Steven M. Clark, Ewa Deelman, Mats Rynge, Karan Vahi, Frank McKenna, Derrick Kearney, Carol X. Song:
HUBzero and Pegasus: integrating scientific workflows into science gateways. Concurr. Comput. Pract. Exp. 27(2): 328-343 (2015) - [j3]Ewa Deelman, Karan Vahi, Gideon Juve, Mats Rynge, Scott Callaghan, Philip Maechling, Rajiv Mayani, Weiwei Chen, Rafael Ferreira da Silva, Miron Livny, R. Kent Wenger:
Pegasus, a workflow management system for science automation. Future Gener. Comput. Syst. 46: 17-35 (2015) - [j2]Rafael Ferreira da Silva, Gideon Juve, Mats Rynge, Ewa Deelman, Miron Livny:
Online Task Resource Consumption Prediction for Scientific Workflows. Parallel Process. Lett. 25(3): 1541003:1-1541003:25 (2015) - [c10]Rafael Ferreira da Silva, Mats Rynge, Gideon Juve, Igor Sfiligoi, Ewa Deelman, James Letts, Frank Würthwein, Miron Livny:
Characterizing a High Throughput Computing Workload: The Compact Muon Solenoid (CMS) Experiment at LHC. ICCS 2015: 39-48 - [c9]Anirban Mandal, Paul Ruth, Ilya Baldin, Yufeng Xin, Claris Castillo, Gideon Juve, Mats Rynge, Ewa Deelman, Jeffrey S. Chase:
Adapting Scientific Workflows on Networked Clouds Using Proactive Introspection. UCC 2015: 162-173 - 2014
- [c8]Idafen Santana-Pérez, Rafael Ferreira da Silva, Mats Rynge, Ewa Deelman, María S. Pérez-Hernández, Óscar Corcho:
A Semantic-Based Approach to Attain Reproducibility of Computational Environments in Scientific Workflows: A Case Study. Euro-Par Workshops (1) 2014: 452-463 - [c7]Anirban Mandal, Paul Ruth, Ilya Baldin, Yufeng Xin, Claris Castillo, Mats Rynge, Ewa Deelman:
Leveraging and Adapting ExoGENI Infrastructure for Data-Driven Domain Science Workflows. GREE 2014: 57-60 - [i4]Doug James, Nancy Wilkins-Diehr, Victoria Stodden, Dirk Colbry, Carlos Rosales, Mark R. Fahey, Justin Shi, Rafael Ferreira da Silva, Kyo Lee, Ralph Roskies, Laurence Loewe, Susan Lindsey, Rob Kooper, Lorena A. Barba, David H. Bailey, Jonathan M. Borwein, Óscar Corcho, Ewa Deelman, Michael C. Dietze, Benjamin Gilbert, Jan Harkes, Seth Keele, Praveen Kumar, Jong Lee, Erika Linke, Richard Marciano, Luigi Marini, Chris Mattmann, Dave Mattson, Kenton McHenry, Robert T. McLay, Sheila Miguez, Barbara S. Minsker, María S. Pérez-Hernández, Dan Ryan, Mats Rynge, Idafen Santana-Pérez, Mahadev Satyanarayanan, Gloriana St. Clair, Keith Webster, Eivind Hovig, Daniel S. Katz, Sophie Kay, Geir Kjetil Sandve, David Skinner, Gabrielle Allen, John Cazes, Kym Won Cho, Jim Fonseca, Lorraine J. Hwang, Lars Koesterke, Pragnesh Patel, Line Pouchard, Edward Seidel, Isuru Suriarachchi:
Standing Together for Reproducibility in Large-Scale Computing: Report on reproducibility@XSEDE. CoRR abs/1412.5557 (2014) - 2013
- [j1]Gideon Juve, Mats Rynge, Ewa Deelman, Jens-S. Vöckler, G. Bruce Berriman:
Comparing FutureGrid, Amazon EC2, and Open Science Grid for Scientific Workflows. Comput. Sci. Eng. 15(4): 20-29 (2013) - [c6]Karan Vahi, Mats Rynge, Gideon Juve, Rajiv Mayani, Ewa Deelman:
Rethinking data management for big data scientific workflows. IEEE BigData 2013: 27-35 - [c5]Sepideh Azarnoosh, Mats Rynge, Gideon Juve, Ewa Deelman, Michal Niec, Maciej Malawski, Rafael Ferreira da Silva:
Introducing PRECIP: An API for Managing Repeatable Experiments in the Cloud. CloudCom (2) 2013: 19-26 - [c4]Michael McLennan, Steven M. Clark, Frank McKenna, Ewa Deelman, Mats Rynge, Karan Vahi, Derrick Kearney, Carol X. Song:
Bringing Scientific Workflow to the Masses via Pegasus and HUBzero. IWSG 2013 - [c3]Anirban Mandal, Paul Ruth, Ilya Baldin, Yufeng Xin, Claris Castillo, Mats Rynge, Ewa Deelman:
Evaluating I/O aware network management for scientific workflows on networked clouds. NDM@SC 2013: 2:1-2:10 - [i3]Aram Avetisyan, Saptaparna Bhattacharya, Meenakshi Narain, Sanjay Padhi, Jim Hirschauer, Tanya Levshina, Patricia McBride, Chander Sehgal, Marko Slyz, Mats Rynge, Sudhir Malik, John Stupak III:
Snowmass Energy Frontier Simulations using the Open Science Grid (A Snowmass 2013 whitepaper). CoRR abs/1308.0843 (2013) - [i2]G. Bruce Berriman, Ewa Deelman, John Good, Gideon Juve, Jamie Kinney, Ann Merrihew, Mats Rynge:
Creating A Galactic Plane Atlas With Amazon Web Services. CoRR abs/1312.6723 (2013) - 2012
- [c2]Mats Rynge, Scott Callaghan, Ewa Deelman, Gideon Juve, Gaurang Mehta, Karan Vahi, Philip J. Maechling:
Enabling large-scale scientific workflows on petascale resources using MPI master/worker. XSEDE 2012: 49:1-49:8 - [i1]G. Bruce Berriman, Carolyn Brinkworth, Dawn M. Gelino, Dennis K. Wittman, Ewa Deelman, Gideon Juve, Mats Rynge, Jamie Kinney:
A Tale Of 160 Scientists, Three Applications, A Workshop and A Cloud. CoRR abs/1211.4055 (2012) - 2011
- [c1]Mats Rynge, Gideon Juve, Gaurang Mehta, Ewa Deelman, Krista Larson, Burt Holzman, Igor Sfiligoi, Frank Würthwein, G. Bruce Berriman, Scott Callaghan:
Experiences Using GlideinWMS and the Corral Frontend across Cyberinfrastructures. eScience 2011: 311-318
Coauthor Index
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