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Idoia Ochoa
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2020 – today
- 2024
- [j24]Guillermo Dufort y Álvarez
, Martí Xargay-Ferrer, Alba Pagès-Zamora, Idoia Ochoa:
EMVC-2: an efficient single-nucleotide variant caller based on expectation maximization. Bioinform. 40(3) (2024) - 2023
- [j23]Leah L. Weber, Chuanyi Zhang, Idoia Ochoa, Mohammed El-Kebir
:
Phertilizer: Growing a clonal tree from ultra-low coverage single-cell DNA sequencing of tumors. PLoS Comput. Biol. 19(10) (2023) - [i5]Jesus de la Fuente, Guillermo Serrano, Uxía Veleiro, Mikel Casals, Laura Vera, Marija Pizurica, Antonio Pineda-Lucena, Idoia Ochoa, Silve Vicent, Olivier Gevaert, Mikel Hernaez:
Towards a more inductive world for drug repurposing approaches. CoRR abs/2311.12670 (2023) - 2022
- [j22]Alba Pagès-Zamora
, Idoia Ochoa
, Gonzalo Ruiz Cavero, Pol Villalvilla-Ornat:
Unsupervised ensemble learning for genome sequencing. Pattern Recognit. 129: 108721 (2022) - 2021
- [j21]Felix Hanau
, Hannes L. Röst, Idoia Ochoa
:
mspack: efficient lossless and lossy mass spectrometry data compression. Bioinform. 37(21): 3923-3925 (2021) - [j20]Guillermo Dufort y Álvarez
, Gadiel Seroussi, Pablo Smircich
, José Sotelo-Silveira, Idoia Ochoa
, Álvaro Martín:
RENANO: a REference-based compressor for NANOpore FASTQ files. Bioinform. 37(24): 4862-4864 (2021) - [c13]Mohit Goyal, Kedar Tatwawadi, Shubham Chandak, Idoia Ochoa
:
DZip: improved general-purpose loss less compression based on novel neural network modeling. DCC 2021: 153-162 - 2020
- [j19]Jan Voges
, Tom Paridaens
, Fabian Müntefering
, Liudmila S. Mainzer, Brian Bliss, Mingyu Yang, Idoia Ochoa
, Jan Fostier
, Jörn Ostermann, Mikel Hernaez
:
GABAC: an arithmetic coding solution for genomic data. Bioinform. 36(7): 2275-2277 (2020) - [j18]Chuanyi Zhang
, Idoia Ochoa
:
VEF: a variant filtering tool based on ensemble methods. Bioinform. 36(8): 2328-2336 (2020) - [j17]Guillermo Dufort y Álvarez, Gadiel Seroussi, Pablo Smircich
, José Sotelo, Idoia Ochoa
, Álvaro Martín, Inanç Birol:
ENANO: Encoder for NANOpore FASTQ files. Bioinform. 36(16): 4506-4507 (2020) - [j16]Qingxi Meng, Idoia Ochoa
, Mikel Hernaez
:
GPress: a framework for querying general feature format (GFF) files and expression files in a compressed form. Bioinform. 36(18): 4810-4812 (2020) - [j15]Albert No
, Mikel Hernaez
, Idoia Ochoa
:
CROMqs: An infinitesimal successive refinement lossy compressor for the quality scores. J. Bioinform. Comput. Biol. 18(6): 2050031:1-2050031:22 (2020) - [c12]Mohit Goyal, Kedar Tatwawadi, Shubham Chandak
, Idoia Ochoa
:
DZip: Improved General-Purpose Lossless Compression Based on Novel Neural Network Modeling. DCC 2020: 372
2010 – 2019
- 2019
- [j14]Shubham Chandak
, Kedar Tatwawadi, Idoia Ochoa
, Mikel Hernaez
, Tsachy Weissman:
SPRING: a next-generation compressor for FASTQ data. Bioinform. 35(15): 2674-2676 (2019) - [j13]Ruochen Yang
, Xi Chen
, Idoia Ochoa
:
MassComp, a lossless compressor for mass spectrometry data. BMC Bioinform. 20(1): 368:1-368:10 (2019) - [c11]Idoia Ochoa
, Hongyi Li, Florian Baumgarte, Charles Hergenrother, Jan Voges, Mikel Hernaez
:
AliCo: A New Efficient Representation for SAM Files. DCC 2019: 93-102 - [c10]Mohit Goyal, Kedar Tatwawadi, Shubham Chandak
, Idoia Ochoa
:
DeepZip: Lossless Data Compression Using Recurrent Neural Networks. DCC 2019: 575 - [c9]Guillermo Dufort y Álvarez, Gadiel Seroussi, Pablo Smircich
, José Sotelo, Idoia Ochoa
, Álvaro Martín:
Compression of Nanopore FASTQ Files. IWBBIO (1) 2019: 36-47 - [i4]Mohit Goyal, Kedar Tatwawadi, Shubham Chandak, Idoia Ochoa:
DZip: improved general-purpose lossless compression based on novel neural network modeling. CoRR abs/1911.03572 (2019) - 2018
- [j12]Greg Malysa, Mikel Hernaez
, Idoia Ochoa, Milind Rao, Karthik Ganesan
, Tsachy Weissman:
QVZ: lossy compression of quality values. Bioinform. 34(1): 179 (2018) - [j11]Jianhao Peng, Olgica Milenkovic, Idoia Ochoa
:
METHCOMP: a special purpose compression platform for DNA methylation data. Bioinform. 34(15): 2654-2656 (2018) - [j10]Lukasz Roguski, Idoia Ochoa
, Mikel Hernaez
, Sebastian Deorowicz
:
FaStore: a space-saving solution for raw sequencing data. Bioinform. 34(16): 2748-2756 (2018) - [i3]Mohit Goyal, Kedar Tatwawadi, Shubham Chandak, Idoia Ochoa:
DeepZip: Lossless Data Compression using Recurrent Neural Networks. CoRR abs/1811.08162 (2018) - 2017
- [j9]Idoia Ochoa
, Mikel Hernaez
, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley:
Effect of lossy compression of quality scores on variant calling. Briefings Bioinform. 18(2): 183-194 (2017) - [c8]Reggy Long, Mikel Hernaez
, Idoia Ochoa
, Tsachy Weissman:
GeneComp, a New Reference-Based Compressor for SAM Files. DCC 2017: 330-339 - 2016
- [j8]Sebastian Deorowicz
, Szymon Grabowski
, Idoia Ochoa
, Mikel Hernaez
, Tsachy Weissman:
Comment on: 'ERGC: an efficient referential genome compression algorithm'. Bioinform. 32(7): 1115-1117 (2016) - [j7]Kedar Tatwawadi, Mikel Hernaez
, Idoia Ochoa
, Tsachy Weissman:
GTRAC: fast retrieval from compressed collections of genomic variants. Bioinform. 32(17): 479-486 (2016) - [c7]Idoia Ochoa
, Mikel Hernaez
, Rachel L. Goldfeder, Tsachy Weissman, Euan A. Ashley:
Denoising of Quality Scores for Boosted Inference and Reduced Storage. DCC 2016: 251-260 - [c6]Mikel Hernaez
, Idoia Ochoa
, Tsachy Weissman:
A Cluster-Based Approach to Compression of Quality Scores. DCC 2016: 261-270 - [c5]Idoia Ochoa
, Albert No, Mikel Hernaez
, Tsachy Weissman:
CROMqs: an infinitesimal successive refinement lossy compressor for the quality scores. ITW 2016: 121-125 - 2015
- [j6]Idoia Ochoa
, Mikel Hernaez
, Tsachy Weissman:
iDoComp: a compression scheme for assembled genomes. Bioinform. 31(5): 626-633 (2015) - [j5]Greg Malysa, Mikel Hernaez
, Idoia Ochoa
, Milind Rao, Karthik Ganesan
, Tsachy Weissman:
QVZ: lossy compression of quality values. Bioinform. 31(19): 3122-3129 (2015) - 2014
- [j4]Idoia Ochoa
, Mikel Hernaez
, Tsachy Weissman:
Aligned genomic data compression via improved modeling. J. Bioinform. Comput. Biol. 12(6) (2014) - [c4]Idoia Ochoa
, Amir Ingber, Tsachy Weissman:
Compression Schemes for Similarity Queries. DCC 2014: 332-341 - 2013
- [j3]Idoia Ochoa
, Himanshu Asnani, Dinesh Bharadia, Mainak Chowdhury, Tsachy Weissman, Golan Yona:
QualComp: a new lossy compressor for quality scores based on rate distortion theory. BMC Bioinform. 14: 187 (2013) - [c3]Idoia Ochoa
, Amir Ingber, Tsachy Weissman:
Efficient similarity queries via lossy compression. Allerton 2013: 883-889 - 2012
- [c2]Bobbie Chern, Idoia Ochoa
, Alexandros Manolakos, Albert No, Kartik Venkat, Tsachy Weissman:
Reference based genome compression. ITW 2012: 427-431 - [i2]Bobbie Chern, Idoia Ochoa, Alexandros Manolakos, Albert No, Kartik Venkat, Tsachy Weissman:
Reference Based Genome Compression. CoRR abs/1204.1912 (2012) - [i1]Himanshu Asnani, Dinesh Bharadia, Mainak Chowdhury, Idoia Ochoa, Itai Sharon, Tsachy Weissman:
Lossy Compression of Quality Values via Rate Distortion Theory. CoRR abs/1207.5184 (2012) - 2010
- [j2]Idoia Ochoa
, Pedro M. Crespo
, Javier Del Ser
, Mikel Hernaez
:
Turbo joint source-channel coding of non-uniform memoryless sources in the bandwidth-limited regime. IEEE Commun. Lett. 14(4): 336-338 (2010) - [j1]Idoia Ochoa
, Pedro M. Crespo
, Mikel Hernaez
:
LDPC Codes for Non-Uniform Memoryless Sources and Unequal Energy Allocation. IEEE Commun. Lett. 14(9): 794-796 (2010) - [c1]Idoia Ochoa
, Pedro M. Crespo
, Javier Del Ser, Mikel Hernaez
:
Joint Turbo Coding and Source-Controlled Modulation of Cycle-Stationary Sources in the Bandwidth-Limited Regime. MOBILIGHT 2010: 618-625
Coauthor Index
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last updated on 2024-06-10 20:30 CEST by the dblp team
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