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ORCIDMark S. Neubauer
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- affiliation: University of Illinois at Urbana-Champaign, Department of Electrical and Computer Engineering, Urbana, IL, USA
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Journal Articles
- 2023
[j7]Wahid Bhimji, Dale Carder, Eli Dart
, Javier M. Duarte, Ian Fisk, Robert W. Gardner, Chin Guok, Bo Jayatilaka, Tom Lehman, M. Lin, Carlos Maltzahn, Shawn McKee, Mark S. Neubauer, O. Rind, Oksana Shadura, N. V. Tran, P. van Gemmeren, Gordon Watts, B. A. Weaver, Frank Würthwein:
Snowmass 2021 Computational Frontier CompF4 Topical Group Report Storage and Processing Resource Access. Comput. Softw. Big Sci. 7(1): 5 (2023)- [j6]Ayush Khot, Mark S. Neubauer, Avik Roy:
A detailed study of interpretability of deep neural network based top taggers. Mach. Learn. Sci. Technol. 4(3): 35003 (2023) - [j5]Javier M. Duarte, Haoyang Li, Avik Roy, Ruike Zhu, E. A. Huerta, Daniel Diaz, Philip C. Harris, Raghav Kansal, Daniel S. Katz, Ishaan H. Kavoori, Volodymyr V. Kindratenko, Farouk Mokhtar, Mark S. Neubauer, Sang Eon Park, Melissa Quinnan, Roger Rusack, Zhizhen Zhao:
FAIR AI models in high energy physics. Mach. Learn. Sci. Technol. 4(4): 45062 (2023) - 2022
- [j4]Allison McCarn Deiana, Nhan Tran, Joshua Agar, Michaela Blott, Giuseppe Di Guglielmo, Javier M. Duarte, Philip C. Harris, Scott Hauck, Mia Liu, Mark S. Neubauer, Jennifer Ngadiuba, Seda Ogrenci Memik, Maurizio Pierini, Thea Aarrestad, Steffen Bähr, Jürgen Becker, Anne-Sophie Berthold, Richard J. Bonventre, Tomás E. Müller-Bravo, Markus Diefenthaler, Zhen Dong, Nick Fritzsche, Amir Gholami, Ekaterina Govorkova, Dongning Guo, Kyle J. Hazelwood, Christian Herwig, Babar Khan, Sehoon Kim, Thomas Klijnsma, Yaling Liu, Kin Ho Lo, Tri Nguyen, Gianantonio Pezzullo, Seyedramin Rasoulinezhad, Ryan A. Rivera, Kate Scholberg, Justin Selig, Sougata Sen, Dmitri Strukov, William Tang, Savannah Thais, Kai Lukas Unger, Ricardo Vilalta, Belinavon Krosigk, Shen Wang, Thomas K. Warburton:
Applications and Techniques for Fast Machine Learning in Science. Frontiers Big Data 5: 787421 (2022) - [j3]Abdelrahman Elabd, Vesal Razavimaleki, Shi-Yu Huang, Javier M. Duarte, Markus Atkinson, Gage DeZoort, Peter Elmer, Scott Hauck, Jin-Xuan Hu, Shih-Chieh Hsu, Bo-Cheng Lai, Mark S. Neubauer, Isobel Ojalvo, Savannah Thais, Matthew Trahms:
Graph Neural Networks for Charged Particle Tracking on FPGAs. Frontiers Big Data 5: 828666 (2022) - 2021
- [j2]Gage DeZoort, Savannah Thais, Javier M. Duarte, Vesal Razavimaleki, Markus Atkinson, Isobel Ojalvo, Mark S. Neubauer, Peter Elmer:
Charged Particle Tracking via Edge-Classifying Interaction Networks. Comput. Softw. Big Sci. 5(1) (2021) - 2019
- [j1]E. A. Huerta, Roland Haas, Shantenu Jha, Mark S. Neubauer, Daniel S. Katz:
Supporting High-Performance and High-Throughput Computing for Experimental Science. Comput. Softw. Big Sci. 3(1) (2019)
Conference and Workshop Papers
- 2023
- [c2]Shi-Yu Huang, Yun-Chen Yang, Yu-Ru Su, Bo-Cheng Lai, Javier M. Duarte, Scott Hauck, Shih-Chieh Hsu, Jin-Xuan Hu, Mark S. Neubauer:
Low Latency Edge Classification GNN for Particle Trajectory Tracking on FPGAs. FPL 2023: 294-298 - 2018
- [c1]Maxim Belkin, Roland Haas, Galen Wesley Arnold, Hon Wai Leong, Eliu A. Huerta, David Lesny, Mark S. Neubauer:
Container solutions for HPC Systems: A Case Study of Using Shifter on Blue Waters. PEARC 2018: 43:1-43:8
Informal and Other Publications
- 2023
- [i22]Shi-Yu Huang, Yun-Chen Yang, Yu-Ru Su, Bo-Cheng Lai, Javier M. Duarte, Scott Hauck, Shih-Chieh Hsu, Jin-Xuan Hu, Mark S. Neubauer:
Low Latency Edge Classification GNN for Particle Trajectory Tracking on FPGAs. CoRR abs/2306.11330 (2023) - 2022
- [i21]Savannah Thais, Paolo Calafiura, Grigorios Chachamis, Gage DeZoort, Javier M. Duarte, Sanmay Ganguly, Michael Kagan, Daniel Murnane, Mark S. Neubauer, Kazuhiro Terao:
Graph Neural Networks in Particle Physics: Implementations, Innovations, and Challenges. CoRR abs/2203.12852 (2022) - [i20]Philip C. Harris, Erik Katsavounidis, William Patrick McCormack, Dylan S. Rankin, Yongbin Feng, Abhijith Gandrakota, Christian Herwig, Burt Holzman, Kevin Pedro, Nhan Tran, Tingjun Yang, Jennifer Ngadiuba, Michael Coughlin, Scott Hauck, Shih-Chieh Hsu, Elham E Khoda, Deming Chen, Mark S. Neubauer, Javier M. Duarte, Georgia Karagiorgi, Mia Liu:
Physics Community Needs, Tools, and Resources for Machine Learning. CoRR abs/2203.16255 (2022) - [i19]Mark S. Neubauer, Avik Roy:
Explainable AI for High Energy Physics. CoRR abs/2206.06632 (2022) - [i18]Gabriele Benelli, Thomas Y. Chen, Javier M. Duarte, Matthew Feickert, Matthew J. Graham, Lindsey Gray, Dan Hackett, Philip C. Harris, Shih-Chieh Hsu, Gregor Kasieczka, Elham E Khoda, Matthias Komm, Mia Liu, Mark S. Neubauer, Scarlet Norberg, Alexx Perloff, Marcel Rieger, Claire Savard, Kazuhiro Terao, Savannah Thais, Avik Roy, Jean-Roch Vlimant, Grigorios Chachamis:
Data Science and Machine Learning in Education. CoRR abs/2207.09060 (2022) - [i17]W. Bhimij, Dale Carder, Eli Dart, Javier M. Duarte, Ian Fisk, Robert W. Gardner, Chin Guok, Bo Jayatilaka, Tom Lehman, M. Lin, Carlos Maltzahn, Shawn McKee, Mark S. Neubauer, O. Rind, Oksana Shadura, N. V. Tran, P. van Gemmeren, Gordon Watts, B. A. Weaver, Frank Würthwein:
Snowmass 2021 Computational Frontier CompF4 Topical Group Report: Storage and Processing Resource Access. CoRR abs/2209.08868 (2022) - [i16]Ayush Khot, Mark S. Neubauer, Avik Roy:
A Detailed Study of Interpretability of Deep Neural Network based Top Taggers. CoRR abs/2210.04371 (2022) - [i15]E. A. Huerta, Ben Blaiszik, L. Catherine Brinson, Kristofer E. Bouchard, Daniel Diaz, Caterina Doglioni, Javier M. Duarte, Murali Emani, Ian T. Foster, Geoffrey C. Fox, Philip C. Harris, Lukas Heinrich, Shantenu Jha, Daniel S. Katz, Volodymyr V. Kindratenko, Christine R. Kirkpatrick, Kati Lassila-Perini, Ravi K. Madduri, Mark S. Neubauer, Fotis E. Psomopoulos, Avik Roy, Oliver Rübel, Zhizhen Zhao, Ruike Zhu:
FAIR for AI: An interdisciplinary, international, inclusive, and diverse community building perspective. CoRR abs/2210.08973 (2022) - [i14]Javier M. Duarte, Haoyang Li, Avik Roy, Ruike Zhu, E. A. Huerta, Daniel Diaz, Philip C. Harris, Raghav Kansal, Daniel S. Katz, Ishaan H. Kavoori, Volodymyr V. Kindratenko, Farouk Mokhtar, Mark S. Neubauer, Sang Eon Park, Melissa Quinnan, Roger Rusack, Zhizhen Zhao:
FAIR AI Models in High Energy Physics. CoRR abs/2212.05081 (2022) - 2021
- [i13]Xiangyang Ju, Daniel Murnane, Paolo Calafiura, Nicholas Choma, Sean Conlon, Steven Farrell, Yaoyuan Xu, Maria Spiropulu, Jean-Roch Vlimant, Adam Aurisano, Jeremy Hewes, Giuseppe Cerati, Lindsey Gray, Thomas Klijnsma, Jim Kowalkowski, Markus Atkinson, Mark S. Neubauer, Gage DeZoort, Savannah Thais, Aditi Chauhan, Alex Schuy, Shih-Chieh Hsu, Alexandra Ballow, Alina Lazar:
Physics and Computing Performance of the Exa.TrkX TrackML Pipeline. CoRR abs/2103.06995 (2021) - [i12]Gage DeZoort, Savannah Thais, Isobel Ojalvo, Peter Elmer, Vesal Razavimaleki, Javier M. Duarte, Markus Atkinson, Mark S. Neubauer:
Charged particle tracking via edge-classifying interaction networks. CoRR abs/2103.16701 (2021) - [i11]Yifan Chen, E. A. Huerta, Javier M. Duarte, Philip C. Harris, Daniel S. Katz, Mark S. Neubauer, Daniel Diaz, Farouk Mokhtar, Raghav Kansal, Sang Eon Park, Volodymyr V. Kindratenko, Zhizhen Zhao, Roger Rusack:
A FAIR and AI-ready Higgs Boson Decay Dataset. CoRR abs/2108.02214 (2021) - [i10]Allison McCarn Deiana, Nhan Tran, Joshua Agar, Michaela Blott, Giuseppe Di Guglielmo, Javier M. Duarte, Philip C. Harris, Scott Hauck, Mia Liu, Mark S. Neubauer, Jennifer Ngadiuba, Seda Ogrenci Memik, Maurizio Pierini, Thea Aarrestad, Steffen Bähr, Jürgen Becker, Anne-Sophie Berthold, Richard J. Bonventre, Tomás E. Müller-Bravo, Markus Diefenthaler, Zhen Dong, Nick Fritzsche, Amir Gholami, Ekaterina Govorkova, Kyle J. Hazelwood, Christian Herwig, Babar Khan, Sehoon Kim, Thomas Klijnsma, Yaling Liu, Kin Ho Lo, Tri Nguyen, Gianantonio Pezzullo, Seyedramin Rasoulinezhad, Ryan A. Rivera, Kate Scholberg, Justin Selig, Sougata Sen, Dmitri Strukov, William Tang, Savannah Thais, Kai Lukas Unger, Ricardo Vilalta, Belinavon Krosigk, Thomas K. Warburton, Maria Acosta Flechas, Anthony Aportela, Thomas Calvet, Leonardo Cristella, Daniel Diaz, Caterina Doglioni, Maria Domenica Galati, Elham E Khoda, Farah Fahim, Davide Giri, Benjamin Hawks, Duc Hoang, Burt Holzman, Shih-Chieh Hsu, Sergo Jindariani, Iris Johnson, Raghav Kansal, Ryan Kastner, Erik Katsavounidis, Jeffrey D. Krupa, Pan Li, Sandeep Madireddy, Ethan Marx, Patrick McCormack, Andres Meza, Jovan Mitrevski, Mohammed Attia Mohammed, Farouk Mokhtar, Eric A. Moreno, Srishti Nagu, Rohin Narayan, Noah Palladino, Zhiqiang Que, Sang Eon Park, Subramanian Ramamoorthy, Dylan S. Rankin, Simon Rothman, Ashish Sharma, Sioni Summers, Pietro Vischia, Jean-Roch Vlimant, Olivia Weng:
Applications and Techniques for Fast Machine Learning in Science. CoRR abs/2110.13041 (2021) - [i9]Abdelrahman Elabd, Vesal Razavimaleki, Shi-Yu Huang, Javier M. Duarte, Markus Atkinson, Gage DeZoort, Peter Elmer, Jin-Xuan Hu, Shih-Chieh Hsu, Bo-Cheng Lai, Mark S. Neubauer, Isobel Ojalvo, Savannah Thais:
Graph Neural Networks for Charged Particle Tracking on FPGAs. CoRR abs/2112.02048 (2021) - 2020
- [i8]Robert W. Gardner, Lincoln Bryant, Mark S. Neubauer, Frank Würthwein, Judith Stephen, Andrew A. Chien:
The Scalable Systems Laboratory: a Platform for Software Innovation for HEP. CoRR abs/2005.06151 (2020) - [i7]Daniel S. Katz, Sudhir Malik, Mark S. Neubauer, Graeme Andrew Stewart, Kétévi A. Assamagan, Erin A. Becker, Neil P. Chue Hong, Ian A. Cosden, Samuel Meehan, Edward J. W. Moyse, Adrian M. Price-Whelan, Elizabeth Sexton-Kennedy, Meirin Oan Evans, Matthew Feickert, Clemens Lange, Kilian Lieret, Rob Quick, Arturo Sánchez Pineda, Christopher D. Tunnell:
Software Sustainability & High Energy Physics. CoRR abs/2010.05102 (2020) - [i6]Aneesh Heintz, Vesal Razavimaleki, Javier M. Duarte, Gage DeZoort, Isobel Ojalvo, Savannah Thais, Markus Atkinson, Mark S. Neubauer, Lindsey Gray, Sergo Jindariani, Nhan Tran, Philip C. Harris, Dylan S. Rankin, Thea Aarrestad, Vladimir Loncar, Maurizio Pierini, Sioni Summers, Jennifer Ngadiuba, Mia Liu, Edward Kreinar, Zhenbin Wu:
Accelerated Charged Particle Tracking with Graph Neural Networks on FPGAs. CoRR abs/2012.01563 (2020) - 2019
- [i5]Gabrielle Allen, Igor Andreoni, Etienne Bachelet, G. Bruce Berriman, Federica B. Bianco, Rahul Biswas, Matias Carrasco Kind, Kyle Chard, Minsik Cho, Philip S. Cowperthwaite, Zachariah B. Etienne, Daniel George, Tom Gibbs, Matthew J. Graham, William Gropp, Anushri Gupta, Roland Haas, E. A. Huerta, Elise Jennings, Daniel S. Katz, Asad Khan, Volodymyr V. Kindratenko, William T. C. Kramer, Xin Liu, Ashish Mahabal, Kenton McHenry, J. M. Miller, Mark S. Neubauer, Steve Oberlin, Alexander Reinefeld, Shawn Rosofsky, Milton Ruiz, Aaron Saxton, Bernard F. Schutz, Alexander G. Schwing, Ed Seidel, Stuart L. Shapiro, Hongyu Shen, Yue Shen, Brigitta Miksztai-Réthey, Lunan Sun, John Towns, Antonios Tsokaros, Wei Wei, Jack Wells, Timothy J. Williams, Jinjun Xiong, Zhizhen Zhao:
Deep Learning for Multi-Messenger Astrophysics: A Gateway for Discovery in the Big Data Era. CoRR abs/1902.00522 (2019) - [i4]E. A. Huerta, Gabrielle Allen, Igor Andreoni, Javier Mauricio Antelis, Etienne Bachelet, G. Bruce Berriman, Federica B. Bianco, Rahul Biswas, Matias Carrasco Kind, Kyle Chard, Minsik Cho, Philip S. Cowperthwaite, Zachariah B. Etienne, Maya Fishbach, Francisco Förster, Daniel George, Tom Gibbs, Matthew J. Graham, William Gropp, Robert A. Gruendl, Anushri Gupta, Roland Haas, Sarah Habib, Elise Jennings, Margaret W. G. Johnson, Erik Katsavounidis, Daniel S. Katz, Asad Khan, Volodymyr V. Kindratenko, William T. C. Kramer, Xin Liu, Ashish Mahabal, Zsuzsa Márka, Kenton McHenry, Jonah Miller, Claudia Moreno, Mark S. Neubauer, Steve Oberlin, Alexander R. Olivas, Donald Petravick, Adam Rebei, Shawn Rosofsky, Milton Ruiz, Aaron Saxton, Bernard F. Schutz, Alexander G. Schwing, Ed Seidel, Stuart L. Shapiro, Hongyu Shen, Yue Shen, Leo Singer, Brigitta M. Sipocz, Lunan Sun, John Towns, Antonios Tsokaros, Wei Wei, Jack Wells, Timothy J. Williams, Jinjun Xiong, Zhizhen Zhao:
Enabling real-time multi-messenger astrophysics discoveries with deep learning. CoRR abs/1911.11779 (2019) - 2018
- [i3]Kim Albertsson, Piero Altoe, Dustin Anderson, Michael Andrews, Juan Pedro Araque Espinosa, Adam Aurisano, Laurent Basara, Adrian Bevan, Wahid Bhimji, Daniele Bonacorsi, Paolo Calafiura, Mario Campanelli, Louis Capps, Federico Carminati, Stefano Carrazza, Taylor Childers, Elias Coniavitis, Kyle Cranmer, Claire David, Douglas Davis, Javier M. Duarte, Martin Erdmann, Jonas Eschle, Amir Farbin, Matthew Feickert, Nuno Filipe Castro, Conor Fitzpatrick, Michele Floris, Alessandra Forti, Jordi Garra-Tico, Jochen Gemmler, Maria Girone, Paul Glaysher, Sergei Gleyzer, Vladimir V. Gligorov, Tobias Golling, Jonas Graw, Lindsey Gray, Dick Greenwood, Thomas Hacker, John Harvey, Benedikt Hegner, Lukas Heinrich, Ben Hooberman, Johannes Junggeburth, Michael Kagan, Meghan Kane, Konstantin Kanishchev, Przemyslaw Karpinski, Zahari Kassabov, Gaurav Kaul, Dorian Kcira, Thomas Keck, Alexei Klimentov, Jim Kowalkowski, Luke Kreczko, Alexander Kurepin, Rob Kutschke, Valentin Kuznetsov, Nicolas Köhler, Igor Lakomov, Kevin Lannon, Mario Lassnig, Antonio Limosani, Gilles Louppe, Aashrita Mangu, Pere Mato, Narain Meenakshi, Helge Meinhard, Dario Menasce, Lorenzo Moneta, Seth Moortgat, Mark S. Neubauer, Harvey B. Newman, Hans Pabst, Michela Paganini, Manfred Paulini, Gabriel N. Perdue, Uzziel Perez, Attilio Picazio, Jim Pivarski, Harrison Prosper, Fernanda Psihas, Alexander Radovic, Ryan Reece, Aurelius Rinkevicius, Eduardo Rodrigues, Jamal Rorie, David Rousseau, Aaron Sauers, Steven Schramm, Ariel Schwartzman, Horst Severini, Paul Seyfert, Filip Siroky, Konstantin Skazytkin, Mike Sokoloff, Graeme Andrew Stewart, Bob Stienen, Ian Stockdale, Giles Chatham Strong, Savannah Thais, Karen Tomko, Eli Upfal, Emanuele Usai, Andrey Ustyuzhanin, Martin Vala, Sofia Vallecorsa, Mauro Verzetti, Xavier Vilasís-Cardona, Jean-Roch Vlimant, Ilija Vukotic, Sean-Jiun Wang, Gordon Watts, Michael Williams, Wenjing Wu, Stefan Wunsch, Omar Zapata:
Machine Learning in High Energy Physics Community White Paper. CoRR abs/1807.02876 (2018) - [i2]Maxim Belkin, Roland Haas, Galen Wesley Arnold, Hon Wai Leong, Eliu A. Huerta, David Lesny, Mark S. Neubauer:
Container solutions for HPC Systems: A Case Study of Using Shifter on Blue Waters. CoRR abs/1808.00556 (2018) - [i1]E. A. Huerta, Roland Haas, Shantenu Jha, Mark S. Neubauer, Daniel S. Katz:
Supporting High-Performance and High-Throughput Computing for Experimental Science. CoRR abs/1810.03056 (2018)
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