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2020 – today
- 2024
[j19]Vincent Lam, Shivam Sharma, John L. Spouge
, I. King Jordan, Leonardo Mariño-Ramírez:
Landscape of racial and ethnic health disparities in the All of Us Research Program. Database J. Biol. Databases Curation 2024 (2024)- 2023
- [j18]Martin C. Frith, Jim Shaw, John L. Spouge:
How to optimally sample a sequence for rapid analysis. Bioinform. 39(2) (2023) - 2022
- [j17]John L. Spouge:
A closed formula relevant to 'Theory of local k-mer selection with applications to long-read alignment' by Jim Shaw and Yun William Yu. Bioinform. 38(20): 4848-4849 (2022) - 2020
- [j16]John L. Spouge, Joseph M. Ziegelbauer, Mileidy Gonzalez:
A linear-time algorithm that avoids inverses and computes Jackknife (leave-one-out) products like convolutions or other operators in commutative semigroups. Algorithms Mol. Biol. 15(1): 17 (2020)
2010 – 2019
- 2019
- [j15]Hyrum D. Carroll, John L. Spouge, Mileidy Gonzalez:
MultiDomainBenchmark: a multi-domain query and subject database suite. BMC Bioinform. 20(1): 77:1-77:9 (2019) - 2016
- [j14]Sergey Sheetlin, Yonil Park, Martin C. Frith, John L. Spouge:
ALP & FALP: C++ libraries for pairwise local alignment E-values. Bioinform. 32(2): 304-305 (2016) - [j13]Natalia Acevedo-Luna, Leonardo Mariño-Ramírez, Armand Halbert, Ulla Hansen, David Landsman, John L. Spouge:
Most of the tight positional conservation of transcription factor binding sites near the transcription start site reflects their co-localization within regulatory modules. BMC Bioinform. 17: 479:1-479:12 (2016) - 2015
- [j12]Hyrum D. Carroll, Alex C. Williams, Anthony G. Davis, John L. Spouge:
Improving Retrieval Efficacy of Homology Searches Using the False Discovery Rate. IEEE ACM Trans. Comput. Biol. Bioinform. 12(3): 531-537 (2015) - 2014
- [j11]Sergey L. Sheetlin, Yonil Park, Martin C. Frith, John L. Spouge:
Frameshift alignment: statistics and post-genomic applications. Bioinform. 30(24): 3575-3582 (2014) - [j10]John L. Spouge, Leonardo Mariño-Ramírez, Sergey L. Sheetlin:
Searching for repeats, as an example of using the generalised Ruzzo-Tompa algorithm to find optimal subsequences with gaps. Int. J. Bioinform. Res. Appl. 10(4/5): 384-408 (2014) - 2013
- [c3]Hyrum D. Carroll, Alex C. Williams, Anthony G. Davis, John L. Spouge:
False Discovery Rate for Homology Searches. BSB 2013: 194-201 - 2012
- [j9]Susanta Tewari, John L. Spouge:
Software: an open-source and scalable framework for exact calculations in coalescent theory. BMC Bioinform. 13: 257 (2012) - [c2]John L. Spouge, Leonardo Mariño-Ramírez, Sergey Sheetlin:
The ruzzo-tompa algorithm can find the maximal paths in weighted, directed graphs on a one-dimensional lattice. ICCABS 2012: 1-6 - [e1]Sorin Istrail, Ion I. Mandoiu, Mihai Pop, Sanguthevar Rajasekaran, John L. Spouge:
IEEE 2nd International Conference on Computational Advances in Bio and Medical Sciences, ICCABS 2012, Las Vegas, NV, USA, February 23-25, 2012. IEEE Computer Society 2012, ISBN 978-1-4673-1320-9 [contents] - 2010
- [j8]Hyrum D. Carroll, Maricel G. Kann, Sergey Sheetlin, John L. Spouge:
Threshold Average Precision (TAP-k): a measure of retrieval designed for bioinformatics. Bioinform. 26(14): 1708-1713 (2010)
2000 – 2009
- 2008
- [j7]Nak-Kyeong Kim, Kannan Tharakaraman, Leonardo Mariño-Ramírez, John L. Spouge:
Finding sequence motifs with Bayesian models incorporating positional information: an application to transcription factor binding sites. BMC Bioinform. 9 (2008) - 2006
- [j6]Nak-Kyeong Kim, Kannan Tharakaraman, John L. Spouge:
Adding sequence context to a Markov background model improves the identification of regulatory elements. Bioinform. 22(23): 2870-2875 (2006) - [j5]Kannan Tharakaraman, Leonardo Mariño-Ramírez, Sergey Sheetlin, David Landsman, John L. Spouge:
Scanning sequences after Gibbs sampling to find multiple occurrences of functional elements. BMC Bioinform. 7: 408 (2006) - 2005
- [c1]Kannan Tharakaraman, Leonardo Mariño-Ramírez, Sergey Sheetlin, David Landsman, John L. Spouge:
Alignments anchored on genomic landmarks can aid in the identification of regulatory elements. ISMB (Supplement of Bioinformatics) 2005: 440-448 - 2004
- [j4]Yonil Park, John L. Spouge:
Searching for Multiple Words in a Markov Sequence. INFORMS J. Comput. 16(4): 341-347 (2004) - 2002
- [j3]Yonil Park, John L. Spouge:
The correlation error and finite-size correction in an ungapped sequence alignment. Bioinform. 18(9): 1236-1242 (2002) - [j2]Sanguthevar Rajasekaran, X. Jin, John L. Spouge:
The Efficient Computation of Position-Specific Match Scores with the Fast Fourier Transform. J. Comput. Biol. 9(1): 23-33 (2002)
1990 – 1999
- 1991
- [j1]John L. Spouge:
Fast optimal alignment. Comput. Appl. Biosci. 7(1): 1-7 (1991)
Coauthor Index
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