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2020 – today
- 2021
[j10]Ramzan Umarov
, Yu Li, Takahiro Arakawa, Satoshi Takizawa, Xin Gao, Erik Arner:
ReFeaFi: Genome-wide prediction of regulatory elements driving transcription initiation. PLoS Comput. Biol. 17(9) (2021)- [j9]Ramzan Umarov, Yu Li, Erik Arner:
DeepCellState: An autoencoder-based framework for predicting cell type specific transcriptional states induced by drug treatment. PLoS Comput. Biol. 17(10) (2021)
2010 – 2019
- 2017
- [j8]Trisevgeni Rapakoulia, Xin Gao, Yi Huang, Michiel J. L. de Hoon, Mariko Okada-Hatakeyama, Harukazu Suzuki, Erik Arner:
Genome-scale regression analysis reveals a linear relationship for promoters and enhancers after combinatorial drug treatment. Bioinform. 33(23): 3696-3700 (2017) - 2015
- [j7]Stuart Aitken, Shigeyuki Magi, Ahmad M. N. Alhendi, Masayoshi Itoh, Hideya Kawaji, Timo Lassmann, Carsten O. Daub, Erik Arner, Piero Carninci, Alistair R. R. Forrest, Yoshihide Hayashizaki, Levon M. Khachigian, Mariko Okada-Hatakeyama, Colin A. M. Semple:
Transcriptional Dynamics Reveal Critical Roles for Non-coding RNAs in the Immediate-Early Response. PLoS Comput. Biol. 11(4) (2015) - 2011
- [c1]Yasumasa Kimura, Michiel J. L. de Hoon, Shintaro Aoki, Yuri Ishizu, Carsten O. Daub, Alexander Lezhava, Erik Arner, Yoshihide Hayashizaki, Yuki Kawai, Yasushi Kogo:
Optimization of turn-back primers in isothermal amplification. BIBM Workshops 2011: 909-911 - 2010
- [j6]Erik Arner, Yoshihide Hayashizaki, Carsten O. Daub:
NGSView: an extensible open source editor for next-generation sequencing data. Bioinform. 26(1): 125-126 (2010)
2000 – 2009
- 2007
- [j5]Ellen Kindlund, Martti T. Tammi, Erik Arner, Daniel Nilsson, Björn Andersson:
GRAT - genome-scale rapid alignment tool. Comput. Methods Programs Biomed. 86(1): 87-92 (2007) - 2006
- [j4]Erik Arner, Martti T. Tammi, Anh-Nhi Tran, Ellen Kindlund, Björn Andersson:
DNPTrapper: an assembly editing tool for finishing and analysis of complex repeat regions. BMC Bioinform. 7: 155 (2006) - 2004
- [j3]Martti T. Tammi, Erik Arner, Ellen Kindlund, Björn Andersson:
ReDiT: Repeat Discrepancy Tagger-a shotgun assembly finishing aid. Bioinform. 20(5): 803-804 (2004) - 2003
- [j2]Martti T. Tammi, Erik Arner, Björn Andersson:
TRAP: Tandem Repeat Assembly Program produces improved shotgun assemblies of repetitive sequences. Comput. Methods Programs Biomed. 70(1): 47-59 (2003) - 2002
- [j1]Martti T. Tammi, Erik Arner, Tom Britton, Björn Andersson:
Separation of nearly identical repeats in shotgun assemblies using defined nucleotide positions, DNPs. Bioinform. 18(3): 379-388 (2002)
Coauthor Index
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