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ORCIDNicolas Garcelon
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2020 – today
- 2024
[j7]Carole Faviez, Xiaoyi Chen, Nicolas Garcelon
, Mohamad Zaidan, Katy Billot, Friederike Petzold, Hassan Faour, Maxime Douillet, Jean-Michel Rozet, Valerie Cormier-Daire, Tania Attié-Bitach, Stanislas Lyonnet, Sophie Saunier, Anita Burgun:
Objectivizing issues in the diagnosis of complex rare diseases: lessons learned from testing existing diagnosis support systems on ciliopathies. BMC Medical Informatics Decis. Mak. 24(1): 134 (2024)- [c19]Xiaoyi Chen, Junyuan Wang, Carole Faviez, Xiaomeng Wang, Marc Vincent, Rosy Tsopra, Anita Burgun, Nicolas Garcelon:
An Integrated Pipeline for Phenotypic Characterization, Clustering and Visualization of Patient Cohorts in a Rare Disease-Oriented Clinical Data Warehouse. MIE 2024: 1785-1789 - [i2]Antoine Neuraz, Ghislain Vaillant, Camila Arias, Olivier Birot, Kim Tâm Huynh, Thibaut Fabacher, Alice Rogier, Nicolas Garcelon, Ivan Lerner, Bastien Rance, Adrien Coulet:
Facilitating phenotyping from clinical texts: the medkit library. CoRR abs/2409.00164 (2024) - 2023
- [c18]Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Antoine Neuraz, Anita Burgun, Nicolas Garcelon:
The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. MIE 2023: 247-251 - [c17]Xiaoyi Chen, Carole Faviez, Marc Vincent, Sophie Saunier, Nicolas Garcelon, Anita Burgun:
Improving Patient Similarity Using Different Modalities of Phenotypes Extracted from Clinical Narratives. MIE 2023: 1037-1041 - [i1]Sophie Quennelle, Maxime Douillet, Lisa Friedlander, Olivia Boyer, Anita Burgun, Antoine Neuraz, Nicolas Garcelon:
The Smart Data Extractor, a Clinician Friendly Solution to Accelerate and Improve the Data Collection During Clinical Trials. CoRR abs/2308.16537 (2023) - 2022
- [c16]Safa Alsaidi, Miguel Couceiro, Esteban Marquer, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet:
An analogy based framework for patient-stay identification in healthcare. ICCBR Workshops 2022: 68-80 - [c15]Safa Alsaidi, Miguel Couceiro, Sophie Quennelle, Anita Burgun, Nicolas Garcelon, Adrien Coulet:
Exploring Analogical Inference in Healthcare. IARML@IJCAI 2022: 40-50 - [c14]Carole Faviez, Marc Vincent, Nicolas Garcelon, Caroline Michot, Geneviève Baujat, Valerie Cormier-Daire, Sophie Saunier, Xiaoyi Chen, Anita Burgun:
Enriching UMLS-Based Phenotyping of Rare Diseases Using Deep-Learning: Evaluation on Jeune Syndrome. MIE 2022: 844-848 - 2021
- [c13]Mélanie Buy, William Digan, Xiaoyi Chen, Julien Husson, Mickael Ménager, Frédéric Rieux-Laucat, Nicolas Garcelon:
A Multi-Omics Common Data Model for Primary Immunodeficiencies. MedInfo 2021: 56-60 - [c12]Marc Vincent, Maxime Douillet, Ivan Lerner, Antoine Neuraz, Anita Burgun, Nicolas Garcelon:
Using Deep Learning to Improve Phenotyping from Clinical Reports. MedInfo 2021: 282-286 - [c11]Xiaoyi Chen, Carole Faviez, Marc Vincent, Nicolas Garcelon, Sophie Saunier, Anita Burgun:
Identification of Similar Patients Through Medical Concept Embedding from Electronic Health Records: A Feasibility Study for Rare Disease Diagnosis. MIE 2021: 600-604 - 2020
- [c10]Antoine Neuraz, Bastien Rance, Nicolas Garcelon, Leonardo Campillos Llanos, Anita Burgun, Sophie Rosset:
The Impact of Specialized Corpora for Word Embeddings in Natural Langage Understanding. MIE 2020: 432-436
2010 – 2019
- 2019
- [j6]Xiaoyi Chen, Nicolas Garcelon, Antoine Neuraz, Katy Billot, Marc Lelarge, Thomas Bonald, Hugo Garcia, Yoann Martin, Vincent Benoit, Marc Vincent, Hassan Faour, Maxime Douillet, Stanislas Lyonnet, Sophie Saunier, Anita Burgun:
Phenotypic similarity for rare disease: Ciliopathy diagnoses and subtyping. J. Biomed. Informatics 100 (2019) - [c9]Antoine Neuraz, Vincent Looten, Bastien Rance, Nicolas Daniel, Nicolas Garcelon, Leonardo Campillos Llanos, Anita Burgun, Sophie Rosset:
Do You Need Embeddings Trained on a Massive Specialized Corpus for Your Clinical Natural Language Processing Task? MedInfo 2019: 1558-1559 - 2018
- [j5]Nicolas Garcelon, Antoine Neuraz, Rémi Salomon, Hassan Faour, Vincent Benoit, Arthur Delapalme, Arnold Munnich, Anita Burgun, Bastien Rance:
A clinician friendly data warehouse oriented toward narrative reports: Dr. Warehouse. J. Biomed. Informatics 80: 52-63 (2018) - 2017
- [b1]Nicolas Garcelon:
Problématique des entrepôts de données textuelles: dr Warehouse et la recherche translationnelle sur les maladies rares. (Textual data Warehouse challenge: Dr. Warehouse and translational research on rare diseases). Sorbonne Paris Cité, France, 2017 - [j4]Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Anita Burgun:
Improving a full-text search engine: the importance of negation detection and family history context to identify cases in a biomedical data warehouse. J. Am. Medical Informatics Assoc. 24(3): 607-613 (2017) - [j3]Nicolas Garcelon, Antoine Neuraz, Vincent Benoit, Rémi Salomon, Sven Kracker, Felipe Suarez, Nadia Bahi-Buisson, Smail Hadj-Rabia, Alain Fischer, Arnold Munnich, Anita Burgun:
Finding patients using similarity measures in a rare diseases-oriented clinical data warehouse: Dr. Warehouse and the needle in the needle stack. J. Biomed. Informatics 73: 51-61 (2017) - 2014
- [c8]Nicolas Garcelon, Rémi Salomon, Anita Burgun:
Enrichissement sémantique associé à la détection de la négation et des antécédents familiaux dans un entrepôt de données hospitalier. JFIM 2014: 83-93 - 2013
- [c7]Boris Campillo-Gimenez, Nicolas Garcelon, Pascal Jarno, Jean Marc Chapplain, Marc Cuggia:
Full-text Automated Detection of Surgical Site Infections Secondary to Neurosurgery in Rennes, France. MedInfo 2013: 572-575 - 2012
- [c6]Gayo Diallo, Natalia Grabar, Frantz Thiessard, Nicolas Garcelon, Julien Grosjean, Marie Dupuch, Suzanne Bento-Pereira, Bruno Frandji, Stéfan Jacques Darmoni, Marc Cuggia:
Towards complex queries on data from complex patients. AMIA 2012 - [c5]Frantz Thiessard, Fleur Mougin, Gayo Diallo, Vianney Jouhet, Sébastien Cossin, Nicolas Garcelon, Boris Campillo-Gimenez, Wassim Jouini, Julien Grosjean, Philippe Massari, Nicolas Griffon, Marie Dupuch, Fayssal Tayalati, Edwige Dugas, Antonio Balvet, Natalia Grabar, Suzanne Pereira, Bruno Frandji, Stéfan Jacques Darmoni, Marc Cuggia:
RAVEL: Retrieval And Visualization in ELectronic health records. MIE 2012: 194-198 - 2011
- [c4]Marc Cuggia, Nicolas Garcelon, Boris Campillo-Gimenez, Thomas Bernicot, Jean-François Laurent, Etienne Garin, André Happe, Régis Duvauferrier:
Roogle: An Information Retrieval Engine for Clinical Data Warehouse. MIE 2011: 584-588 - 2010
- [c3]Marc Cuggia, Sahar Bayat, Nicolas Garcelon, Lauren Sanders, Florence Rouget, Arnaud Coursin, Patrick Pladys:
A full-text information retrieval system for an epidemiological registry. MedInfo 2010: 491-495
2000 – 2009
- 2007
- [j2]Marc Cuggia, Stéfan Jacques Darmoni, Nicolas Garcelon, Lina Fatima Soualmia, Annabel Bourde:
Doc'UMVF: Two search tools to provide quality-controlled teaching resources in French to students and teachers. Int. J. Medical Informatics 76(5-6): 357-362 (2007) - [j1]Jean-Marie Renard, Annabel Bourde, Marc Cuggia, Nicolas Garcelon, Nathalie Souf, Stéfan Jacques Darmoni, Régis Beuscart, Jean-Marc Brunetaud:
An Internet supported workflow for the publication process in UMVF (French Virtual Medical University). Int. J. Medical Informatics 76(5-6): 363-368 (2007) - 2006
- [c2]Nicolas Garcelon, Fleur Mougin, Cédric Bousquet, Anita Burgun:
Evidence in pharmacovigilance: extracting Adverse Drug Reactions articles from MEDLINE to link them to case databases. MIE 2006: 528-533 - 2004
- [c1]Tuan Due Tran, Nicolas Garcelon, Anita Burgun, Pierre Le Beux:
Experiments in cross-language medical information retrieval using a mixing translation module. MedInfo 2004: 946-949
Coauthor Index
aka: Anita Burgun
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