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ORCIDAntonio Rosato
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2020 – today
- 2023
[j21]Vincenzo Laveglia, Milana Bazayeva
, Claudia Andreini, Antonio Rosato:
Hunting down zinc(II)-binding sites in proteins with distance matrices. Bioinform. 39(10) (2023)- 2022
- [j20]Vincenzo Laveglia, Andrea Giachetti, Davide Sala, Claudia Andreini, Antonio Rosato:
Learning to Identify Physiological and Adventitious Metal-Binding Sites in the Three-Dimensional Structures of Proteins by Following the Hints of a Deep Neural Network. J. Chem. Inf. Model. 62(12): 2951-2960 (2022) - [j19]Benjamin Balzer, Antonio Rosato, Jonas von Wangenheim:
Dutch vs. first-price auctions with expectations-based loss-averse bidders. J. Econ. Theory 205: 105545 (2022) - [j18]Mihaly Varadi, Stephen Anyango, David R. Armstrong, John M. Berrisford, Preeti Choudhary, Mandar S. Deshpande, Nurul Nadzirin, Sreenath Nair, Lukás Pravda, Ahsan Tanweer, Bissan Al-Lazikani, Claudia Andreini, Geoffrey J. Barton, David Bednar, Karel Berka, Tom L. Blundell, Kelly Brock, José María Carazo, Jirí Damborský, Alessia David, Sucharita Dey, Roland L. Dunbrack Jr., Juan Fernández-Recio, Franca Fraternali, Toby J. Gibson, Manuela Helmer-Citterich, David Hoksza, Thomas A. Hopf, David Jakubec, Natarajan Kannan, Radoslav Krivák, Manjeet Kumar, Emmanuel D. Levy, Nir London, José Ramón Macías, Mallur Srivatsan Madhusudhan, Debora S. Marks, Lennart Martens, Stuart A McGowan, Jake E. McGreig, Vivek Modi, R. Gonzalo Parra, Gerardo Pepe, Damiano Piovesan, Jaime Prilusky, Valeria Putignano, Leandro G. Radusky, Pathmanaban Ramasamy, Atilio O. Rausch, Nathalie Reuter, Luis A. Rodriguez, Nathan J. Rollins, Antonio Rosato, Pawel Rubach, Luis Serrano, Gulzar Singh, Petr Skoda, Carlos Oscar Sánchez Sorzano, Jan Stourac, Joanna I. Sulkowska, Radka Svobodová Vareková, Natalia Tichshenko, Silvio C. E. Tosatto, Wim F. Vranken, Mark N. Wass, Dandan Xue, Daniel Zaidman, Janet M. Thornton, Michael J. E. Sternberg, Christine A. Orengo, Sameer Velankar:
PDBe-KB: collaboratively defining the biological context of structural data. Nucleic Acids Res. 50(D1): 534-542 (2022) - 2021
- [j17]Davide Sala, Andrea Giachetti, Antonio Rosato:
Insights into the Dynamics of the Human Zinc Transporter ZnT8 by MD Simulations. J. Chem. Inf. Model. 61(2): 901-912 (2021) - [j16]Vincenzo Laveglia, Andrea Giachetti, Linda Cerofolini, Kevin Haubrich, Marco Fragai, Alessio Ciulli, Antonio Rosato:
Automated Determination of Nuclear Magnetic Resonance Chemical Shift Perturbations in Ligand Screening Experiments: The PICASSO Web Server. J. Chem. Inf. Model. 61(12): 5726-5733 (2021) - [j15]Benjamin Balzer, Antonio Rosato:
Expectations-Based Loss Aversion in Auctions with Interdependent Values: Extensive vs. Intensive Risk. Manag. Sci. 67(2): 1056-1074 (2021) - [i2]Rodrigo Vargas Honorato, Panagiotis I. Koukos, Brian Jiménez-García, Andrei Tsaregorodtsev, Marco Verlato, Andrea Giachetti, Antonio Rosato, Alexandre M. J. J. Bonvin:
Structural biology in the clouds: The WeNMR-EOSC Ecosystem. CoRR abs/2107.01056 (2021)
2010 – 2019
- 2019
- [j14]Antonio Rosato, Agnieszka Tymula:
Loss aversion and competition in Vickrey auctions: Money ain't no good. Games Econ. Behav. 115: 188-208 (2019) - [j13]Marina Macchiagodena, Marco Pagliai, Claudia Andreini, Antonio Rosato, Piero Procacci:
Upgrading and Validation of the AMBER Force Field for Histidine and Cysteine Zinc(II)-Binding Residues in Sites with Four Protein Ligands. J. Chem. Inf. Model. 59(9): 3803-3816 (2019) - 2018
- [j12]Valeria Putignano, Antonio Rosato, Lucia Banci, Claudia Andreini:
MetalPDB in 2018: a database of metal sites in biological macromolecular structures. Nucleic Acids Res. 46(Database-Issue): D459-D464 (2018) - 2017
- [j11]Davide Sala, Silvia Ciambellotti, Andrea Giachetti, Paola Turano, Antonio Rosato:
Investigation of the Iron(II) Release Mechanism of Human H-Ferritin as a Function of pH. J. Chem. Inf. Model. 57(9): 2112-2118 (2017) - [i1]Merlijn N. van Rijswijk, Charlie Beirnaert, Christophe Caron, Marta Cascante, Victoria Dominguez Del Angel, Warwick B. Dunn, Timothy M. D. Ebbels, Franck Giacomoni, Alejandra N. González-Beltrán, Thomas Hankemeier, Kenneth Haug, Jose L. Izquierdo-García, Rafael C. Jiménez, Fabien Jourdan, Namrata Kale, Maria I. Klapa, Oliver Kohlbacher, Kairi Koort, Kim Kultima, Gildas Le Corguillé, Nicholas K. Moschonas, Steffen Neumann, Claire O'Donovan, Martin Reczko, Philippe Rocca-Serra, Antonio Rosato, Reza M. Salek, Susanna-Assunta Sansone, Venkata P. Satagopam, Daniel Schober, Ruth Shimmo, Rachel A. Spicer, Ola Spjuth, Etienne A. Thévenot, Mark R. Viant, Ralf J. M. Weber, Egon L. Willighagen, Gianluigi Zanetti, Christoph Steinbeck:
The future of metabolomics in ELIXIR. F1000Research 6: 1649- (2017) - 2016
- [j10]Yana Valasatava, Antonio Rosato, Lucia Banci, Claudia Andreini:
MetalPredator: a web server to predict iron-sulfur cluster binding proteomes. Bioinform. 32(18): 2850-2852 (2016) - 2013
- [j9]Claudia Andreini, Gabriele Cavallaro, Antonio Rosato, Yana Valasatava:
MetalS2: A Tool for the Structural Alignment of Minimal Functional Sites in Metal-Binding Proteins and Nucleic Acids. J. Chem. Inf. Model. 53(11): 3064-3075 (2013) - [j8]Claudia Andreini, Gabriele Cavallaro, Serena Lorenzini, Antonio Rosato:
MetalPDB: a database of metal sites in biological macromolecular structures. Nucleic Acids Res. 41(Database-Issue): 312-319 (2013) - 2012
- [j7]Tsjerk A. Wassenaar, Marc van Dijk, Nuno Loureiro-Ferreira, Gijs van der Schot, Sjoerd Jacob de Vries, Christophe Schmitz, Johan van der Zwan, Rolf Boelens, Andrea Giachetti, Lucio Ferella, Antonio Rosato, Ivano Bertini, Torsten Herrmann, Hendrik R. A. Jonker, Anurag Bagaria, Victor Jaravine, Peter Güntert, Harald Schwalbe, Wim F. Vranken, Jurgen F. Doreleijers, Gert Vriend, Geerten W. Vuister, Daniel Franke, Alexey Kikhney, Dmitri I. Svergun, Rasmus H. Fogh, John M. C. Ionides, Ernest D. Laue, Chris A. E. M. Spronk, Simonas Jurksa, Marco Verlato, Simone Badoer, Stefano Dal Pra, Mirco Mazzucato, Eric Frizziero, Alexandre M. J. J. Bonvin:
WeNMR: Structural Biology on the Grid. J. Grid Comput. 10(4): 743-767 (2012) - [j6]Yuanpeng Janet Huang, Antonio Rosato, Gautam Singh, Gaetano T. Montelione:
RPF: a quality assessment tool for protein NMR structures. Nucleic Acids Res. 40(Web-Server-Issue): 542-546 (2012) - 2011
- [j5]Ivano Bertini, David A. Case, Lucio Ferella, Andrea Giachetti, Antonio Rosato:
A Grid-enabled web portal for NMR structure refinement with AMBER. Bioinform. 27(17): 2384-2390 (2011) - [j4]Claudia Andreini, Ivano Bertini, Gabriele Cavallaro, Leonardo Decaria, Antonio Rosato:
A Simple Protocol for the Comparative Analysis of the Structure and Occurrence of Biochemical Pathways Across Superkingdoms. J. Chem. Inf. Model. 51(3): 730-738 (2011) - [c2]Tsjerk A. Wassenaar, Marc van Dijk, Nuno Loureiro-Ferreira, Gijs van der Schot, Sjoerd Jacob de Vries, Christophe Schmitz, Johan van der Zwan, Rolf Boelens, Andrea Giachetti, Lucio Ferella, Antonio Rosato, Ivano Bertini, Torsten Herrmann, Hendrik R. A. Jonker, Anurag Bagaria, Victor Jaravine, Peter Güntert, Harald Schwalbe, Wim F. Vranken, Jurgen F. Doreleijers, Gert Vriend, Geerten W. Vuister, Daniel Franke, Alexey Kikhney, Dmitri I. Svergun, Rasmus H. Fogh, John M. C. Ionides, Ernest D. Laue, Chris A. E. M. Spronk, Marco Verlato, Simone Badoer, Stefano Dal Pra, Mirco Mazzucato, Eric Frizziero, Alexandre M. J. J. Bonvin:
WeNMR: Structural Biology on the Grid. IWSG-Life 2011
2000 – 2009
- 2009
- [j3]Shailesh Sharma, Antonio Rosato:
Role of the N-Terminal Tail of Metal-Transporting P1B-type ATPases from Genome-Wide Analysis and Molecular Dynamics Simulations. J. Chem. Inf. Model. 49(1): 76-83 (2009) - 2007
- [j2]Andrea Passerini, Claudia Andreini, Sauro Menchetti, Antonio Rosato, Paolo Frasconi:
Predicting zinc binding at the proteome level. BMC Bioinform. 8 (2007) - 2006
- [c1]Sauro Menchetti, Andrea Passerini, Paolo Frasconi, Claudia Andreini, Antonio Rosato:
Improving Prediction of Zinc Binding Sites by Modeling the Linkage Between Residues Close in Sequence. RECOMB 2006: 309-320 - 2004
- [j1]Claudia Andreini, Ivano Bertini, Antonio Rosato:
A hint to search for metalloproteins in gene banks. Bioinform. 20(9): 1373-1380 (2004)
Coauthor Index
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