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Toni Gabaldón
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2020 – today
- 2023
- [i1]Robert M. Waterhouse
, Anne-Françoise Adam-Blondon, Bachir Balech
, Endre Barta
, Katharina F. Heil
, Graham M. Hughes
, Lars S. Jermiin
, Matús Kalas
, Jerry Lanfear
, Evangelos Pafilis, Aristotelis C. Papageorgiou, Fotis E. Psomopoulos
, Niels Raes
, Josephine Burgin
, Toni Gabaldón
:
The ELIXIR Biodiversity Community: Understanding short- and long-term changes in biodiversity. F1000Research 12: 499 (2023) - 2022
- [j30]Leandro A Bugnon, Alejandro A. Edera, Santiago Prochetto, Matias Gerard
, Jonathan Raad, Emilio Fenoy
, Mariano Rubiolo, Uciel Chorostecki
, Toni Gabaldón, Federico Ariel, Leandro E. Di Persia
, Diego H. Milone, Georgina Stegmayer:
Secondary structure prediction of long noncoding RNA: review and experimental comparison of existing approaches. Briefings Bioinform. 23(4) (2022) - [j29]Diego Fuentes
, Manuel Molina, Uciel Chorostecki
, Salvador Capella-Gutiérrez
, Marina Marcet-Houben
, Toni Gabaldón
:
PhylomeDB V5: an expanding repository for genome-wide catalogues of annotated gene phylogenies. Nucleic Acids Res. 50(D1): 1062-1068 (2022) - [j28]Yannis Nevers, Tamsin E. M. Jones
, Dushyanth Jyothi
, Bethan Yates
, Meritxell Ferret, Laura Portell-Silva, Laia Codó, Salvatore Cosentino
, Marina Marcet-Houben
, Anna Vlasova, Laetitia Poidevin, Arnaud Kress, Mark Hickman, Emma Persson, Ivana Pilizota
, Cristina Guijarro-Clarke
, Adrian M. Altenhoff, Elspeth A. Bruford
, Christophe Dessimoz
, Ingo Ebersberger, David M. Emms, Toni Gabaldón
, Natasha M. Glover
, Yanhui Hu, Wataru Iwasaki
, Odile Lecompte
, Benjamin Linard, María J. Martín, David S. Roos
, Erik Sonhammer, Paul D. Thomas, David Thybert, Klaas Vandepoele
, Salvador Capella-Gutiérrez, Asier Gonzalez-Uriarte, Javier Garrayo-Ventas, Dmitry Repchevsky, Vicky Sundesha, Erik L. L. Sonnhammer:
The Quest for Orthologs orthology benchmark service in 2022. Nucleic Acids Res. 50(W1): 623-632 (2022) - 2021
- [j27]Ahmed Ibrahem Hafez
, Ricardo Futami, Amir Arastehfar
, Farnaz Daneshnia
, Ana Miguel, Francisco J. Roig, Beatriz Soriano
, Jaume Pérez-Sánchez
, Teun Boekhout, Toni Gabaldón
, Carlos Lloréns:
SeqEditor: an application for primer design and sequence analysis with or without GTF/GFF files. Bioinform. 37(11): 1610-1612 (2021) - 2020
- [j26]Hrant Hovhannisyan
, Ahmed Ibrahem Hafez
, Carlos Lloréns, Toni Gabaldón
:
CROSSMAPPER: estimating cross-mapping rates and optimizing experimental design in multi-species sequencing studies. Bioinform. 36(3): 925-927 (2020) - [j25]Marina Marcet-Houben
, Toni Gabaldón:
EvolClust: automated inference of evolutionary conserved gene clusters in eukaryotes. Bioinform. 36(4): 1265-1266 (2020) - [j24]Cinta Pegueroles
, Verónica Mixão
, Laia Carreté
, Manuel Molina, Toni Gabaldón
:
HaploTypo: a variant-calling pipeline for phased genomes. Bioinform. 36(8): 2569-2571 (2020) - [j23]Uciel Chorostecki
, Manuel Molina, Leszek P. Pryszcz
, Toni Gabaldón
:
MetaPhOrs 2.0: integrative, phylogeny-based inference of orthology and paralogy across the tree of life. Nucleic Acids Res. 48(Webserver-Issue): W553-W557 (2020)
2010 – 2019
- 2018
- [j22]Kristoffer Forslund
, Cécile Pereira
, Salvador Capella-Gutiérrez
, Alan W. Sousa da Silva
, Adrian M. Altenhoff
, Jaime Huerta-Cepas
, Matthieu Muffato
, Mateus Patricio
, Klaas Vandepoele
, Ingo Ebersberger, Judith A. Blake, Jesualdo Tomás Fernández-Breis
, The Quest for Orthologs Consortium, Brigitte Boeckmann, Toni Gabaldón, Erik L. L. Sonnhammer, Christophe Dessimoz
, Suzanna Lewis:
Gearing up to handle the mosaic nature of life in the quest for orthologs. Bioinform. 34(2): 323-329 (2018) - 2016
- [j21]Patrice Baa-Puyoulet, Nicolas Parisot
, Gérard Febvay
, Jaime Huerta-Cepas
, Augusto F. Vellozo, Toni Gabaldón, Federica Calevro
, Hubert Charles
, Stefano Colella
:
ArthropodaCyc: a CycADS powered collection of BioCyc databases to analyse and compare metabolism of arthropods. Database J. Biol. Databases Curation 2016 (2016) - [j20]Pedro Furió-Tarí, Sonia Tarazona, Toni Gabaldón, Anton J. Enright
, Ana Conesa
:
spongeScan: A web for detecting microRNA binding elements in lncRNA sequences. Nucleic Acids Res. 44(Webserver-Issue): W176-W180 (2016) - 2014
- [j19]Erik L. L. Sonnhammer
, Toni Gabaldón
, Alan W. Sousa da Silva
, Maria Jesus Martin
, Marc Robinson-Rechavi
, Brigitte Boeckmann, Paul D. Thomas
, Christophe Dessimoz
, The Quest for Orthologs Consortium:
Big data and other challenges in the quest for orthologs. Bioinform. 30(21): 2993-2998 (2014) - [j18]Sean Powell
, Kristoffer Forslund
, Damian Szklarczyk, Kalliopi Trachana, Alexander Roth, Jaime Huerta-Cepas
, Toni Gabaldón
, Thomas Rattei
, Christopher J. Creevey, Michael Kuhn
, Lars Juhl Jensen
, Christian von Mering
, Peer Bork
:
eggNOG v4.0: nested orthology inference across 3686 organisms. Nucleic Acids Res. 42(Database-Issue): 231-239 (2014) - [j17]Jaime Huerta-Cepas
, Salvador Capella-Gutiérrez
, Leszek P. Pryszcz
, Marina Marcet-Houben
, Toni Gabaldón
:
PhylomeDB v4: zooming into the plurality of evolutionary histories of a genome. Nucleic Acids Res. 42(Database-Issue): 897-902 (2014) - [j16]Juliane C. Dohm
, André E. Minoche, Daniela Holtgräwe
, Salvador Capella-Gutiérrez
, Falk Zakrzewski, Hakim Tafer
, Oliver Rupp
, Thomas Rosleff Sörensen, Ralf Stracke
, Richard Reinhardt
, Alexander Goesmann
, Thomas Kraft, Britta Schulz, Peter F. Stadler
, Thomas Schmidt, Toni Gabaldón
, Hans Lehrach, Bernd Weisshaar
, Heinz Himmelbauer
:
The genome of the recently domesticated crop plant sugar beet (Beta vulgaris) Open. Nat. 505(7484): 546-549 (2014) - 2013
- [j15]Salvador Capella-Gutiérrez
, Toni Gabaldón
:
Measuring guide-tree dependency of inferred gaps in progressive aligners. Bioinform. 29(8): 1011-1017 (2013) - 2012
- [j14]Christophe Dessimoz
, Toni Gabaldón, David S. Roos
, Erik L. L. Sonnhammer
, Javier Herrero
:
Toward community standards in the quest for orthologs. Bioinform. 28(6): 900-904 (2012) - 2011
- [j13]Jaime Huerta-Cepas
, Joaquín Dopazo
, Martijn A. Huynen
, Toni Gabaldón
:
Evidence for short-time divergence and long-time conservation of tissue-specific expression after gene duplication. Briefings Bioinform. 12(5): 442-448 (2011) - [j12]Augusto F. Vellozo, Amélie S. Véron, Patrice Baa-Puyoulet, Jaime Huerta-Cepas
, Ludovic Cottret
, Gérard Febvay
, Federica Calevro
, Yvan Rahbé
, Angela E. Douglas, Toni Gabaldón, Marie-France Sagot, Hubert Charles
, Stefano Colella
:
CycADS: an annotation database system to ease the development and update of BioCyc databases. Database J. Biol. Databases Curation 2011 (2011) - [j11]Jaime Huerta-Cepas
, Toni Gabaldón
:
Assigning duplication events to relative temporal scales in genome-wide studies. Bioinform. 27(1): 38-45 (2011) - [j10]Jaime Huerta-Cepas
, Salvador Capella-Gutiérrez
, Leszek P. Pryszcz
, Ivan Andreevich Denisov
, Diego Kormes, Marina Marcet-Houben
, Toni Gabaldón:
PhylomeDB v3.0: an expanding repository of genome-wide collections of trees, alignments and phylogeny-based orthology and paralogy predictions. Nucleic Acids Res. 39(Database-Issue): 556-560 (2011) - [j9]Rubén Sánchez
, François Serra
, Joaquín Tárraga, Ignacio Medina
, José Carbonell
, Luis Pulido, Alejandro de María, Salvador Capella-Gutiérrez
, Jaime Huerta-Cepas
, Toni Gabaldón, Joaquín Dopazo
, Hernán Dopazo
:
Phylemon 2.0: a suite of web-tools for molecular evolution, phylogenetics, phylogenomics and hypotheses testing. Nucleic Acids Res. 39(Web-Server-Issue): 470-474 (2011) - 2010
- [j8]Jaime Huerta-Cepas
, Joaquín Dopazo
, Toni Gabaldón
:
ETE: a python Environment for Tree Exploration. BMC Bioinform. 11: 24 (2010) - [j7]Thomas Lingner, Stefanie Mühlhausen
, Toni Gabaldón
, Cédric Notredame
, Peter Meinicke:
Predicting phenotypic traits of prokaryotes from protein domain frequencies. BMC Bioinform. 11: 481 (2010) - [j6]Agatha Schlüter
, Alejandro Real-Chicharro, Toni Gabaldón
, Francisca Sánchez-Jiménez
, Aurora Pujol
:
PeroxisomeDB 2.0: an integrative view of the global peroxisomal metabolome. Nucleic Acids Res. 38(Database-Issue): 800-805 (2010)
2000 – 2009
- 2009
- [j5]Salvador Capella-Gutiérrez
, José M. Silla-Martínez, Toni Gabaldón
:
trimAl: a tool for automated alignment trimming in large-scale phylogenetic analyses. Bioinform. 25(15): 1972-1973 (2009) - [c2]Mateus Patricio, Jaime Huerta-Cepas, Toni Gabaldón, Rafael Zardoya
, David Posada
:
Automatic Prediction of the Genetic Code. IWANN (2) 2009: 1125-1129 - 2008
- [j4]Jaime Huerta-Cepas
, Anibal Bueno
, Joaquín Dopazo
, Toni Gabaldón
:
PhylomeDB: a database for genome-wide collections of gene phylogenies. Nucleic Acids Res. 36(Database-Issue): 491-496 (2008) - 2007
- [j3]Agatha Schlüter
, Stéphane Fourcade
, Enric Domènech-Estévez, Toni Gabaldón
, Jaime Huerta-Cepas
, Guillaume Berthommier, Raymond Ripp, Ronald J. A. Wanders, Olivier Poch, Aurora Pujol
:
PeroxisomeDB: a database for the peroxisomal proteome, functional genomics and disease. Nucleic Acids Res. 35(Database-Issue): 815-822 (2007) - [j2]Joaquín Tárraga, Ignacio Medina
, Leonardo Arbiza, Jaime Huerta-Cepas
, Toni Gabaldón
, Joaquín Dopazo
, Hernán Dopazo
:
Phylemon: a suite of web tools for molecular evolution, phylogenetics and phylogenomics. Nucleic Acids Res. 35(Web-Server-Issue): 38-42 (2007) - [j1]Toni Gabaldón
, Martijn A. Huynen
:
From Endosymbiont to Host-Controlled Organelle: The Hijacking of Mitochondrial Protein Synthesis and Metabolism. PLoS Comput. Biol. 3(11) (2007) - 2005
- [c1]Toni Gabaldón
, Martijn A. Huynen
:
Lineage-specific gene loss following mitochondrial endosymbiosis and its potential for function prediction in eukaryotes. ECCB/JBI 2005: 150
Coauthor Index
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last updated on 2024-08-13 20:49 CEST by the dblp team
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