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2010 – 2019
- 2017
[j10]Anne Condon, Bonnie Kirkpatrick, Ján Manuch:
Design of nucleic acid strands with long low-barrier folding pathways. Nat. Comput. 16(2): 261-284 (2017)- 2016
- [c11]Bonnie Kirkpatrick:
Haplotype Inference for Pedigrees with Few Recombinations. ISBRA 2016: 269-283 - [i4]Bonnie Kirkpatrick:
Haplotype Inference for Pedigrees with Few Recombinations. CoRR abs/1602.04270 (2016) - [i3]Bonnie Kirkpatrick:
Fast Computation of the Kinship Coefficients. CoRR abs/1602.04368 (2016) - 2014
- [j9]Anne Condon, Bonnie Kirkpatrick, Ján Manuch:
Reachability bounds for chemical reaction networks and strand displacement systems. Nat. Comput. 13(4): 499-516 (2014) - [j8]Bonnie Kirkpatrick, Kristian Stevens:
Perfect Phylogeny Problems with Missing Values. IEEE ACM Trans. Comput. Biol. Bioinform. 11(5): 928-941 (2014) - [c10]Monir Hajiaghayi, Bonnie Kirkpatrick, Liangliang Wang, Alexandre Bouchard-Côté:
Efficient Continuous-Time Markov Chain Estimation. ICML 2014: 638-646 - 2012
- [j7]Bonnie Kirkpatrick, Yakir Reshef, Hilary K. Finucane, Haitao Jiang, Binhai Zhu, Richard M. Karp:
Comparing Pedigree Graphs. J. Comput. Biol. 19(9): 998-1014 (2012) - [c9]Anne Condon, Bonnie Kirkpatrick, Ján Manuch:
Reachability Bounds for Chemical Reaction Networks and Strand Displacement Systems. DNA 2012: 43-57 - [c8]Bonnie Kirkpatrick:
Non-identifiable Pedigrees and a Bayesian Solution. ISBRA 2012: 139-152 - [c7]Bonnie Kirkpatrick, Alexandre Bouchard-Côté:
Bayesian Pedigree Analysis using Measure Factorization. NIPS 2012: 2906-2914 - [i2]Bonnie Kirkpatrick, Kay Kirkpatrick:
Optimal State-Space Reduction for Pedigree Hidden Markov Models. CoRR abs/1202.2468 (2012) - 2011
- [b1]Bonnie Kirkpatrick:
Algorithms for Human Genetics. University of California, Berkeley, USA, 2011 - [j6]Bonnie Kirkpatrick:
Haplotypes versus genotypes on pedigrees. Algorithms Mol. Biol. 6: 10 (2011) - [j5]Bonnie Kirkpatrick, Shuai Cheng Li
, Richard M. Karp, Eran Halperin:
Pedigree Reconstruction Using Identity by Descent. J. Comput. Biol. 18(11): 1481-1493 (2011) - [c6]Bonnie Kirkpatrick, Shuai Cheng Li, Richard M. Karp, Eran Halperin:
Pedigree Reconstruction Using Identity by Descent. RECOMB 2011: 136-152 - [c5]Kristian Stevens, Bonnie Kirkpatrick:
Efficiently Solvable Perfect Phylogeny Problems on Binary and k-State Data with Missing Values. WABI 2011: 282-297 - 2010
- [j4]Bonnie Kirkpatrick, Eran Halperin, Richard M. Karp:
Haplotype Inference in Complex Pedigrees. J. Comput. Biol. 17(3): 269-280 (2010) - [c4]Bonnie Kirkpatrick:
Haplotypes versus Genotypes on Pedigrees. WABI 2010: 136-147 - [i1]Bonnie Kirkpatrick, Yakir Reshef, Hilary K. Finucane, Haitao Jiang, Binhai Zhu, Richard M. Karp:
Algorithms for Comparing Pedigree Graphs. CoRR abs/1009.0909 (2010)
2000 – 2009
- 2009
- [c3]Bonnie Kirkpatrick, Javier Rosa, Eran Halperin, Richard M. Karp:
Haplotype Inference in Complex Pedigrees. RECOMB 2009: 108-120 - 2007
- [j3]Bonnie Kirkpatrick, Carlos Santos Armendariz, Richard M. Karp, Eran Halperin:
HAPLOPOOL: improving haplotype frequency estimation through DNA pools and phylogenetic modeling. Bioinform. 23(22): 3048-3055 (2007) - 2005
- [j2]Xinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato:
Using Motion Planning to Study RNA Folding Kinetics. J. Comput. Biol. 12(6): 862-881 (2005) - 2004
- [c2]Xinyu Tang, Bonnie Kirkpatrick, Shawna L. Thomas, Guang Song, Nancy M. Amato:
Using motion planning to study RNA folding kinetics. RECOMB 2004: 252-261 - 2003
- [j1]Brendan Mumey, Brian W. Bailey, Bonnie Kirkpatrick, Algirdas J. Jesaitis, Thomas Angel, Edward A. Dratz:
A New Method for Mapping Discontinuous Antibody Epitopes to Reveal Structural Features of Proteins. J. Comput. Biol. 10(3/4): 555-567 (2003) - [c1]Brendan Mumey, Thomas Angel, Bonnie Kirkpatrick, Brian W. Bailey, P. Hargrave, Algirdas J. Jesaitis, Edward A. Dratz:
Mapping Discontinuous Antibody Epitopes to Reveal Protein Structure and Changes in Structure Related to Function. CSB 2003: 585-586
Coauthor Index
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