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Dan M. Bolser
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2020 – today
- 2021
- [j20]Marcela K. Tello-Ruiz
, Sushma Naithani
, Parul Gupta, Andrew Olson, Sharon Wei, Justin Preece, Yinping Jiao, Bo Wang, Kapeel Chougule, Priyanka Garg, Justin Elser, Sunita Kumari, Vivek Kumar, Bruno Contreras-Moreira
, Guy Naamati
, Nancy George, Justin Cook
, Dan M. Bolser, Peter D'Eustachio
, Lincoln D. Stein, Amit Gupta, Weijia Xu, Jennifer Regala
, Irene Papatheodorou
, Paul J. Kersey, Paul Flicek
, Crispin Taylor, Pankaj Jaiswal
, Doreen Ware:
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research. Nucleic Acids Res. 49(Database-Issue): D1452-D1463 (2021) - 2020
- [j19]Kevin L. Howe
, Bruno Contreras-Moreira
, Nishadi De Silva
, Gareth Maslen
, Wasiu A. Akanni
, James E. Allen
, Jorge Álvarez-Jarreta
, Matthieu Barba
, Dan M. Bolser
, Lahcen Cambell, Manuel Carbajo
, Marc Chakiachvili
, Mikkel B. Christensen
, Carla A. Cummins
, Alayne Cuzick
, Paul Davis
, Silvie Fexova, Astrid Gall
, Nancy George, Laurent Gil
, Parul Gupta, Kim E. Hammond-Kosack
, Erin Haskell
, Sarah E. Hunt
, Pankaj Jaiswal
, Sophie H. Janacek
, Paul J. Kersey, Nick Langridge, Uma Maheswari
, Thomas Maurel
, Mark D. McDowall, Benjamin Moore
, Matthieu Muffato
, Guy Naamati
, Sushma Naithani
, Andrew Olson, Irene Papatheodorou
, Mateus Patricio, Michael Paulini
, Helder Pedro
, Emily Perry
, Justin Preece, Marc Rosello, Matthew Russell
, Vasily Sitnik, Daniel M. Staines, Joshua C. Stein
, Marcela K. Tello-Ruiz, Stephen J. Trevanion
, Martin Urban
, Sharon Wei, Doreen Ware, Gary Williams, Andrew D. Yates
, Paul Flicek
:
Ensembl Genomes 2020 - enabling non-vertebrate genomic research. Nucleic Acids Res. 48(Database-Issue): D689-D695 (2020)
2010 – 2019
- 2018
- [j18]Marcela K. Tello-Ruiz, Sushma Naithani
, Joshua C. Stein
, Parul Gupta, Michael Campbell, Andrew Olson, Sharon Wei, Justin Preece, Matthew J. Geniza
, Yinping Jiao, Young Koung Lee, Bo Wang
, Joseph Mulvaney, Kapeel Chougule, Justin Elser, Noor Al-Bader, Sunita Kumari, James Thomason, Vivek Kumar, Daniel M. Bolser
, Guy Naamati
, Electra Tapanari, Nuno A. Fonseca
, Laura Huerta
, Haider Iqbal
, Maria Keays
, Alfonso Muñoz-Pomer Fuentes, Y. Amy Tang
, Antonio Fabregat
, Peter D'Eustachio
, Joel Weiser, Lincoln D. Stein, Robert Petryszak
, Irene Papatheodorou
, Paul J. Kersey
, Patti Lockhart
, Crispin Taylor, Pankaj Jaiswal
, Doreen Ware:
Gramene 2018: unifying comparative genomics and pathway resources for plant research. Nucleic Acids Res. 46(Database-Issue): D1181-D1189 (2018) - [j17]Paul Julian Kersey
, James E. Allen
, Alexis Allot, Matthieu Barba
, Sanjay Boddu
, Bruce J. Bolt
, Denise Carvalho-Silva, Mikkel B. Christensen
, Paul Davis
, Christoph Grabmueller, Navin Kumar, Zicheng Liu, Thomas Maurel
, Benjamin Moore
, Mark D. McDowall
, Uma Maheswari
, Guy Naamati
, Victoria Newman, Chuang Kee Ong
, Michael Paulini
, Helder Pedro
, Emily Perry
, Matthew Russell, Helen Sparrow, Electra Tapanari, Kieron R. Taylor
, Alessandro Vullo
, Gareth Williams, Amonida Zadissa
, Andrew Olson, Joshua C. Stein
, Sharon Wei, Marcela K. Tello-Ruiz, Doreen Ware, Aurelien Luciani
, Simon C. Potter
, Robert D. Finn
, Martin Urban
, Kim E. Hammond-Kosack
, Dan M. Bolser
, Nishadi De Silva
, Kevin L. Howe
, Nicholas Langridge
, Gareth Maslen
, Daniel Michael Staines
, Andrew D. Yates
:
Ensembl Genomes 2018: an integrated omics infrastructure for non-vertebrate species. Nucleic Acids Res. 46(Database-Issue): D802-D808 (2018) - 2016
- [j16]Jon C. Ison
, Kristoffer Rapacki, Hervé Ménager
, Matús Kalas
, Emil Rydza, Piotr Chmura
, Christian Anthon
, Niall Beard
, Karel Berka
, Dan M. Bolser
, Tim Booth
, Anthony Bretaudeau, Jan Brezovsky
, Rita Casadio
, Gianni Cesareni, Frederik Coppens
, Michael Cornell, Gianmauro Cuccuru
, Kristian Davidsen, Gianluca Della Vedova
, Tunca Dogan
, Olivia Doppelt-Azeroual
, Laura Emery, Elisabeth Gasteiger
, Thomas Gatter, Tatyana Goldberg, Marie Grosjean
, Björn A. Grüning
, Manuela Helmer-Citterich
, Hans Ienasescu, Vassilios Ioannidis
, Martin Closter Jespersen, Rafael C. Jiménez
, Nick S. Juty, Peter Juvan, Maximilian Koch, Camille Laibe
, Jing-Woei Li, Luana Licata
, Fabien Mareuil
, Ivan Micetic
, Rune Møllegaard Friborg, Sébastien Moretti
, Chris Morris
, Steffen Möller, Aleksandra Nenadic, Hedi Peterson
, Giuseppe Profiti
, Peter M. Rice, Paolo Romano
, Paola Roncaglia, Rabie Saidi
, Andrea Schafferhans
, Veit Schwämmle
, Callum Smith, Maria Maddalena Sperotto, Heinz Stockinger
, Radka Svobodová Vareková
, Silvio C. E. Tosatto
, Victor de la Torre, Paolo Uva
, Allegra Via, Guy Yachdav, Federico Zambelli
, Gert Vriend, Burkhard Rost
, Helen E. Parkinson
, Peter Løngreen, Søren Brunak
:
Tools and data services registry: a community effort to document bioinformatics resources. Nucleic Acids Res. 44(Database-Issue): 38-47 (2016) - [j15]Paul Julian Kersey
, James E. Allen
, Irina M. Armean
, Sanjay Boddu
, Bruce J. Bolt
, Denise Carvalho-Silva, Mikkel B. Christensen
, Paul Davis
, Lee J. Falin
, Christoph Grabmueller, Jay C. Humphrey, Arnaud Kerhornou, Julia Khobova, Naveen K. Aranganathan, Nicholas Langridge
, Ernesto Lowy-Gallego
, Mark D. McDowall, Uma Maheswari
, Michael Nuhn, Chuang Kee Ong
, Bert Overduin, Michael Paulini, Helder Pedro
, Emily Perry
, Giulietta Spudich, Electra Tapanari
, Brandon Walts, Gareth Williams, Marcela K. Tello-Ruiz, Joshua C. Stein
, Sharon Wei, Doreen Ware, Daniel M. Bolser, Kevin L. Howe
, Eugene Kulesha
, Daniel Lawson
, Gareth Maslen
, Daniel M. Staines:
Ensembl Genomes 2016: more genomes, more complexity. Nucleic Acids Res. 44(Database-Issue): 574-580 (2016) - [j14]Marcela K. Tello-Ruiz, Joshua C. Stein
, Sharon Wei, Justin Preece, Andrew Olson, Sushma Naithani
, Vindhya Amarasinghe, Palitha Dharmawardhana, Yinping Jiao, Joseph Mulvaney, Sunita Kumari, Kapeel Chougule, Justin Elser, Bo Wang
, James Thomason, Daniel M. Bolser, Arnaud Kerhornou, Brandon Walts, Nuno A. Fonseca
, Laura Huerta
, Maria Keays
, Y. Amy Tang
, Helen E. Parkinson
, Antonio Fabregat
, Sheldon J. McKay, Joel Weiser, Peter D'Eustachio
, Lincoln Stein, Robert Petryszak, Paul J. Kersey
, Pankaj Jaiswal, Doreen Ware:
Gramene 2016: comparative plant genomics and pathway resources. Nucleic Acids Res. 44(Database-Issue): 1133-1140 (2016) - 2014
- [j13]Paul Julian Kersey
, James E. Allen
, Mikkel B. Christensen
, Paul Davis
, Lee J. Falin
, Christoph Grabmueller, Daniel Seth Toney Hughes, Jay C. Humphrey, Arnaud Kerhornou
, Julia Khobova, Nicholas Langridge
, Mark D. McDowall
, Uma Maheswari
, Gareth Maslen
, Michael Nuhn
, Chuang Kee Ong
, Michael Paulini, Helder Pedro, Iliana Toneva, Mary Ann Tuli, Brandon Walts
, Gareth Williams, Derek Wilson, Ken Youens-Clark, Marcela K. Monaco, Joshua C. Stein
, Xuehong Wei, Doreen Ware, Daniel M. Bolser
, Kevin Lee Howe
, Eugene Kulesha
, Daniel Lawson
, Daniel Michael Staines
:
Ensembl Genomes 2013: scaling up access to genome-wide data. Nucleic Acids Res. 42(Database-Issue): 546-552 (2014) - [j12]Marcela K. Monaco, Joshua C. Stein
, Sushma Naithani
, Sharon Wei, Palitha Dharmawardhana, Sunita Kumari, Vindhya Amarasinghe, Ken Youens-Clark
, James Thomason, Justin Preece, Shiran Pasternak, Andrew Olson, Yinping Jiao, Zhenyuan Lu, Daniel M. Bolser
, Arnaud Kerhornou
, Daniel M. Staines
, Brandon Walts, Guanming Wu, Peter D'Eustachio
, Robin Haw, David Croft, Paul J. Kersey
, Lincoln Stein, Pankaj Jaiswal, Doreen Ware:
Gramene 2013: comparative plant genomics resources. Nucleic Acids Res. 42(Database-Issue): 1193-1199 (2014) - 2013
- [j11]Jing-Woei Li
, Dan M. Bolser
, Magnus Manske, Federico Manuel Giorgi
, Nikolay Vyahhi, Björn Usadel
, Bernardo J. Clavijo
, Ting-Fung Chan
, Nathalie Wong, Daniel R. Zerbino
, Maria Victoria Schneider:
The NGS WikiBook: a dynamic collaborative online training effort with long-term sustainability. Briefings Bioinform. 14(5): 548-555 (2013) - [j10]Jon C. Ison
, Matús Kalas
, Inge Jonassen
, Dan M. Bolser
, Mahmut Uludag, Hamish McWilliam
, James Malone, Rodrigo Lopez
, Steve Pettifer
, Peter M. Rice:
EDAM: an ontology of bioinformatics operations, types of data and identifiers, topics and formats. Bioinform. 29(10): 1325-1332 (2013) - 2012
- [j9]Dan M. Bolser
, Pierre-Yves Chibon, Nicolas Palopoli
, Sungsam Gong
, Daniel Jacob
, Victoria Dominguez Del Angel
, Daniel Swan
, Sebastian Bassi
, Virginia González
, Prashanth Suravajhala
, Seungwoo Hwang, Paolo Romano
, Rob Edwards, Bryan Bishop, John Eargle, Timur Shtatland, Nicholas J. Provart, Dave Clements
, Daniel P. Renfro, Daeui Park
, Jong Bhak:
MetaBase - the wiki-database of biological databases. Nucleic Acids Res. 40(Database-Issue): 1250-1254 (2012) - [j8]Jing-Woei Li
, Keith Robison, Marcel Martin
, Andreas Sjödin
, Björn Usadel
, Matthew Young, Eric C. Olivares, Dan M. Bolser
:
The SEQanswers wiki: a wiki database of tools for high-throughput sequencing analysis. Nucleic Acids Res. 40(Database-Issue): 1313-1317 (2012) - 2010
- [j7]Henning Stehr, Jose M. Duarte
, Michael Lappe, Jong Bhak, Dan M. Bolser
:
PDBWiki: added value through community annotation of the Protein Data Bank. Database J. Biol. Databases Curation 2010 (2010)
2000 – 2009
- 2005
- [j6]Sungsam Gong
, Giseok Yoon, Insoo Jang, Dan M. Bolser
, Panos Dafas, Michael Schroeder, Hansol Choi, Yoobok Cho, Kyungsook Han, Sunghoon Lee, Hwanho Choi, Michael Lappe, Liisa Holm
, Sangsoo Kim, Donghoon Oh, Jonghwa Bhak:
PSIbase: a database of Protein Structural Interactome map (PSIMAP). Bioinform. 21(10): 2541-2543 (2005) - [j5]Daeui Park
, Semin Lee, Dan M. Bolser
, Michael Schroeder, Michael Lappe, Donghoon Oh, Jong Bhak:
Comparative interactomics analysis of protein family interaction networks using PSIMAP (protein structural interactome map). Bioinform. 21(15): 3234-3240 (2005) - [j4]Sungsam Gong
, Changbum Park, Hansol Choi, Junsu Ko, Insoo Jang, Jungsul Lee
, Dan M. Bolser
, Donghoon Oh, Deok-Soo Kim, Jong Bhak:
A protein domain interaction interface database: InterPare. BMC Bioinform. 6: 207 (2005) - 2004
- [j3]Wan Kyu Kim
, Dan M. Bolser
, Jong H. Park:
Large-scale co-evolution analysis of protein structural interlogues using the global protein structural interactome map (PSIMAP). Bioinform. 20(7): 1138-1150 (2004) - [j2]Panos Dafas, Dan M. Bolser
, Jacek Gomoluch, Jong-Chan Park, Michael Schroeder:
Using convex hulls to extract interaction interfaces from known structures. Bioinform. 20(10): 1486-1490 (2004) - 2003
- [j1]Dan M. Bolser
, Panos Dafas, Richard Harrington, Jong-Chan Park
, Michael Schroeder:
Visualisation and graph-theoretic analysis of a large-scale protein structural interactome. BMC Bioinform. 4: 45 (2003) - [c1]Panos Dafas, Dan M. Bolser, Jacek Gomoluch, Jong-Chan Park, Michael Schroeder:
Fast and efficient computation of domain-domaininteractions from known protein structures in the PDB. German Conference on Bioinformatics 2003: 27-32
Coauthor Index
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